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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047951 ID=TCONS_00047951|Name=TCONS_00047951|organism=Clytia hemisphaerica|type=transcript|length=1288bp
ATTTCTTTttgattaatacttttaaaataaacatacagaaaaagttcaat
tttctaTTATATCATCTTAGAATCATTTTTCATACTAATATcgaaaaaag
tcaagtctaaacgGTTCTTCTCAATTCGTTGAGTTAGAGCTGGTTGAACT
GCGTAATTCGTTCATTTCTGTAGATGCTCTCGGGTTTATTATAACACTGG
ATCTCAATTTGGCTTCCTTTTGTCCGACAAAATGTCTTTTGATCGATTGT
CCGATATTATAGGTGTACAAATACAGGATTGGGTTAAGTACAGAGTTGAC
GAAAGCTAATAAATGGACAGTATATTGAATTGCAAACAAATTTATATCTT
GTTGAggtcttttaaagaaaatgaaatatcCAAAACAAGCATATGGAATC
CAGCAaagaacaaaaatgaaaaacgaacgAAGACATAAGGTTAAAAAACG
TTGTCCATCATTGAATGTCGAAGCTTTTCGTTCGAGTTGATTTTTGCCGG
TGACGAAACGTTGTGTGATGATACGTCGAACTATTGTGTACGAGATGATC
GGCCACGGCAAACTGGCCAAAATAATGGTGGATAGAATAATAAATTGCTG
ATAGTATGCGTTAGATTGACTtgtcctaacttggaaagcgaATTTTGTCC
CAGCAAACACAAACGAGCAAACCCAGATTGCAAGACAGGTGTAATTTCGT
TGTCTTTTCGTCATACGGCGGTAGAGATGGGGATATTTCACAGCTAGAAG
TCTTTCCGTTGTCAAAACTAAATTCGTAAAAACTGAAACCATCAAAGTCA
CTTGGATGAAAGAGCTGCGTAAAAAAACATTCATTTCAACAGCAAAAGAG
TTTGTACTGAaagttaaaatctttgaaatgatGATTGTCAAGCCAAGAAT
TAAATCCGAGAtcgataaattcaaaataaaaacagttgATCTTTTTCGCT
GaaccattttcattttccaaatGAAAAAGATTTCTACGAAGTTTAGAATG
ATGATCAATGAAGCATTGATTGGACTGACAATGTCGAATAGAATATCTTT
TATCTCCATTTTCGTAAAACGCCAACGCTTCCAAGATGGTTTGATTTCCC
AGACCTTACTTTTCTGGTAACTTGATCTCTCTTCTCACTGAAAAATACTT
TATTGATGAAATTGGATTAATTTGTCATTAAATATAGCTGATATTGGACT
TTGGCGGTCCAATATCAATCACCGTTCGCTAATCGCTGCTCTATGCATTT
ACGTGCTAAACCTCTGATCATTTTACGTGTTGAACCTT Run BLAST on NCBI protein sequence of TCONS_00047951-protein >TCONS_00047951-protein ID=TCONS_00047951-protein|Name=TCONS_00047951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MEIKDILFDIVSPINASLIIILNFVEIFFIWKMKMVQRKRSTVFILNLSI
SDLILGLTIIISKILTFSTNSFAVEMNVFLRSSFIQVTLMVSVFTNLVLT
TERLLAVKYPHLYRRMTKRQRNYTCLAIWVCSFVFAGTKFAFQVRTSQSN
AYYQQFIILSTIILASLPWPIISYTIVRRIITQRFVTGKNQLERKASTFN
DGQRFLTLCLRSFFIFVLCWIPYACFGYFIFFKRPQQDINLFAIQYTVHL
LAFVNSVLNPILYLYTYNIGQSIKRHFVGQKEAKLRSSVIINPRASTEMN
ELRSSTSSNSTN Run BLAST on NCBI transcript from alignment at scaffold_139:132458..133745 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047951 ID=TCONS_00047951|Name=TCONS_00047951|organism=Clytia hemisphaerica|type=transcript|length=1288bp|location=Sequence derived from alignment at scaffold_139:132458..133745 (Clytia hemisphaerica)
AAGGTTCAACACGTAAAATGATCAGAGGTTTAGCACGTAAATGCATAGAG
CAGCGATTAGCGAACGGTGATTGATATTGGACCGCCAAAGTCCAATATCA
GCTATATTTAATGACAAATTAATCCAATTTCATCAATAAAGTATTTTTCA
GTGAGAAGAGAGATCAAGTTACCAGAAAAGTAAGGTCTGGGAAATCAAAC
CATCTTGGAAGCGTTGGCGTTTTACGAAAATGGAGATAAAAGATATTCTA
TTCGACATTGTCAGTCCAATCAATGCTTCATTGATCATCATTCTAAACTT
CGTAGAAATCTTTTTCatttggaaaatgaaaatggttCAGCGAAAAAGAT
caactgtttttattttgaatttatcgaTCTCGGATTTAATTCTTGGCTTG
