TCONS_00047885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047885
Unique NameTCONS_00047885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047885 ID=TCONS_00047885|Name=TCONS_00047885|organism=Clytia hemisphaerica|type=transcript|length=3780bp
tttaagAAACCAAACTAACATGCAACTCAATGGACTGAAATTCGAACATA
TGTGTTATGGGAAGAATGAAGAGCTGAAACCAAATTCAGTTTATTATTCT
GATACCAAGGACCAAATTGAAACCAAAAACCAAGTCAAACAAAGACCTTG
GAACATCAGCTCATGGATATTCCCAACCTTCAAGACACAGGACACTGATG
TAATGCTAACCCTTTGGAAGTCACTTGCTATTCCACACCTTGACTATTGC
TCCCAACTATGGTCTCCGTCAAAGTGATGCCTCATCCAACAATTGGAGCT
GctgcaaaaatcatttttgaactCGTTGAACCAGTTGAATTATTGGGAAA
AATTGAGTCAACTGAAAATTTACAGTCttgaaagaagaagagaaaGGTAC
AGAATAATCTACACATGGTGCATACTAAAAGATATCACTCCAAACTTCAA
TTACAGCGATGATGCAGGCGGCGTGCATTTGTACACAAACCAGAGACTGG
GTAGAAAATGTAATTTAAAAGCCGTTAATGtcaaacatgaaaatatttgg
AGGGATTGTCTCTCACAGGAAGGACCAAGACTTTTTAACGCTCTGCCAAA
ATCCCTTCGAAACCTTACAAAATGTaccaaacaaacttttaaacaaCATC
TTGACCAATTCCTGAATACACTGCCAGAGGAACCACTGCTTCCTAATTAT
TTCAACTTCAGGAGAGCTGATTCCAACAGTATATCAGTAATGGTCAATCA
TCGGATTCCACGAATTGGATGAGTACCATAAAGTGCAAAATCAAAAACGA
AGTATCACGAAGAAaaaagtaataaaaaatttaaagtattaCTCTAAAGA
ATCATCAATATGGCTGAggaaagaaaaaccaaaaagacTTCCATTTTGGA
TTTATCTAAATACATGGATAAAGCAATCCGTGTCAAGTTCAGTGGTGGTC
GAGAAGttgCTGGTGTCTTGAAAGGATTTGATCATCTTTTAAACATTGTA
TTGGACAATTGCACAGAATTCATGAgagATTCTGAAGATCCTTATAAAAT
TACGGATGAGACAAGAGACTTAGGTATTGTAGTATGCAGAGGAACAGCTG
TTGTTATGATTTGCCCAGTAGATGGGATGGAAGCTATAGCAAATCCTTTC
GTTCAACAAGATGCTTGAGCGAAGAATGTAAAATGAAAGAGCAATTTCCA
AGTGTTTTTGCTTGAGTTTACGATTTGGATTTAAAGAATTTCCAACAAAG
GAAGAGATGGCTTTTTGCTGAAATCTATagaaatattttgagttttgtta
tTTTGAGTTCTCTCGTTGCACTCAACAAGAAGGAAATTTGCATAAATTGC
CCCAAAAGGAAGAAATGCTGATGATTGGATTAGCTATTGGAGAGACAAAA
AGGAAATAAACTATATTGGACATCCATTTCttacaaattttttactttgt
aaagtgtttttgtataatttatttAGTAGTTTGATTTTATCattgcgttt
aaaatgggggaTGGTTAACGACTCTTTAGTGTCAGTTATTTTCTGGAGGA
CTTGTATAACCTCTTGGAGAGGTGTTTTTACCTTGACCCGATTTGTGAAG
AGATTGAATTTATGGTGTTTTTTCACTTGTGTTTGTTGTCACAATGAGCC
TTTCAGtaaagattttgtcttttttattaaaGTCTTATTAACGTGACCTC
CTAATGTTTCTTtatctgttttgtttttagagAAATAAGTAATAGATGAT
TATGGCTGAAAACaactcaaaaaagaaaagatttatatACAAATCAGTGC
TTGGAAATGCgtcaacaaaacaaaagaaacacgAACCAGCACCTCCACTG
GTAGACTTTCCTGATGACTTCGATACTTTCACACAACCAACCAAGAAAAT
GAAGTTGGATCTTGAAAAATCTCCAACAACtgcacaaaaaaagaaaattg
aaaagacagataattattttgatgacaTAAACTTTGACGATGATGATGCC
tttgatttgaaagaaattgacGAGATAGAGATTGCAGCTTCACAGCAACT
