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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047952 ID=TCONS_00047952|Name=TCONS_00047952|organism=Clytia hemisphaerica|type=transcript|length=1758bp
CAAAAAGCAGAGTCGTTTTTTCAGATGGTGCATATTTTTTTCATGGGAGC
AGATTTTGGTGCGAATCTTTCAACTTCTTGGACGTACGCCGAAAAAATGC
ATGGATCAtacaaaatcaataaagaactttttttcgCAGTCATTTGTGCT
GTCAACTGTCTTCCCGCCTTATTCCTCGGAGggtattttcaacaaaaata
ccaaaatcgaAAACGCAGATTTTACTGGCTTGCTGGAACTCAGGCTTTTG
CTTCGATCGGTTCTGTGTTTTACACATGCTCATTTTCAGCTTTCGTTGTC
ATTTTGGGACGAATTGGACAAGGCTTTCTTTTGCTTCCGTCCGAAAGTAA
ACATTCGAACAAAAAACAATACTTTGGCGGTGTAGCCTATGGAACTGGTT
TGATTACGTCATCTTTTATGTTGGGGCTTTGTCGAGATGCGAATTTTCAA
ATCGGGCTGATTAAAATCGATTATGGGAACCTGTCAGCTGTTTTCATGGT
CGTGTTtttgttaatgtcaaaaatgagtatattctttcattttacaagaa
agaaaaagaacgaAACAATTGCTCGTAAAGCGAAATTATACGGATCATTC
ATGAACCATTACACAACAAAAGGGAAAGATTACCAAAAGTTACAAGAAAA
AGACGAGCGTATGAGAAAAATCACCAAAGCCCAGTTTACTCAAAACACGT
TGAGCTGGCTAGAGCAGTTATTGTTAATAAAGAAACACTCGAACGAGGCT
TTCCGATCTTTATATCTTCAAGCCATCTCACAATTCTCAACCACTCTCAG
CATTTATACCTTTATCATTCTGCTGAACCAACAATTTATTCAGTTTCCAA
AACTGATTTTGTTTAATGTTTGTGTAGGGGTGTTTGCGTCTtcacaaatt
tttgtcaatgtaGTATTCATTCGGAATTGGTTTCCACTTGGACAGAAGTT
TGATAACATACCTACATGCTTGGTATATCCATTCTATTTTCTGGCTTCGT
TTTACTTTACTAGCTATATCGATATCACAGAGTTAAAACTGACTGCTAGT
TTTACTTGCTTCATCTTTGCAGGACTTTCATCAACTATAACAAGACAAAA
GTATATCGATCTCAAAACGAGAAATGCGTCCTTCAAACCAAGTTTGCCAA
CGAACGCATCATTGAAAATGACACCTGTAGATTTTCACCGAATCTACACC
ATCACAACTAACTTATCGACGATTCTTGCTGTAGTTGTGGCTTCTTATTT
CAATAAATACAAACACTTGTTTAGTGGATCATTCTTCGTGCTTCacattt
catttgttttattttacgTAGCAAAAACAGTGAAGACCTAATCTTTATAA
CGCCAATCGTCaaaaggggccgtccacatagtacgtacgcgctaaaatgt
cgaaaatcgagtacctCCTCCCcatgtacgcaagcatacgttTTTGAGAA
gactccccctccccccttagtgcgtacgtactatgttgACGGCCCCAAAG
AAGACCTGGATCCCCTAATACTCCTGTTGGAAACCATATACCAGATGAAA
AAAACCATCAGTAACTTTGAAAACTATTTATCGAACTCTCATCATCCACT
TGGGAAAACACTCGCTCTTTTGTTGTGAATGAAAATATttcactgggtca
ctgagacaggggtgtatgatACTTAAGTAACATTCTATCATCGATGATTC
TGATTAGAAGCTTAGAGATGCCCTATAGTTAATTCATACATTGTAATCTA
TGTTCTTA Run BLAST on NCBI protein sequence of TCONS_00047952-protein >TCONS_00047952-protein ID=TCONS_00047952-protein|Name=TCONS_00047952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
QKAESFFQMVHIFFMGADFGANLSTSWTYAEKMHGSYKINKELFFAVICA
VNCLPALFLGGYFQQKYQNRKRRFYWLAGTQAFASIGSVFYTCSFSAFVV
ILGRIGQGFLLLPSESKHSNKKQYFGGVAYGTGLITSSFMLGLCRDANFQ
