TCONS_00047886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047886
Unique NameTCONS_00047886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047886 ID=TCONS_00047886|Name=TCONS_00047886|organism=Clytia hemisphaerica|type=transcript|length=4677bp
tttaagAAACCAAACTAACATGCAACTCAATGGACTGAAATTCGAACATA
TGTGTTATGGGAAGAATGAAGAGCTGAAACCAAATTCAGTTTATTATTCT
GATACCAAGGACCAAATTGAAACCAAAAACCAAGTCAAACAAAGACCTTG
GAACATCAGCTCATGGATATTCCCAACCTTCAAGACACAGGACACTGATG
TAATGCTAACCCTTTGGAAGTCACTTGCTATTCCACACCTTGACTATTGC
TCCCAACTATGGTCTCCGTCAAAGTGATGCCTCATCCAACAATTGGAGCT
GctgcaaaaatcatttttgaactCGTTGAACCAGTTGAATTATTGGGAAA
AATTGAGTCAACTGAAAATTTACAGTCttgaaagaagaagagaaaGGTAC
AGAATAATCTACACATGGTGCATACTAAAAGATATCACTCCAAACTTCAA
TTACAGCGATGATGCAGGCGGCGTGCATTTGTACACAAACCAGAGACTGG
GTAGAAAATGTAATTTAAAAGCCGTTAATGtcaaacatgaaaatatttgg
AGGGATTGTCTCTCACAGGAAGGACCAAGACTTTTTAACGCTCTGCCAAA
ATCCCTTCGAAACCTTACAAAATGTaccaaacaaacttttaaacaaCATC
TTGACCAATTCCTGAATACACTGCCAGAGGAACCACTGCTTCCTAATTAT
TTCAACTTCAGGAGAGCTGATTCCAACAGTATATCAGTAATGGTCAATCA
TCGGATTCCACGAATTGGATGAGTACCATAAAGTGCAAAATCAAAAACGA
AGTATCACGAAGAAaaaagtaataaaaaatttaaagtattaCTCTAAAGA
ATCATCAATATGGCTGAggaaagaaaaaccaaaaagacTTCCATTTTGGA
TTTATCTAAATACATGGATAAAGCAATCCGTGTCAAGTTCAGTGGTGGTC
GAGAAGttgCTGGTGTCTTGAAAGGATTTGATCATCTTTTAAACATTGTA
TTGGACAATTGCACAGAATTCATGAgagATTCTGAAGATCCTTATAAAAT
TACGGATGAGACAAGAGACTTAGGTATTGTAGTATGCAGAGGAACAGCTG
TTGTTATGATTTGCCCAGTAGATGGGATGGAAGCTATAGCAAATCCTTTC
GTTCAACAAGATGCTTGAGCGAAGAATGTAAAATGAAAGAGCAATTTCCA
AGTGTTTTTGCTTGAGTTTACGATTTGGATTTAAAGAATTTCCAACAAAG
GAAGAGATGGCTTTTTGCTGAAATCTATagaaatattttgagttttgtta
tTTTGAGTTCTCTCGTTGCACTCAACAAGAAGGAAATTTGCATAAATTGC
CCCAAAAGGAAGAAATGCTGATGATTGGATTAGCTATTGGAGAGACAAAA
AGGAAATAAACTATATTGGACATCCATTTCttacaaattttttactttgt
aaagtgtttttgtataatttatttAGTAGTTTGATTTTATCattgcgttt
aaaatgggggaTGGTTAACGACTCTTTAGTGTCAGTTATTTTCTGGAGGA
CTTGTATAACCTCTTGGAGAGGTGTTTTTACCTTGACCCGATTTGTGAAG
AGATTGAATTTATGGTGTTTTTTCACTTGTGTTTGTTGTCACAATGAGCC
TTTCAGtaaagattttgtcttttttattaaaGTCTTATTAACGTGACCTC
CTAATGTTTCTTtatctgttttgtttttagagAAATAAGTAATAGATGAT
TATGGCTGAAAACaactcaaaaaagaaaagatttatatACAAATCAGTGC
TTGGAAATGCgtcaacaaaacaaaagaaacacgAACCAGCACCTCCACTG
GTAGACTTTCCTGATGACTTCGATACTTTCACACAACCAACCAAGAAAAT
GAAGTTGGATCTTGAAAAATCTCCAACAACtgcacaaaaaaagaaaattg
aaaagacagataattattttgatgacaTAAACTTTGACGATGATGATGCC
tttgatttgaaagaaattgacGAGATAGAGATTGCAGCTTCACAGCAACT
TGGTCTAAAGCCTAAAACCAATCCGGTCAAATCAACGATCAAAGACCCTT
TAGACCAGTTACTTGAAGATACACAACATATCAGACCTTCAATCGCTAAT
GGAAGATCTACAGCCTTTATGCCCCCTAAGGATAGGCCTGGCCCTAGTAC
TtcaaacaaatatcaaaataatgacAGAACAGTACATTTGCCACTGTCAC
AAAGAAATGATTCATACAAAAATAAGCTACCTGTCAATCAAAATTCCACT
ACTATGAACGCACCAAGTAACAGGACTAATGGACATAGCACTTCCATTTA
TAATcatagaaatagaaatgaaaCTTACACTGAACAACAGCAAATAAATA
TTCAGAACGAGGCTGAAAAGAAGAGGAACCTTGAAGAATCATTTCAAAAA
CAATACCATCAAGCACAAAAGACTGTCACTGAATACAAAACTAAACTCGA
CACCATGCAGAAGAAGTTTAACTCTAAAGATGGAGAGATTAAgattttga
gagagaaattaCGTAAATCTTccgaaaatgaaatgaaaataaaggaaagG
CTTGTCACTTTGGAGAGTTCTTCCAAAACAGAACAAAGTAAGAAAGAATC
TGACTTATTAAAGGAAGTTGAGAAATTGAAAACACAAttgaaattcaaag
aaaatgaagTCAAGGAAGCAATATCTAAACAAAAACAACTTGAGAGACAA
CCAAGGGTGAAACCTCCACTTAAAAGTCCGATCAAGGATAATAAAATACC