TGGTCTAAAGCCTAAAACCAATCCGGTCAAATCAACGATCAAAGACCCTT
TAGACCAGTTACTTGAAGATACACAACATATCAGACCTTCAATCGCTAAT
GGAAGATCTACAGCCTTTATGCCCCCTAAGGATAGGCCTGGCCCTAGTAC
TtcaaacaaatatcaaaataatgacAGAACAGTACATTTGCCACTGTCAC
AAAGAAATGATTCATACAAAAATAAGCTACCTGTCAATCAAAATTCCACT
ACTATGAACGCACCAAGTAACAGGACTAATGGACATAGCACTTCCATTTA
TAATcatagaaatagaaatgaaaCTTACACTGAACAACAGCAAATAAATA
TTCAGAACGAGGCTGAAAAGAAGAGGAACCTTGAAGAATCATTTCAAAAA
CAATACCATCAAGCACAAAAGACTGTCACTGAATACAAAACTAAACTCGA
CACCATGCAGAAGAAGTTTAACTCTAAAGATGGAGAGATTAAgattttga
gagagaaattaCGTAAATCTTccgaaaatgaaatgaaaataaaggaaagG
CTTGTCACTTTGGAGAGTTCTTCCAAAACAGAACAAAGTAAGAAAGAATC
TGACTTATTAAAGGAAGTTGAGAAATTGAAAACACAAttgaaattcaaag
aaaatgaagTCAAGGAAGCAATATCTAAACAAAAACAACTTGAGAGACAA
CCAAGGGTGAAACCTCCACTTAAAAGTCCGATCAAGGATAATAAAATACC
AGATGGATTCCAACAGACTAAAGAAACTAAGGAAAAAGACAAGTCTTTGA
AATTGCCAATGATACAGATTAAAAAGCCTGAAAAGCTAGATCGTAACCCA
ATGACAAGATTgaataattatttaaaaaagggCACGATTTCATCAAACTC
TGCAACTCAGATTATGAAGAAAGTGTCACTGTTAAGTCTTGACAAACCAT
TTTCTGTAGAGCAACCTGAATTTAAATGTCAACATCCTAAAAATGCACCA
TTCCCAAAGGAAAAGACTTCAATCTTTATGAACGATATTCAATCTTCACT
AGAAATGTTGGAGCAGAATGATGCATTTGTTGTGGAATATGTCAGACGTT
TACTGCAGTATTTGAATTCTTTGGAACAGCTATTTAGCAATCAAACATCG
AAAGATAGAGCAAGTCAACAAGCCTCTAGCTCTAATAAAGATACTGGGAA
AAAGCGAAAAGACAGTAGTGGGACACCTTGTAATATATGTAATCAGTTGT
ATCAAATTGGAATATTATGTTTGTTTACGTTGAAGGAATCGTGCTTGACT
TATCGTTCAGTTTGTACCTATTTGTTGAGTTGCTTTGAAACGAGACGTTC
GAAATCcaagaaaaatgtcaaattaGATGGTGTATCAGAGCAAATGAAAC
AAGAAATATCAGTGGACGAagagaaatatttcaaaaagctaCCAGACACC
AATATCTTAATAAAGAAAATGAAtgaaatcaatataaaaattcACACCAC
TACACNAATTATCATTTAGAAAATGAATGAAATCAATATCAAAATTCACA
CCACTACACCAAACACTTCAACCGGTCAATCGCTTTGGGAGAACTTACTT
TACCTTAGGAAAAGTAAAcTTTGGACATGTACGTTGGAGGAGTtgtgttt
tgaatttcaagtcaACTTATTGTTTTGGTCAACGAAATTACCAGAAGCTA
GTTGTTTTGTGAAATGGTTGCAGAACAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_139:487863..498756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047885 ID=TCONS_00047885|Name=TCONS_00047885|organism=Clytia hemisphaerica|type=transcript|length=10894bp|location=Sequence derived from alignment at scaffold_139:487863..498756+ (Clytia hemisphaerica)
tttaagAAACCAAACTAACATGCAACTCAATGGACTGAAATTCGAACATA
TGTGTTATGGGAAGAATGAAGAGCTGAAACCAAATTCAGTTTATTATTCT
GATACCAAGGACCAAATTGAAACCAAAAACCAAGTCAAACAAAGACCTTG
GAACATCAGCTCATGGATATTCCCAACCTTCAAGACACAGGACACTGATG