IGLIKIDYGNLSAVFMVVFLLMSKMSIFFHFTRKKKNETIARKAKLYGSF
MNHYTTKGKDYQKLQEKDERMRKITKAQFTQNTLSWLEQLLLIKKHSNEA
FRSLYLQAISQFSTTLSIYTFIILLNQQFIQFPKLILFNVCVGVFASSQI
FVNVVFIRNWFPLGQKFDNIPTCLVYPFYFLASFYFTSYIDITELKLTAS
FTCFIFAGLSSTITRQKYIDLKTRNASFKPSLPTNASLKMTPVDFHRIYT
ITTNLSTILAVVVASYFNKYKHLFSGSFFVLHISFVLFYVAKTVKT Run BLAST on NCBI transcript from alignment at scaffold_139:202242..203999 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047952 ID=TCONS_00047952|Name=TCONS_00047952|organism=Clytia hemisphaerica|type=transcript|length=1758bp|location=Sequence derived from alignment at scaffold_139:202242..203999 (Clytia hemisphaerica)
TAAGAACATAGATTACAATGTATGAATTAACTATAGGGCATCTCTAAGCT
TCTAATCAGAATCATCGATGATAGAATGTTACTTAAGTatcatacacccc
tgtctcagtgacccagtgaaATATTTTCATTCACAACAAAAGAGCGAGTG
TTTTCCCAAGTGGATGATGAGAGTTCGATAAATAGTTTTCAAAGTTACTG
ATGGTTTTTTTCATCTGGTATATGGTTTCCAACAGGAGTATTAGGGGATC
CAGGTCTTCTTTGGGGCCGTcaacatagtacgtacgcactaaggggggag
ggggagtcTTCTCAAAaacgtatgcttgcgtacatgGGGAGGaggtactc
gattttcgacattttagcgcgtacgtactatgtggacggccccttttGAC
GATTGGCGTTATAAAGATTAGGTCTTCACTGTTTTTGCTAcgtaaaataa
aacaaatgaaatgtGAAGCACGAAGAATGATCCACTAAACAAGTGTTTGT
ATTTATTGAAATAAGAAGCCACAACTACAGCAAGAATCGTCGATAAGTTA
GTTGTGATGGTGTAGATTCGGTGAAAATCTACAGGTGTCATTTTCAATGA
TGCGTTCGTTGGCAAACTTGGTTTGAAGGACGCATTTCTCGTTTTGAGAT
CGATATACTTTTGTCTTGTTATAGTTGATGAAAGTCCTGCAAAGATGAAG
CAAGTAAAACTAGCAGTCAGTTTTAACTCTGTGATATCGATATAGCTAGT
AAAGTAAAACGAAGCCAGAAAATAGAATGGATATACCAAGCATGTAGGTA
TGTTATCAAACTTCTGTCCAAGTGGAAACCAATTCCGAATGAATACtaca
ttgacaaaaatttgtgaAGACGCAAACACCCCTACACAAACATTAAACAA
AATCAGTTTTGGAAACTGAATAAATTGTTGGTTCAGCAGAATGATAAAGG
TATAAATGCTGAGAGTGGTTGAGAATTGTGAGATGGCTTGAAGATATAAA
GATCGGAAAGCCTCGTTCGAGTGTTTCTTTATTAACAATAACTGCTCTAG
CCAGCTCAACGTGTTTTGAGTAAACTGGGCTTTGGTGATTTTTCTCATAC
GCTCGTCTTTTTCTTGTAACTTTTGGTAATCTTTCCCTTTTGTTGTGTAA
TGGTTCATGAATGATCCGTATAATTTCGCTTTACGAGCAATTGTTtcgtt
ctttttctttcttgtaaaatgaaagaatatactcatttttgacattaaca
aaAACACGACCATGAAAACAGCTGACAGGTTCCCATAATCGATTTTAATC
AGCCCGATTTGAAAATTCGCATCTCGACAAAGCCCCAACATAAAAGATGA
CGTAATCAAACCAGTTCCATAGGCTACACCGCCAAAGTATTGTTTTTTGT
TCGAATGTTTACTTTCGGACGGAAGCAAAAGAAAGCCTTGTCCAATTCGT
CCCAAAATGACAACGAAAGCTGAAAATGAGCATGTGTAAAACACAGAACC
GATCGAAGCAAAAGCCTGAGTTCCAGCAAGCCAGTAAAATCTGCGTTTtc
gattttggtatttttgttgaaaataccCTCCGAGGAATAAGGCGGGAAGA
CAGTTGACAGCACAAATGACTGcgaaaaaaagttctttattgattttgta