AGATGGATTCCAACAGACTAAAGAAACTAAGGAAAAAGACAAGTCTTTGA
AATTGCCAATGATACAGATTAAAAAGCCTGAAAAGCTAGATCGTAACCCA
ATGACAAGATTgaataattatttaaaaaagggCACGATTTCATCAAACTC
TGCAACTCAGATTATGAAGAAAGTGTCACTGTTAAGTCTTGACAAACCAT
TTTCTGTAGAGCAACCTGAATTTAAATGTCAACATCCTAAAAATGCACCA
TTCCCAAAGGAAAAGACTTCAATCTTTATGAACGATATTCAATCTTCACT
AGAAATGTTGGAGCAGAATGATGCATTTGTTGTGGAATATGTCAGACGTT
TACTGCAGTATTTGAATTCTTTGGAACAGCTATTTAGCAATCAAACATCG
AAAGATAGAGCAAGTCAACAAGCCTCTAGCTCTAATAAAGATACTGGGAA
AAAGCGAAAAGACAGTAGTGGGACACCTTGTAATATATGTAATCAGTTGT
ATCAAATTGGAATATTATGTTTGTTTACGTTGAAGGAATCGTGCTTGACT
TATCGTTCAGTTTGTACCTATTTGTTGAGTTGCTTTGAAACGAGACGTTC
GAAATCcaagaaaaatgtcaaattaGATGGTGTATCAGAGCAAATGAAAC
AAGAAATATCAGTGGACGAagagaaatatttcaaaaagctaCCAGACACC
AATATCTTAATAAAGAAAATGAAtgaaatcaatataaaaattcACACCAC
TACACNAATTATCATTTAGAAAATGAATGAAATCAATATCAAAATTCACA
CCACTACACCAAACACTTCAACCGGTCAATCGCTTTGGGAGAACTTACTT
TACCTTAGGAAAAGTAAAcTTTGGACATGTACGTTGGAGGAGTtgtgttt
tgaatttcaagtcaACTTATTGTTTTGGTCAACGAAATTACCAGAAGCTA
GTTGTTTTGTGAAATGGTTGCAGAACAAAGATCATCTTCTTAATTATCTC
TCTAAACACAAACCAAAAAGAGTGCTTCAAGTCATTCAGTTACTTACCAA
TTGTGTTGGTATAAAGGAGATAACAAAATTACTCTGTGCAAATTCAGaac
GATGTCCACTTCTGACAGTGTATAACACTTTCCTGTTGGCCCCTGAGGGT
ACCGGACCTCAAGATCTCTTCGACATATTTCGTTCAgTAGTACGTTTATT
CTCTTCCCTGATAGCACAACCTGAATTGAATGCTTACCAAGTACTGTTGT
CTTCCAAATGTCAATGCTCGAATGATATCATCGAATGTTTCATTACATAT
CTTTACGACGAATTCAAGGATATCAGTAAAAGTATATTCAACCCTCTCTC
AACGGAAGTCAAGACTAACAAACATTACAGGGAGCGGCTATCAGCGTTCC
GTGATGGTATGTCATTATTTTGCAAATTATGTGTAAACGATAAAATGTTG
AGTGAAAAGCGAGCAGCAGTCGAGTGGAGTTATTTCAATCTGTTGGCTGG
TACCCGACGGATGTACCGAAAGATCCCAGAAGTCAGTGAAAGTGAGGTAC
ACCCAATAGAAGATTTACTGGAGCAGtattatgattttgatgaagatatG
GAGGACGTTGCTATGCAACaatcacaacaacaacaacaacagaccACTCA
TGAGCAATGATCCTATAGTTTTCTCCCCTAGGAAGGGGCTGTGTTTGACa
tagtatttattttttgttgcttCCTTATAATAATGGCGTTAGTTATAGCG
CTCACGGACGATATTATTATGTTattgtttaattttacttttaaaatctt
tatttttcaaattggttGAGTTTGTTATGATaaatataattaaaataaaa
atgaaagatacTAGAACACCGGCTAGA
Run BLAST on NCBI

transcript from alignment at scaffold_139:487863..502257+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047886 ID=TCONS_00047886|Name=TCONS_00047886|organism=Clytia hemisphaerica|type=transcript|length=14395bp|location=Sequence derived from alignment at scaffold_139:487863..502257+ (Clytia hemisphaerica)
tttaagAAACCAAACTAACATGCAACTCAATGGACTGAAATTCGAACATA TGTGTTATGGGAAGAATGAAGAGCTGAAACCAAATTCAGTTTATTATTCT GATACCAAGGACCAAATTGAAACCAAAAACCAAGTCAAACAAAGACCTTG GAACATCAGCTCATGGATATTCCCAACCTTCAAGACACAGGACACTGATG TAATGCTAACCCTTTGGAAGTCACTTGCTATTCCACACCTTGACTATTGC TCCCAACTATGGTCTCCGTCAAAGTGATGCCTCATCCAACAATTGGAGCT GctgcaaaaatcatttttgaactCGTTGAACCAGTTGAATTATTGGGAAA AATTGAGTCAACTGAAAATTTACAGTCttgaaagaagaagagaaaGGTAC AGAATAATCTACACATGGTGCATACTAAAAGATATCACTCCAAACTTCAA TTACAGCGATGATGCAGGCGGCGTGCATTTGTACACAAACCAGAGACTGG GTAGAAAATGTAATTTAAAAGCCGTTAATGtcaaacatgaaaatatttgg AGGGATTGTCTCTCACAGGAAGGACCAAGACTTTTTAACGCTCTGCCAAA ATCCCTTCGAAACCTTACAAAATGTaccaaacaaacttttaaacaaCATC TTGACCAATTCCTGAATACACTGCCAGAGGAACCACTGCTTCCTAATTAT TTCAACTTCAGGAGAGCTGATTCCAACAGTATATCAGTAATGGTCAATCA TCGGATTCCACGAATTGGATGAGTACCATAAAGTGCAAAATCAAAAACGA AGTATCACGAAGAAGTaagtaattttatttgaaagtccttacctttatga