TAATGCTAACCCTTTGGAAGTCACTTGCTATTCCACACCTTGACTATTGC
TCCCAACTATGGTCTCCGTCAAAGTGATGCCTCATCCAACAATTGGAGCT
GctgcaaaaatcatttttgaactCGTTGAACCAGTTGAATTATTGGGAAA
AATTGAGTCAACTGAAAATTTACAGTCttgaaagaagaagagaaaGGTAC
AGAATAATCTACACATGGTGCATACTAAAAGATATCACTCCAAACTTCAA
TTACAGCGATGATGCAGGCGGCGTGCATTTGTACACAAACCAGAGACTGG
GTAGAAAATGTAATTTAAAAGCCGTTAATGtcaaacatgaaaatatttgg
AGGGATTGTCTCTCACAGGAAGGACCAAGACTTTTTAACGCTCTGCCAAA
ATCCCTTCGAAACCTTACAAAATGTaccaaacaaacttttaaacaaCATC
TTGACCAATTCCTGAATACACTGCCAGAGGAACCACTGCTTCCTAATTAT
TTCAACTTCAGGAGAGCTGATTCCAACAGTATATCAGTAATGGTCAATCA
TCGGATTCCACGAATTGGATGAGTACCATAAAGTGCAAAATCAAAAACGA
AGTATCACGAAGAAGTaagtaattttatttgaaagtccttacctttatga
gaaaaatgaggggtcatttattagaattggttaagtattcccaaagttac
agtattccattttcaaaacacaaaaaaatcaccttttcaaagaatcgcct
ccttacacctcGCCatcgccagcaagaaataattttcggaagcaccaaaa
tcgcgccaaaaatggcggatgaaatctagtcttctgTGTGacggggtgtg
gggagttttgccgGTGCGGTTTGAAAATCAGCCTGATTAAACTTTAGCAC
TGCatggtgcttaaatgaaaaatccgcaatcttgttaaaaaattgcaatt
tcttctgatttcttcttatttttcgaaattccagactgcctgtagatttt
caaataaagcactttgtgatagattgtagcctaatcttaccctgggttta
ctaaaaaaaccgcgattgaaaagatgaaccagctcagcgagagccatttg
tttcaaagtgggtcgagaattttccggtgccgtggtcagcgctaaatcgc
gttttcaccttggcgtcgaaaaacatgaatatctttggaaagaaaataga
tacctggatgcagttttttttacttgctTCCCTAATAATTTctgattgat
taaaaaaaaaatgaacagatttggatgatttaaaggtaagttctaatgca
ttgaagttcatttttgtaaattcttcctcgttctgGGCAAAAAATCCtca
cgagtgcgcaccctagtTATGATGACAAACGTTATCAGGGATTTTGATTA
CGGTGCCCCTTATTAACAGTCAATCAGGGCTTCCTTGGTCTACTTTTTAA
ACATTACATTAGCtcagatagaataaaaacatacctgatcaacacatcca
aaccttctgtcttgcgtttactctttccttcccaacaactttcgtttttg
gttatacaggttttaaaatccataagtaatgaacctcttataacTCTATC
TGAATAAATCTTCTTGAAAagcttctgtcaggtttcattccatacgtttt
ttatccatacACATGGTGAACTCACGCGTGTTTGGTTTGGGAACACGAAC
ACAAACTGccaatgtctaaacttttcaatatatgtCCAGAACTaatagat
tttttgaaattctgtaaaaagatccaaattcctgaatagttttactatgt
tctaaaccatcagtgaaatactcgttcatctatttaagattgaagacaaa
aattagcgaagaaaaataaaccttgagcacaaaaaatgcttttttaaaca
cttttttcCACCAAAAAACAAATATCTTTTATAGACTTACCTTCCCCAAA
CATTGAAGAAGTGTAGCTACTAATTAAAGTAAATGAGATAAGATAAGATA
AAACCTTAAAATCAACCAGAATCTACAACCTTTTGTCCAAAGCAAAAGAC
GTGCTTTTCTTGTCgccatcttgttttagaatgagaattattttaGGTTC
CAGTTCACACGGTCTTCTTTtcataaaatagaaatacatggggtcacact
actggctacaggaactgaaagcaaacaattaaggccaatatgtttggttt
ttctgaaggacaaaaggtataggacgctttactgaaggagggataaggct
gggcctttctatttaaaagaaatggacaaaaaaaggcaaaaaaagatttt