ACAATCatcatttcaaagattttaacttTCAGTACAAACTCTTTTGCTGT
TGAAATGAATGTTTTTTTACGCAGCTCTTTCATCCAAGTGACTTTGATGG
TTTCAGTTTTTACGAATTTAGTTTTGACAACGGAAAGACTTCTAGCTGTG
AAATATCCCCATCTCTACCGCCGTATGACGAAAAGACAACGAAATTACAC
CTGTCTTGCAATCTGGGTTTGCTCGTTTGTGTTTGCTGGGACAAAATtcg
ctttccaagttaggacaAGTCAATCTAACGCATACTATCAGCAATTTATT
ATTCTATCCACCATTATTTTGGCCAGTTTGCCGTGGCCGATCATCTCGTA
CACAATAGTTCGACGTATCATCACACAACGTTTCGTCACCGGCAAAAATC
AACTCGAACGAAAAGCTTCGACATTCAATGATGGACAACGTTTTTTAACC
TTATGTCTTcgttcgtttttcatttttgttcttTGCTGGATTCCATATGC
TTGTTTTGgatatttcattttctttaaaagaccTCAACAAGATATAAATT
TGTTTGCAATTCAATATACTGTCCATTTATTAGCTTTCGTCAACTCTGTA
CTTAACCCAATCCTGTATTTGTACACCTATAATATCGGACAATCGATCAA
AAGACATTTTGTCGGACAAAAGGAAGCCAAATTGAGATCCAGTGTTATAA
TAAACCCGAGAGCATCTACAGAAATGAACGAATTACGCAGTTCAACCAGC
TCTAACTCAACGAATTGAGAAGAACcgtttagacttgacttttttcgATA
TTAGTATGAAAAATGATTCTAAGATGATATAAtagaaaattgaacttttt
ctgtatgtttattttaaaagtattaatcaaAAAGAAAT Coding sequence (CDS) from alignment at scaffold_139:132458..133745 >TCONS_00047951 ID=TCONS_00047951|Name=TCONS_00047951|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_139:132458..133745 (Clytia hemisphaerica)
ATGGAGATAAAAGATATTCTATTCGACATTGTCAGTCCAATCAATGCTTC
ATTGATCATCATTCTAAACTTCGTAGAAATCTTTTTCatttggaaaatga
aaatggttCAGCGAAAAAGATcaactgtttttattttgaatttatcgaTC
TCGGATTTAATTCTTGGCTTGACAATCatcatttcaaagattttaacttT
CAGTACAAACTCTTTTGCTGTTGAAATGAATGTTTTTTTACGCAGCTCTT
TCATCCAAGTGACTTTGATGGTTTCAGTTTTTACGAATTTAGTTTTGACA
ACGGAAAGACTTCTAGCTGTGAAATATCCCCATCTCTACCGCCGTATGAC
GAAAAGACAACGAAATTACACCTGTCTTGCAATCTGGGTTTGCTCGTTTG
TGTTTGCTGGGACAAAATtcgctttccaagttaggacaAGTCAATCTAAC
GCATACTATCAGCAATTTATTATTCTATCCACCATTATTTTGGCCAGTTT
GCCGTGGCCGATCATCTCGTACACAATAGTTCGACGTATCATCACACAAC
GTTTCGTCACCGGCAAAAATCAACTCGAACGAAAAGCTTCGACATTCAAT
GATGGACAACGTTTTTTAACCTTATGTCTTcgttcgtttttcatttttgt
tcttTGCTGGATTCCATATGCTTGTTTTGgatatttcattttctttaaaa
gaccTCAACAAGATATAAATTTGTTTGCAATTCAATATACTGTCCATTTA
TTAGCTTTCGTCAACTCTGTACTTAACCCAATCCTGTATTTGTACACCTA
TAATATCGGACAATCGATCAAAAGACATTTTGTCGGACAAAAGGAAGCCA
AATTGAGATCCAGTGTTATAATAAACCCGAGAGCATCTACAGAAATGAAC
GAATTACGCAGTTCAACCAGCTCTAACTCAACGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047951-exon-scaffold_139-1491911889:132458..133745 | TCONS_00047951-exon-scaffold_139-1491911889:132458..133745 | Clytia hemisphaerica | exon |
| TCONS_00047951-exon-scaffold_139-1510915933:132458..133745 | TCONS_00047951-exon-scaffold_139-1510915933:132458..133745 | Clytia hemisphaerica | exon |
| TCONS_00047951-exon-scaffold_139-1575043694:132458..133745 | TCONS_00047951-exon-scaffold_139-1575043694:132458..133745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:132458..133745 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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