gaaaaatgaggggtcatttattagaattggttaagtattcccaaagttac agtattccattttcaaaacacaaaaaaatcaccttttcaaagaatcgcct ccttacacctcGCCatcgccagcaagaaataattttcggaagcaccaaaa tcgcgccaaaaatggcggatgaaatctagtcttctgTGTGacggggtgtg gggagttttgccgGTGCGGTTTGAAAATCAGCCTGATTAAACTTTAGCAC TGCatggtgcttaaatgaaaaatccgcaatcttgttaaaaaattgcaatt tcttctgatttcttcttatttttcgaaattccagactgcctgtagatttt caaataaagcactttgtgatagattgtagcctaatcttaccctgggttta ctaaaaaaaccgcgattgaaaagatgaaccagctcagcgagagccatttg tttcaaagtgggtcgagaattttccggtgccgtggtcagcgctaaatcgc gttttcaccttggcgtcgaaaaacatgaatatctttggaaagaaaataga tacctggatgcagttttttttacttgctTCCCTAATAATTTctgattgat taaaaaaaaaatgaacagatttggatgatttaaaggtaagttctaatgca ttgaagttcatttttgtaaattcttcctcgttctgGGCAAAAAATCCtca cgagtgcgcaccctagtTATGATGACAAACGTTATCAGGGATTTTGATTA CGGTGCCCCTTATTAACAGTCAATCAGGGCTTCCTTGGTCTACTTTTTAA ACATTACATTAGCtcagatagaataaaaacatacctgatcaacacatcca aaccttctgtcttgcgtttactctttccttcccaacaactttcgtttttg gttatacaggttttaaaatccataagtaatgaacctcttataacTCTATC TGAATAAATCTTCTTGAAAagcttctgtcaggtttcattccatacgtttt ttatccatacACATGGTGAACTCACGCGTGTTTGGTTTGGGAACACGAAC ACAAACTGccaatgtctaaacttttcaatatatgtCCAGAACTaatagat tttttgaaattctgtaaaaagatccaaattcctgaatagttttactatgt tctaaaccatcagtgaaatactcgttcatctatttaagattgaagacaaa aattagcgaagaaaaataaaccttgagcacaaaaaatgcttttttaaaca cttttttcCACCAAAAAACAAATATCTTTTATAGACTTACCTTCCCCAAA CATTGAAGAAGTGTAGCTACTAATTAAAGTAAATGAGATAAGATAAGATA AAACCTTAAAATCAACCAGAATCTACAACCTTTTGTCCAAAGCAAAAGAC GTGCTTTTCTTGTCgccatcttgttttagaatgagaattattttaGGTTC CAGTTCACACGGTCTTCTTTtcataaaatagaaatacatggggtcacact actggctacaggaactgaaagcaaacaattaaggccaatatgtttggttt ttctgaaggacaaaaggtataggacgctttactgaaggagggataaggct gggcctttctatttaaaagaaatggacaaaaaaaggcaaaaaaagatttt acttagaaactttaattctcttacctcCGTCCTGGGCCAACTTGATATGA Gcgagggaaccatgttggccacccctactgaaaatttccgattaaaacaa acaaggaattaatttcTGTAACTCaattaaaattggaaaaagctgggttt ttgactgtttctgatcctaaagtgctattttttggtaaaagctatgcaat ttaggtttggatttctagaaagcttacccattcattgtcaatatatcttt tatttgaaagtaattgcttcttgaaataaaaagatatagtcaaatcttgt agggtcatttttcaaagatattttgcttaaattgatttttgcattttgca aTTTTACCCTTTGCAAACGCACGTGAACTGGTTTCACCGATTTCAtgata attgaaaattgaaactttcctgGGGCTGGGGTGCAATTGAATTGGGCATA CCGCCATcacaaaatatctttcatgaaaatttaccgtattctaacgctga tataatctagataggaaacaaatattaaatttgacatAAAATGGCaatta tatatttattttttcatctttttttcgATTAacatgctgaatcagcagaa aagtaaaaaaagtaaaaaaataaaaattgtagtttttttaattattgaac AGGTGGTATTTGGCACCCTCACAATTAGTAGGCCCACCTTGCCtcgtata tttttgttttcaactggtttctGTCAGAATGCGGACTAGCNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNaaaaattaaaaaaaagaggacccaccccctcattttggtatcgatac caacttaaagattcccttattttcaaaaaaagggggacccaccccctcat tttagtatcaataccaacttgactttttgaaatttgaaaaaaaaaattga caccacccctggccctgggtttggtatctggaaaaagctgaaaaattgaa aaaattacttttaaagatcCGGAAAACCTTTCCCTCTATATACTGTAATT GTAcatttttcaaacacctctgatgTCTTTTCCCTTATAACATATcatgg ttaaaaaaatttccgtTTTCCACAATAGTTGCTGAAAAGAGCAGTAATAA TTGTAGTGTAATGATATGTCATTATCAATGCTGTGCATACTTTTTCAGCA CcttgcatattttgtcaacatcccaACATcctttcattggataaatacca ctaaaatatacaagataagtaaacattaAATTATCTCATGGGTGCACGGC TTTGCTAAACACACCTATCtcattcattatctaagaatttaAGCGGCTgg aagcgggcaaagattaccacACAGGCTGATGACGCTGGATGACGGAcaaa