acttagaaactttaattctcttacctcCGTCCTGGGCCAACTTGATATGA
Gcgagggaaccatgttggccacccctactgaaaatttccgattaaaacaa
acaaggaattaatttcTGTAACTCaattaaaattggaaaaagctgggttt
ttgactgtttctgatcctaaagtgctattttttggtaaaagctatgcaat
ttaggtttggatttctagaaagcttacccattcattgtcaatatatcttt
tatttgaaagtaattgcttcttgaaataaaaagatatagtcaaatcttgt
agggtcatttttcaaagatattttgcttaaattgatttttgcattttgca
aTTTTACCCTTTGCAAACGCACGTGAACTGGTTTCACCGATTTCAtgata
attgaaaattgaaactttcctgGGGCTGGGGTGCAATTGAATTGGGCATA
CCGCCATcacaaaatatctttcatgaaaatttaccgtattctaacgctga
tataatctagataggaaacaaatattaaatttgacatAAAATGGCaatta
tatatttattttttcatctttttttcgATTAacatgctgaatcagcagaa
aagtaaaaaaagtaaaaaaataaaaattgtagtttttttaattattgaac
AGGTGGTATTTGGCACCCTCACAATTAGTAGGCCCACCTTGCCtcgtata
tttttgttttcaactggtttctGTCAGAATGCGGACTAGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaaaaattaaaaaaaagaggacccaccccctcattttggtatcgatac
caacttaaagattcccttattttcaaaaaaagggggacccaccccctcat
tttagtatcaataccaacttgactttttgaaatttgaaaaaaaaaattga
caccacccctggccctgggtttggtatctggaaaaagctgaaaaattgaa
aaaattacttttaaagatcCGGAAAACCTTTCCCTCTATATACTGTAATT
GTAcatttttcaaacacctctgatgTCTTTTCCCTTATAACATATcatgg
ttaaaaaaatttccgtTTTCCACAATAGTTGCTGAAAAGAGCAGTAATAA
TTGTAGTGTAATGATATGTCATTATCAATGCTGTGCATACTTTTTCAGCA
CcttgcatattttgtcaacatcccaACATcctttcattggataaatacca
ctaaaatatacaagataagtaaacattaAATTATCTCATGGGTGCACGGC
TTTGCTAAACACACCTATCtcattcattatctaagaatttaAGCGGCTgg
aagcgggcaaagattaccacACAGGCTGATGACGCTGGATGACGGAcaaa
ggttttttgaagatattttcagttataatccaatttagaaaaaactaaac
atagaaagggggtatttttaaTTCTATATACGATGATcagcatttttttt
ttgattttttcacccAGCCCCCCCCCGTCGTTATNTGGATGACGGAcaaa
ggttttttgaagatattttcagttataatccaatttagaaaaaactaaac
atagaaagggggtatttttaaTTCTATATACGATGAtcagcatttttttt
tttttttcacccagCCCCCCGTTGTTAagaacctttgcttgaaatcaaaa
GCGAAACCAAAATATTATAGCACTCCCTGCCATGTGCGTGGAAAGCACAT
AATTTTTTGCGTATTTTCTCTCATTTTGTTTGAAAACCGCCAATTCTAAG
GTGCAATCTGACAgtagattttatttcaattccatgtttttctgaaaatc
atgCATTATGATGTTTGaaaagattcctctctagccctgGGTCTCTAGCC
CTCAGGGTTTAAAACCCAATTGTTCTGAGTTATCCCCAATATTTAATCAT
CAGTTATAATCAGTCTagtaaatattttcatattttactttcagaaaagt
aataaaaaatttaaagtattaCTCTAAAGAATCATCAATATGGCTGTAAG
TATTGTGTGAAAATCAATTTatcatataaaaaaaagcgGCTGAATTGGCA
TTATATAAATTTTTAAGTACATTCTGGTAATCCTttggagatttcaaaaa
tgcaacaaaaatgcAACCTATTTCATTTTATCTCCCAATGTAAACGGAAA
ATTTGTCAACATTGATCATAAGTTATCATTTATCTTCTCTACTTTCAGGA
ggaaagaaaaaccaaaaagacTTCCATTTTGGATTTATCTAAATACATGG