TGATCCATGCATTTTTTCGGCGTACGTCCAAGAAGTTGAAAGATTCGCAC
CAAAATCTGCTCCCATGAAAAAAATATGCACCATCTGAAAAAACGACTCT
GCTTTTTG Coding sequence (CDS) from alignment at scaffold_139:202242..203999 >TCONS_00047952 ID=TCONS_00047952|Name=TCONS_00047952|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_139:202242..203999 (Clytia hemisphaerica)
TTAGGTCTTCACTGTTTTTGCTAcgtaaaataaaacaaatgaaatgtGAA
GCACGAAGAATGATCCACTAAACAAGTGTTTGTATTTATTGAAATAAGAA
GCCACAACTACAGCAAGAATCGTCGATAAGTTAGTTGTGATGGTGTAGAT
TCGGTGAAAATCTACAGGTGTCATTTTCAATGATGCGTTCGTTGGCAAAC
TTGGTTTGAAGGACGCATTTCTCGTTTTGAGATCGATATACTTTTGTCTT
GTTATAGTTGATGAAAGTCCTGCAAAGATGAAGCAAGTAAAACTAGCAGT
CAGTTTTAACTCTGTGATATCGATATAGCTAGTAAAGTAAAACGAAGCCA
GAAAATAGAATGGATATACCAAGCATGTAGGTATGTTATCAAACTTCTGT
CCAAGTGGAAACCAATTCCGAATGAATACtacattgacaaaaatttgtga
AGACGCAAACACCCCTACACAAACATTAAACAAAATCAGTTTTGGAAACT
GAATAAATTGTTGGTTCAGCAGAATGATAAAGGTATAAATGCTGAGAGTG
GTTGAGAATTGTGAGATGGCTTGAAGATATAAAGATCGGAAAGCCTCGTT
CGAGTGTTTCTTTATTAACAATAACTGCTCTAGCCAGCTCAACGTGTTTT
GAGTAAACTGGGCTTTGGTGATTTTTCTCATACGCTCGTCTTTTTCTTGT
AACTTTTGGTAATCTTTCCCTTTTGTTGTGTAATGGTTCATGAATGATCC
GTATAATTTCGCTTTACGAGCAATTGTTtcgttctttttctttcttgtaa
aatgaaagaatatactcatttttgacattaacaaaAACACGACCATGAAA
ACAGCTGACAGGTTCCCATAATCGATTTTAATCAGCCCGATTTGAAAATT
CGCATCTCGACAAAGCCCCAACATAAAAGATGACGTAATCAAACCAGTTC
CATAGGCTACACCGCCAAAGTATTGTTTTTTGTTCGAATGTTTACTTTCG
GACGGAAGCAAAAGAAAGCCTTGTCCAATTCGTCCCAAAATGACAACGAA
AGCTGAAAATGAGCATGTGTAAAACACAGAACCGATCGAAGCAAAAGCCT
GAGTTCCAGCAAGCCAGTAAAATCTGCGTTTtcgattttggtatttttgt
tgaaaataccCTCCGAGGAATAAGGCGGGAAGACAGTTGACAGCACAAAT
GACTGcgaaaaaaagttctttattgattttgtaTGATCCATGCATTTTTT
CGGCGTACGTCCAAGAAGTTGAAAGATTCGCACCAAAATCTGCTCCCATG
AAAAAAATATGCACCATCTGAAAAAACGACTCTGCTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047952-exon-scaffold_139-1491911889:202242..203999 | TCONS_00047952-exon-scaffold_139-1491911889:202242..203999 | Clytia hemisphaerica | exon |
| TCONS_00047952-exon-scaffold_139-1510915933:202242..203999 | TCONS_00047952-exon-scaffold_139-1510915933:202242..203999 | Clytia hemisphaerica | exon |
| TCONS_00047952-exon-scaffold_139-1575043694:202242..203999 | TCONS_00047952-exon-scaffold_139-1575043694:202242..203999 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:202242..203999 . |
Blast
The following BLAST results are available for this feature:
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