ggttttttgaagatattttcagttataatccaatttagaaaaaactaaac atagaaagggggtatttttaaTTCTATATACGATGATcagcatttttttt ttgattttttcacccAGCCCCCCCCCGTCGTTATNTGGATGACGGAcaaa ggttttttgaagatattttcagttataatccaatttagaaaaaactaaac atagaaagggggtatttttaaTTCTATATACGATGAtcagcatttttttt tttttttcacccagCCCCCCGTTGTTAagaacctttgcttgaaatcaaaa GCGAAACCAAAATATTATAGCACTCCCTGCCATGTGCGTGGAAAGCACAT AATTTTTTGCGTATTTTCTCTCATTTTGTTTGAAAACCGCCAATTCTAAG GTGCAATCTGACAgtagattttatttcaattccatgtttttctgaaaatc atgCATTATGATGTTTGaaaagattcctctctagccctgGGTCTCTAGCC CTCAGGGTTTAAAACCCAATTGTTCTGAGTTATCCCCAATATTTAATCAT CAGTTATAATCAGTCTagtaaatattttcatattttactttcagaaaagt aataaaaaatttaaagtattaCTCTAAAGAATCATCAATATGGCTGTAAG TATTGTGTGAAAATCAATTTatcatataaaaaaaagcgGCTGAATTGGCA TTATATAAATTTTTAAGTACATTCTGGTAATCCTttggagatttcaaaaa tgcaacaaaaatgcAACCTATTTCATTTTATCTCCCAATGTAAACGGAAA ATTTGTCAACATTGATCATAAGTTATCATTTATCTTCTCTACTTTCAGGA ggaaagaaaaaccaaaaagacTTCCATTTTGGATTTATCTAAATACATGG ATAAAGCAATCCGTGTCAAGTTCAGTGGTGGTCGAGAAGGTGAGCATCTT TTGTTTAACCTGTTTTGTAATAATTGAACTTTCTTTTCTTATCAGGGATA ATTAATAGTCAGGAAATTTTGGTACAGAATCACTAAGGTACTCTTTTGAG AAGTTTTGTGaattattttctccatttaGCCCTTTTAAACCTCCCATTTC ATTTTAAAAGCATCTTTTAATCTTATATTCTAtcctttgtgttttttttt agttgCTGGTGTCTTGAAAGGATTTGATCATCTTTTAAACATTGTATTGG ACAATTGCACAGAATTCATGAgaggtaaaataaaaaaattataaaaacct TTTGAACACAGAACAATTTAACTGACAGAATTTGATTTATTTAGTAGGTA GATCTTACCCAAGAATCTTAAGTTTTAAAGTCTTTGCTATTTCTTGTTTT TCAGATTCTGAAGATCCTTATAAAATTACGGATGAGACAAGAGACTTAGG TATTGTAGTATGCAGAGGAACAGCTGTTGTTATGATTTGCCCAGTAGATG GGATGGAAGCTATAGCAAATCCTTTCGTTCAACAAGATGCTTGAGCGAAG AATGTAAAATGAAAGAGCAATTTCCAAGTGTTTTTGCTTGAGTTTACGAT TTGGATTTAAAGAATTTCCAACAAAGGAAGAGATGGCTTTTTGCTGAAAT CTATagaaatattttgagttttgttatTTTGAGTTCTCTCGTTGCACTCA ACAAGAAGGAAATTTGCATAAATTGCCCCAAAAGGAAGAAATGCTGATGA TTGGATTAGCTATTGGAGAGACAAAAAGGAAATAAACTATATTGGACATC CATTTCttacaaattttttactttgtaaagtgtttttgtataatttattt AGTAGTTTGATTTTATCattgcgtttaaaatgggggaTGGTTAACGACTC TTTAGTGTCAGTTATTTTCTGGAGGACTTGTATAACCTCTTGGAGAGGTG TTTTTACCTTGACCCGATTTGTGAAGAGATTGAATTTATGGTGTTTTTTC ACTTGTGTTTGTTGTCACAATGAGCCTTTCAGtaaagattttgtcttttt tattaaaGTCTTATTAACGTGACCTCCTAATGTTTCTTtatctgttttgt ttttagagAAATAAGTAATAGATGATTATGGCTGAAAACaactcaaaaaa gaaaagatttatatACAAATCAGTGCTTGGAAATGCgtcaacaaaacaaa agaaacacgAACCAGCACCTCCACTGGTAGACTTTCCTGATGACTTCGAT ACTTTCACACAACCAACCAAGAAAATGAAGTTGGATCTTGAAAAATCTCC AACAACtgcacaaaaaaagaaaattgaaaagacagataattattttgatg acaTAAACTTTGACGATGATGATGCCtttgatttgaaagaaattgacGAG ATAGAGATTGCAGCTTCACAGCAACTTGGTCTAAAGCCTAAAACCAATCC GGTCAAATCAACGATCAAAGACCCTTTAGACCAGTTACTTGAAGATACAC AACATATCAGACCTTCAATCGCTAATGGAAGATCTACAGCCTTTATGCCC CCTAAGGATAGGCCTGGCCCTAGTACTtcaaacaaatatcaaaataatga cAGAACAGTACATTTGCCACTGTCACAAAGAAATGATTCATACAAAAATA AGCTACCTGTCAATCAAAATTCCACTACTATGAACGCACCAAGTAACAGG ACTAATGGACATAGCACTTCCATTTATAATcatagaaatagaaatgaaaC TTACACTGAACAACAGCAAATAAATATTCAGAACGAGGCTGAAAAGAAGA GGAACCTTGAAGAATCATTTCAAAAACAATACCATCAAGCACAAAAGACT GTCACTGAATACAAAACTAAACTCGACACCATGCAGAAGAAGTTTAACTC TAAAGATGGAGAGATTAAgattttgagagagaaattaCGTAAATCTTccg aaaatgaaatgaaaataaaggaaagGCTTGTCACTTTGGAGAGTTCTTCC AAAACAGAACAAAGTAAGAAAGAATCTGACTTATTAAAGGAAGTTGAGAA ATTGAAAACACAAttgaaattcaaagaaaatgaagTCAAGGAAGCAATAT