ATAAAGCAATCCGTGTCAAGTTCAGTGGTGGTCGAGAAGGTGAGCATCTT
TTGTTTAACCTGTTTTGTAATAATTGAACTTTCTTTTCTTATCAGGGATA
ATTAATAGTCAGGAAATTTTGGTACAGAATCACTAAGGTACTCTTTTGAG
AAGTTTTGTGaattattttctccatttaGCCCTTTTAAACCTCCCATTTC
ATTTTAAAAGCATCTTTTAATCTTATATTCTAtcctttgtgttttttttt
agttgCTGGTGTCTTGAAAGGATTTGATCATCTTTTAAACATTGTATTGG
ACAATTGCACAGAATTCATGAgaggtaaaataaaaaaattataaaaacct
TTTGAACACAGAACAATTTAACTGACAGAATTTGATTTATTTAGTAGGTA
GATCTTACCCAAGAATCTTAAGTTTTAAAGTCTTTGCTATTTCTTGTTTT
TCAGATTCTGAAGATCCTTATAAAATTACGGATGAGACAAGAGACTTAGG
TATTGTAGTATGCAGAGGAACAGCTGTTGTTATGATTTGCCCAGTAGATG
GGATGGAAGCTATAGCAAATCCTTTCGTTCAACAAGATGCTTGAGCGAAG
AATGTAAAATGAAAGAGCAATTTCCAAGTGTTTTTGCTTGAGTTTACGAT
TTGGATTTAAAGAATTTCCAACAAAGGAAGAGATGGCTTTTTGCTGAAAT
CTATagaaatattttgagttttgttatTTTGAGTTCTCTCGTTGCACTCA
ACAAGAAGGAAATTTGCATAAATTGCCCCAAAAGGAAGAAATGCTGATGA
TTGGATTAGCTATTGGAGAGACAAAAAGGAAATAAACTATATTGGACATC
CATTTCttacaaattttttactttgtaaagtgtttttgtataatttattt
AGTAGTTTGATTTTATCattgcgtttaaaatgggggaTGGTTAACGACTC
TTTAGTGTCAGTTATTTTCTGGAGGACTTGTATAACCTCTTGGAGAGGTG
TTTTTACCTTGACCCGATTTGTGAAGAGATTGAATTTATGGTGTTTTTTC
ACTTGTGTTTGTTGTCACAATGAGCCTTTCAGtaaagattttgtcttttt
tattaaaGTCTTATTAACGTGACCTCCTAATGTTTCTTtatctgttttgt
ttttagagAAATAAGTAATAGATGATTATGGCTGAAAACaactcaaaaaa
gaaaagatttatatACAAATCAGTGCTTGGAAATGCgtcaacaaaacaaa
agaaacacgAACCAGCACCTCCACTGGTAGACTTTCCTGATGACTTCGAT
ACTTTCACACAACCAACCAAGAAAATGAAGTTGGATCTTGAAAAATCTCC
AACAACtgcacaaaaaaagaaaattgaaaagacagataattattttgatg
acaTAAACTTTGACGATGATGATGCCtttgatttgaaagaaattgacGAG
ATAGAGATTGCAGCTTCACAGCAACTTGGTCTAAAGCCTAAAACCAATCC
GGTCAAATCAACGATCAAAGACCCTTTAGACCAGTTACTTGAAGATACAC
AACATATCAGACCTTCAATCGCTAATGGAAGATCTACAGCCTTTATGCCC
CCTAAGGATAGGCCTGGCCCTAGTACTtcaaacaaatatcaaaataatga
cAGAACAGTACATTTGCCACTGTCACAAAGAAATGATTCATACAAAAATA
AGCTACCTGTCAATCAAAATTCCACTACTATGAACGCACCAAGTAACAGG
ACTAATGGACATAGCACTTCCATTTATAATcatagaaatagaaatgaaaC
TTACACTGAACAACAGCAAATAAATATTCAGAACGAGGCTGAAAAGAAGA
GGAACCTTGAAGAATCATTTCAAAAACAATACCATCAAGCACAAAAGACT
GTCACTGAATACAAAACTAAACTCGACACCATGCAGAAGAAGTTTAACTC
TAAAGATGGAGAGATTAAgattttgagagagaaattaCGTAAATCTTccg
aaaatgaaatgaaaataaaggaaagGCTTGTCACTTTGGAGAGTTCTTCC
AAAACAGAACAAAGTAAGAAAGAATCTGACTTATTAAAGGAAGTTGAGAA
ATTGAAAACACAAttgaaattcaaagaaaatgaagTCAAGGAAGCAATAT
CTAAACAAAAACAACTTGAGAGACAACCAAGGGTGAAACCTCCACTTAAA
AGTCCGATCAAGGATAATAAAATACCAGATGGATTCCAACAGACTAAAGA
AACTAAGGAAAAAGACAAGTCTTTGAAATTGCCAATGATACAGATTAAAA
AGCCTGAAAAGCTAGATCGTAACCCAATGACAAGATTgaataattattta
aaaaagggCACGATTTCATCAAACTCTGCAACTCAGATTATGAAGAAAGT
GTCACTGTTAAGTCTTGACAAACCATTTTCTGTAGAGCAACCTGAATTTA
AATGTCAACATCCTAAAAATGCACCATTCCCAAAGGAAAAGACTTCAATC
TTTATGAACGATATTCAATCTTCACTAGAAATGTTGGAGCAGAATGATGC
ATTTGTTGTGGAATATGTCAGACGTTTACTGCAGTATTTGAATTCTTTGG
AACAGCTATTTAGCAATCAAACATCGAAAGATAGAGCAAGTCAACAAGCC
TCTAGCTCTAATAAAGATACTGGGAAAAAGCGAAAAGACAGTAGTGGGAC
ACCTTGTAATATATGTAATCAGTTGTATCAAATTGGAATATTATGTTTGT
TTACGTTGAAGGAATCGTGCTTGACTTATCGTTCAGTTTGTACCTATTTG
TTGAGTTGCTTTGAAACGAGACGTTCGAAATCcaagaaaaatgtcaaatt
aGATGGTGTATCAGAGCAAATGGTAAGATTTCTCAGGAATTATATCCCTT
ATATTTATAAGCAAGAGGTTTTATTCATCACATCACTTAAAAGAAAATTG
TCAAAGTCTGAAATTCAAAACACATGACTTTATTCATAGTTATTACGATG
AAGTTTATACAGATTTGTGATTCTCCTGGTTATAGATGGTCAAATCTACC
TTTGCCTGTGAAGGTAACCCATATCTCTATGGTACAAATGTCGTTCTGAT
GAATGTTGTGGACGGAGATATAATTTCTTTAAGAAAAGTCGTTTTGTCAA
TACTGACCATGCTACCCCTTTTTAAATAGTGCtttaaggcgagaccaatt
taatttgttgttctacgtgcccgaccgaccctatttttgctaaaatcaaa
aaaataataatattgaatttccacgaCAATACTGACACActatcaaattt
gaataaagctgaaaattaattcaagaaattgaaaatttagaaaatcaagc
attccatacactaagattttattatgaagttcatcgaagataaaaaaaag
tgaatttttgatccatatatttttggaaaaaattttcggtactttaccaa
ccctgataaaggtaaaatttattcttattttaccgaccgaccgacccata
ttttgccAACGAtttgcccgtagaacaacaaattaaattggtctcgccta
accAGAAGAATTCTTACAATATGCCTAATTTCTTTTCTAGAAACAAGAAA
TATCAGTGGACGAagagaaatatttcaaaaagctaCCAGACACCAATATC
TTAATAAAGGTATGGTAGTAATTGACCGATTTTGACTGCATTTTTCGATC
CCATCTTATATGAATCAACAACTCTCGAggataggaaatatttagtggat
tATGTTGCTACTTTTGATACGTTTTGATTTACTTTCATACTTTTTAATTA
TCATTTAGAAAATGAAtgaaatcaatataaaaattcACACCACTACACNA
ATTATCATTTAGAAAATGAATGAAATCAATATCAAAATTCACACCACTAC
ACCAAACACTTCAACCGGTCAATCGCTTTGGGAGAACTTACTTTACCTTA
GGAAAAGTAAAGTAGGTTTGTCAAatcttttttcatgaatcctAAAACTT
TTTCTCAATGATTTCTCAAAGATTAGTCCTATATTCACAAATACTTAAGT
TAAATCTTAGAATCAAAAATTAAGGAAATCTAAATTTTGGTTTTGTGAAA
TTGCTTTGCCTGTTAGGTTAGCTATGGTCTTTGACAGATTTAAAAATGTT
GATATACTCCTATATTTACGGATAGTGAAAAATCTTGGAATCAAAAATTA
GGGAAATCTAAATTTGAACTTTGAGAAATAGCTTTGCGTTCTTTGTTAGA
TATTTTAACGGCTTGCAAAatgattttttgtcattttcagcTTTGGACAT
GTACGTTGGAGGAGTtgtgttttgaatttcaagtcaACTTATTGTTTTGG
TCAACGAAATTACCAGAAGCTAGTTGGTTAGTTAAATGATgtctttttat
ttcaagaatATTGCATCATTAGAATATTATGCATTGTCTGAATAGAAGGG
TTGTGTTAATATGTCAAAATGACTAGTTATTAACTGTAACTGCAGGTAGT
ATAAAAAACTGAGATCCATACTTTCTTGACCATTCCTATTCAGCTTAACT