CTAAACAAAAACAACTTGAGAGACAACCAAGGGTGAAACCTCCACTTAAA AGTCCGATCAAGGATAATAAAATACCAGATGGATTCCAACAGACTAAAGA AACTAAGGAAAAAGACAAGTCTTTGAAATTGCCAATGATACAGATTAAAA AGCCTGAAAAGCTAGATCGTAACCCAATGACAAGATTgaataattattta aaaaagggCACGATTTCATCAAACTCTGCAACTCAGATTATGAAGAAAGT GTCACTGTTAAGTCTTGACAAACCATTTTCTGTAGAGCAACCTGAATTTA AATGTCAACATCCTAAAAATGCACCATTCCCAAAGGAAAAGACTTCAATC TTTATGAACGATATTCAATCTTCACTAGAAATGTTGGAGCAGAATGATGC ATTTGTTGTGGAATATGTCAGACGTTTACTGCAGTATTTGAATTCTTTGG AACAGCTATTTAGCAATCAAACATCGAAAGATAGAGCAAGTCAACAAGCC TCTAGCTCTAATAAAGATACTGGGAAAAAGCGAAAAGACAGTAGTGGGAC ACCTTGTAATATATGTAATCAGTTGTATCAAATTGGAATATTATGTTTGT TTACGTTGAAGGAATCGTGCTTGACTTATCGTTCAGTTTGTACCTATTTG TTGAGTTGCTTTGAAACGAGACGTTCGAAATCcaagaaaaatgtcaaatt aGATGGTGTATCAGAGCAAATGGTAAGATTTCTCAGGAATTATATCCCTT ATATTTATAAGCAAGAGGTTTTATTCATCACATCACTTAAAAGAAAATTG TCAAAGTCTGAAATTCAAAACACATGACTTTATTCATAGTTATTACGATG AAGTTTATACAGATTTGTGATTCTCCTGGTTATAGATGGTCAAATCTACC TTTGCCTGTGAAGGTAACCCATATCTCTATGGTACAAATGTCGTTCTGAT GAATGTTGTGGACGGAGATATAATTTCTTTAAGAAAAGTCGTTTTGTCAA TACTGACCATGCTACCCCTTTTTAAATAGTGCtttaaggcgagaccaatt taatttgttgttctacgtgcccgaccgaccctatttttgctaaaatcaaa aaaataataatattgaatttccacgaCAATACTGACACActatcaaattt gaataaagctgaaaattaattcaagaaattgaaaatttagaaaatcaagc attccatacactaagattttattatgaagttcatcgaagataaaaaaaag tgaatttttgatccatatatttttggaaaaaattttcggtactttaccaa ccctgataaaggtaaaatttattcttattttaccgaccgaccgacccata ttttgccAACGAtttgcccgtagaacaacaaattaaattggtctcgccta accAGAAGAATTCTTACAATATGCCTAATTTCTTTTCTAGAAACAAGAAA TATCAGTGGACGAagagaaatatttcaaaaagctaCCAGACACCAATATC TTAATAAAGGTATGGTAGTAATTGACCGATTTTGACTGCATTTTTCGATC CCATCTTATATGAATCAACAACTCTCGAggataggaaatatttagtggat tATGTTGCTACTTTTGATACGTTTTGATTTACTTTCATACTTTTTAATTA TCATTTAGAAAATGAAtgaaatcaatataaaaattcACACCACTACACNA ATTATCATTTAGAAAATGAATGAAATCAATATCAAAATTCACACCACTAC ACCAAACACTTCAACCGGTCAATCGCTTTGGGAGAACTTACTTTACCTTA GGAAAAGTAAAGTAGGTTTGTCAAatcttttttcatgaatcctAAAACTT TTTCTCAATGATTTCTCAAAGATTAGTCCTATATTCACAAATACTTAAGT TAAATCTTAGAATCAAAAATTAAGGAAATCTAAATTTTGGTTTTGTGAAA TTGCTTTGCCTGTTAGGTTAGCTATGGTCTTTGACAGATTTAAAAATGTT GATATACTCCTATATTTACGGATAGTGAAAAATCTTGGAATCAAAAATTA GGGAAATCTAAATTTGAACTTTGAGAAATAGCTTTGCGTTCTTTGTTAGA TATTTTAACGGCTTGCAAAatgattttttgtcattttcagcTTTGGACAT GTACGTTGGAGGAGTtgtgttttgaatttcaagtcaACTTATTGTTTTGG TCAACGAAATTACCAGAAGCTAGTTGGTTAGTTAAATGATgtctttttat ttcaagaatATTGCATCATTAGAATATTATGCATTGTCTGAATAGAAGGG TTGTGTTAATATGTCAAAATGACTAGTTATTAACTGTAACTGCAGGTAGT ATAAAAAACTGAGATCCATACTTTCTTGACCATTCCTATTCAGCTTAACT ATTCTACTTTAATTTTAGTTTTGTGAAATGGTTGCAGAACAAAGAACATC TTCTTCNTATTCTACTTTAATTTTAGTTTTGTGAAATGGTTGCAGAACAA AGATCATCTTCTTAATTATCTCTCTAAACACAAACCAAAAAGAGTGCTTC AAGTCATTCAGTTACTTACCAATTGTGTTGGTATAAAGGAGATAACAAAA TTACTCTGTGCAAATTCAGGTTATTATAACaccgtttttttattttacta atTTCAAAGACAATAATCGGATTAGCTCTACCAAGTTTAGTAATTCGGCT CATCCTAGACTGGTCACCTTCAGTTCACAAGACTTGCTACCTGGCGTAAG TTTTATTAATCATATAAAGTATGAATTGACAACTGGTATTCCTAGCCGTC TTACTTTGAGTACCTAGCGTCGACACTTTAGAAATCCAAGTGAAGAAGTG GTTTTCTATCTTTAAAAgatacacaggaaaaaatccgtgaatcacatgcg tgtgaaaaccaatttccgagcatgtgatcctgcaaaaaatcacatgcgtg tgaaaatgtaATNATTTTAGACACTCCATTTAAGTTGAGAAAAGATGGCT TGTGAATTgcattttcacacgcatgtgattttttgcaggatcacatGCTC GGAAATCAGTTTTCCCAAGCATgtgatttgcataatttttcCTGTGATAG