ATTCTACTTTAATTTTAGTTTTGTGAAATGGTTGCAGAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030473XLOC_030473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047885-exon-scaffold_139-1491911889:487863..488676TCONS_00047885-exon-scaffold_139-1491911889:487863..488676Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:487863..488676TCONS_00047885-exon-scaffold_139-1510915933:487863..488676Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:487863..488676TCONS_00047885-exon-scaffold_139-1575043694:487863..488676Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:493857..493907TCONS_00047885-exon-scaffold_139-1491911889:493857..493907Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:493857..493907TCONS_00047885-exon-scaffold_139-1510915933:493857..493907Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:493857..493907TCONS_00047885-exon-scaffold_139-1575043694:493857..493907Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:494111..494201TCONS_00047885-exon-scaffold_139-1491911889:494111..494201Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:494111..494201TCONS_00047885-exon-scaffold_139-1510915933:494111..494201Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:494111..494201TCONS_00047885-exon-scaffold_139-1575043694:494111..494201Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:494415..494486TCONS_00047885-exon-scaffold_139-1491911889:494415..494486Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:494415..494486TCONS_00047885-exon-scaffold_139-1510915933:494415..494486Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:494415..494486TCONS_00047885-exon-scaffold_139-1575043694:494415..494486Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:494617..497034TCONS_00047885-exon-scaffold_139-1491911889:494617..497034Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:494617..497034TCONS_00047885-exon-scaffold_139-1510915933:494617..497034Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:494617..497034TCONS_00047885-exon-scaffold_139-1575043694:494617..497034Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:497753..497821TCONS_00047885-exon-scaffold_139-1491911889:497753..497821Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:497753..497821TCONS_00047885-exon-scaffold_139-1510915933:497753..497821Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:497753..497821TCONS_00047885-exon-scaffold_139-1575043694:497753..497821Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:497971..498123TCONS_00047885-exon-scaffold_139-1491911889:497971..498123Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:497971..498123TCONS_00047885-exon-scaffold_139-1510915933:497971..498123Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:497971..498123TCONS_00047885-exon-scaffold_139-1575043694:497971..498123Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:498453..498538TCONS_00047885-exon-scaffold_139-1491911889:498453..498538Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:498453..498538TCONS_00047885-exon-scaffold_139-1510915933:498453..498538Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:498453..498538TCONS_00047885-exon-scaffold_139-1575043694:498453..498538Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1491911889:498731..498756TCONS_00047885-exon-scaffold_139-1491911889:498731..498756Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1510915933:498731..498756TCONS_00047885-exon-scaffold_139-1510915933:498731..498756Clytia hemisphaericaexon
TCONS_00047885-exon-scaffold_139-1575043694:498731..498756TCONS_00047885-exon-scaffold_139-1575043694:498731..498756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:487863..498756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	30.0687	33.3212	3.75242	3.0775	5.18975	4.98731	6.85602	5.70173	4.9075	3.78403	1.50163	1.65851	1.72112	1.58807	6.88036	4.58914	0	0.752024	3.41725	4.05539	0	0	0	2.58629	4.80434	1.16052	0	0
Blast
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BLAST of TCONS_00047885 vs. Swiss-Prot (Human)
Match: LSM7 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.101e-43
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 2 
Query:  860 MAEERKTKKTSILDLSKYMDKAIRVKFSGGREVAGVLKGFDHLLNIVLDNCTEFMRDSEDPYKITDETRDLGIVVCRGTAVVMICPVDGMEAIANPFVQQ 1159
            MA++ K KK SILDLSKY+DK IRVKF GGRE +G+LKGFD LLN+VLD   E+MRD +D YK+T++TR LG+VVCRGT+VV+ICP DGMEAI NPF+QQ
Sbjct:    1 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQ 100
The following BLAST results are available for this feature:
BLAST of TCONS_00047885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM77.101e-4370.00U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
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