ATATATTTGACGTCTTGCTTGAGTAGGTAGTGAAAGGTACAGTTTTTAAG GTTTGTTAGACGATAACATTCggtaacattttctaaaaatagcaaatgtT GTACAAAATGTTACCGTGTAACATCGATTAATATTCAGAAACATCCAAAT GTTAACGAATGTAACGCGCAGATAGCAAATCAAAAAAACATGATTTGCTA CTCATGATTAACATTTTGAATCAAAGGATGCCACcatttaaagggaattt aaaaggATATTTCATGTGCGCACGTGTTTTTTCGccgatttttctctctt ttttaataaaaaaaatcaaatgttacGCACAAAATGTTTGCGTGTAACAT ATGTTAACATTTCTTGAGCACATTTttaaaatcttctattttaagAAATG TTAGcaaatgttacacaaaaatgttaCCGTCTAACACGACCTCAAACGAA TTAATCGTTCCCGTTGCCACATAATTCTATAAAAAGACTAAATAAATCAG TCAAATTCTAATTGcgactttttttcatttcagaacGATGTCCACTTCTG ACAGTGTATAACACTTTCCTGTTGGCCCCTGAGGGTACCGGACCTCAAGA TCTCTTCGACATATTTCGTTCAGTAAGTTCCACGTTATTCCATGCTGTTT GTTCTCTTCAAAGTATCGATATCAATGTTATGAAAATTGCGTGTCGTAAA ATGAAATTTGTGTTAGCTATGCTCAGAGAGTATAGTTTCTTATCTATTGG AAAATGTGGATACAAAGTTCATAGGGTGGTGGCCGACCTTTACATTACTT TTATAGGATAAAATGTTATCAAATGAAAAGCAATGcgttatttttttaac attttcaggTAGTACGTTTATTCTCTTCCCTGATAGCACAACCTGAATTG AATGCTTACCAAGTACTGTTGTCTTCCAAATGTCAATGCTCGAATGATGT AAGTGGGATCGACAATTTTCCCTCCCTCCTCCGATGTTAGCTAGTTTATA ATACCTGTGATTTCTATGCACTAGTTTGCTGAATCAGACTAGTCTTGGAA TTTATCACATCATTAATTTTAAACCAACTTTTATCATTGTAGCAGCTCtc gattttgaatattttttgagttcatcacaaaattttaatttgcttTTTTC ATTTAGCATCTTAGCTAGTATTTGACCTTAAACCATTTTACATTGCCATT GACTGTTTTTCAGATCATCGAATGTTTCATTACATATCTTTACGACGAAT TCAAGGATATCAGTAAAAGTATATTCAACCCTCTCTCAACGGAAGTCAAG ACTAACAAACATTACAGGTAGACATATGACTtatttcaaatgataaaatt taaggcTATAGCCTGttgtatttcaaaaattgaaaatataaactgTTAGT GCATGCAAGCGAGCCTTAGTTGGGTTTCCATTGTGTCCTTCCATAACGAG TAAGATCTCCTTTTCAATTTTAACGAAAGTGACCTTTAGACCAAGAGATG CTAATAGAATCCAATACTTTCCATCGATAGCCTAATAATGTAGGACTTGT AGGTAGTTTTTCGATtattttcacggggtccacgacAAGCCGGCTGGGCT ATATATGAACTGAGCGAGATATTTTAAGCGCGGGGACTCGAACCTCAAAC TCCTGGTTTGAAACGCTGACGACTTGATTGGACTTTCAATCTCTCCTAAT GTTTTTGATACATAGGGAGCGGCTATCAGCGTTCCGTGATGGTATGTCAT TATTTTGCAAATTATGTGTAAACGATAAAATGTTGAGTGAAAAGCGAGCA GCAGTCGAGTGGAGTTATTTCAATCTGTTGGCTGGTACCCGACGGATGTA CCGAAAGATCCCAGAAGTCAGTGAAAGTGAGGGTAAGTGAAATCTTAAAA AccattgtttcattttcaatgggCTTTTCTAGTAAGAAGAATGTGTGGGT GTGTTGACGCTATCTGGAATTATGGGCtatatttggattttttaaacTGA TAAATTAAGAATTTAACTTTTACTATTCCCTGCGTACTAAGGTTTGTTTC ATCTTCAAGAatggttaaaataaatttttgaaaatgttcaatGTTTCGTC ATTTTTAACTTTAATTCGCTATTTAACCCTCTGGATGCCCATGAAAAATG AACTTGGATACCTGGATATCAAGCCCTTTTGATGTCCGTTATACTCAACA CCTCATACAATTTCTTTATGGAGAAGCCCCATTATGTCATGTCTGTAGAG GCATGTTGAATGGAGACACCAAAAGGTTTCCTTGTTCATGCACTGGAGCA TAGCAGAAAATCGACAATTTGTTTTCCCACCCCTTCATGGACAGTTCTTC AAAGAATGGACACTCATTGCATTTTGCAATTCTCAATGTACATATCCACT GGACCGNAGAATGGACACTCATTGCATATTTTAATTCTCAATGTACATAC CCACTGGAACAAATTCATGGACCAACAACGTTTTTGACttgttttatttg tttgttttgccATAGTACACCCAATAGAAGATTTACTGGAGCAGtattat gattttgatgaagatatGGAGGACGTTGCTATGCAACaatcacaacaaca acaacaacagaccACTCATGAGCAATGATCCTATAGTTTTCTCCCCTAGG AAGGGGCTGTGTTTGACatagtatttattttttgttgcttCCTTATAATA ATGGCGTTAGTTATAGCGCTCACGGACGATATTATTATGTTattgtttaa ttttacttttaaaatctttatttttcaaattggttGAGTTTGTTATGATa aatataattaaaataaaaatgaaagatacTAGAACACCGGCTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030473XLOC_030473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047886-exon-scaffold_139-1491911889:487863..488676TCONS_00047886-exon-scaffold_139-1491911889:487863..488676Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:487863..488676TCONS_00047886-exon-scaffold_139-1510915933:487863..488676Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:487863..488676TCONS_00047886-exon-scaffold_139-1575043694:487863..488676Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:493857..493907TCONS_00047886-exon-scaffold_139-1491911889:493857..493907Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:493857..493907TCONS_00047886-exon-scaffold_139-1510915933:493857..493907Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:493857..493907TCONS_00047886-exon-scaffold_139-1575043694:493857..493907Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:494111..494201TCONS_00047886-exon-scaffold_139-1491911889:494111..494201Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:494111..494201TCONS_00047886-exon-scaffold_139-1510915933:494111..494201Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:494111..494201TCONS_00047886-exon-scaffold_139-1575043694:494111..494201Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:494415..494486TCONS_00047886-exon-scaffold_139-1491911889:494415..494486Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:494415..494486TCONS_00047886-exon-scaffold_139-1510915933:494415..494486Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:494415..494486TCONS_00047886-exon-scaffold_139-1575043694:494415..494486Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:494617..497034TCONS_00047886-exon-scaffold_139-1491911889:494617..497034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:494617..497034TCONS_00047886-exon-scaffold_139-1510915933:494617..497034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:494617..497034TCONS_00047886-exon-scaffold_139-1575043694:494617..497034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:497753..497821TCONS_00047886-exon-scaffold_139-1491911889:497753..497821Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:497753..497821TCONS_00047886-exon-scaffold_139-1510915933:497753..497821Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:497753..497821TCONS_00047886-exon-scaffold_139-1575043694:497753..497821Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:497971..498123TCONS_00047886-exon-scaffold_139-1491911889:497971..498123Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:497971..498123TCONS_00047886-exon-scaffold_139-1510915933:497971..498123Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:497971..498123TCONS_00047886-exon-scaffold_139-1575043694:497971..498123Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:498453..498538TCONS_00047886-exon-scaffold_139-1491911889:498453..498538Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:498453..498538TCONS_00047886-exon-scaffold_139-1510915933:498453..498538Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:498453..498538TCONS_00047886-exon-scaffold_139-1575043694:498453..498538Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:498789..498931TCONS_00047886-exon-scaffold_139-1491911889:498789..498931Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:498789..498931TCONS_00047886-exon-scaffold_139-1510915933:498789..498931Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:498789..498931TCONS_00047886-exon-scaffold_139-1575043694:498789..498931Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:499946..500034TCONS_00047886-exon-scaffold_139-1491911889:499946..500034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:499946..500034TCONS_00047886-exon-scaffold_139-1510915933:499946..500034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:499946..500034TCONS_00047886-exon-scaffold_139-1575043694:499946..500034Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:500271..500360TCONS_00047886-exon-scaffold_139-1491911889:500271..500360Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:500271..500360TCONS_00047886-exon-scaffold_139-1510915933:500271..500360Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:500271..500360TCONS_00047886-exon-scaffold_139-1575043694:500271..500360Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:500626..500729TCONS_00047886-exon-scaffold_139-1491911889:500626..500729Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:500626..500729TCONS_00047886-exon-scaffold_139-1510915933:500626..500729Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:500626..500729TCONS_00047886-exon-scaffold_139-1575043694:500626..500729Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:501128..501294TCONS_00047886-exon-scaffold_139-1491911889:501128..501294Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:501128..501294TCONS_00047886-exon-scaffold_139-1510915933:501128..501294Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:501128..501294TCONS_00047886-exon-scaffold_139-1575043694:501128..501294Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1491911889:501928..502257TCONS_00047886-exon-scaffold_139-1491911889:501928..502257Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1510915933:501928..502257TCONS_00047886-exon-scaffold_139-1510915933:501928..502257Clytia hemisphaericaexon
TCONS_00047886-exon-scaffold_139-1575043694:501928..502257TCONS_00047886-exon-scaffold_139-1575043694:501928..502257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:487863..502257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 2.9818e-09 0 5.36805e-10 2.13151e-06 7.60047e-09 0 0 0 0 0 0 1.70203e-10 0 0 0 0 0 0 0 2.79665e-10 0 0 0 2.38629 0.657465 1.11122e-07 1.65248e-08 0 3.77013e-10
Blast
BLAST of TCONS_00047886 vs. Swiss-Prot (Human)
Match: LSM7 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.099e-42
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 2
Query:  860 MAEERKTKKTSILDLSKYMDKAIRVKFSGGREVAGVLKGFDHLLNIVLDNCTEFMRDSEDPYKITDETRDLGIVVCRGTAVVMICPVDGMEAIANPFVQQ 1159
            MA++ K KK SILDLSKY+DK IRVKF GGRE +G+LKGFD LLN+VLD   E+MRD +D YK+T++TR LG+VVCRGT+VV+ICP DGMEAI NPF+QQ
Sbjct:    1 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQ 100          
The following BLAST results are available for this feature:
BLAST of TCONS_00047886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM71.099e-4270.00U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
back to top