TCONS_00047971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047971
Unique NameTCONS_00047971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047971 ID=TCONS_00047971|Name=TCONS_00047971|organism=Clytia hemisphaerica|type=transcript|length=801bp
CCCCCGAGTTCCAAACAATAaaaccaaacaacaaagatgagatactcccg
accgttgATGATACTCCCGTCAATGAACGGAAAAAAATCTGCGTCAGATA
CTGtaaacatcttgaaaattagtaaatctAAGACCCTGCCAGACtttcag
atatcttcagagcctaaaaaagggaccctgaccaacGGCACGTCCCGTAC
TCAATTTTTCCTAAGTTCCCCCCTGGGGGGTAACCGACTAGTAAAAAATG
GAGTTGAAACATTATAATTTAGCCTTCAAAATTAAAACAGGATAAACAAC
AGTTTGAGGCTTAAAGTGCCAAGACATAAAGAAAGAGCCCGAACCAAAAC
TtactgtttcttataaaaaacagtgTATATGATTTTAGGTTTTGTAAGAA
TATGTAAATACAATTTTGCAGTAGGGCACAAAATCTGCCGAAGATTATTT
AGGccaatgtcatgttgaataattaaaaactctgacatcaaaacaatgat
aagaaaacGTGCccagcaaaaggtctattttagCCTGTTTACACTGAACT
AAAAATCCCATACATATGATATTTGGAGTATTTTTTGGTGGCCGATCTTA
AGGTCTTACTGGACACGTCTAGACTCTTATAGCAATGCAGTCAAGAAATC
TTACCGTCTCAAAGTGTtagcatagaggtataaagaaagacaggagatga
atttgtcggtaattggtcgttaaagtcttttgatttcttttatgtaataa
atcaaaagaaattctaggctcgcccgacgaaatacgactttttagtagaa
c
Run BLAST on NCBI

transcript from alignment at scaffold_139:639158..639958

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047971 ID=TCONS_00047971|Name=TCONS_00047971|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at scaffold_139:639158..639958 (Clytia hemisphaerica)
gttctactaaaaagtcgtatttcgtcgggcgagcctagaatttcttttga
tttattacataaaagaaatcaaaagactttaacgaccaattaccgacaaa
ttcatctcctgtctttctttatacctctatgctaACACTTTGAGACGGTA
AGATTTCTTGACTGCATTGCTATAAGAGTCTAGACGTGTCCAGTAAGACC
TTAAGATCGGCCACCAAAAAATACTCCAAATATCATATGTATGGGATTTT
TAGTTCAGTGTAAACAGGctaaaatagaccttttgctggGCACgttttct
tatcattgttttgatgtcagagtttttaattattcaacatgacattggCC
TAAATAATCTTCGGCAGATTTTGTGCCCTACTGCAAAATTGTATTTACAT
ATTCTTACAAAACCTAAAATCATATAcactgttttttataagaaacagta
AGTTTTGGTTCGGGCTCTTTCTTTATGTCTTGGCACTTTAAGCCTCAAAC
TGTTGTTTATCCTGTTTTAATTTTGAAGGCTAAATTATAATGTTTCAACT
CCATTTTTTACTAGTCGGTTACCCCCCAGGGGGGAACTTAGGAAAAATTG
AGTACGGGACGTGCCgttggtcagggtcccttttttaggctctgaagata
tctgaaaGTCTGGCAGGGTCTTagatttactaattttcaagatgtttaCA
GTATCTGACGCAGATTTTTTTCCGTTCATTGACGGGAGTATCATcaacgg
tcgggagtatctcatctttgttgtttggtttTATTGTTTGGAACTCGGGG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030532XLOC_030532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047971-exon-scaffold_139-1491911889:639158..639958TCONS_00047971-exon-scaffold_139-1491911889:639158..639958Clytia hemisphaericaexon
TCONS_00047971-exon-scaffold_139-1510915933:639158..639958TCONS_00047971-exon-scaffold_139-1510915933:639158..639958Clytia hemisphaericaexon
TCONS_00047971-exon-scaffold_139-1575043694:639158..639958TCONS_00047971-exon-scaffold_139-1575043694:639158..639958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:639158..639958 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.175172	0	0.296283	0.194291	0.396704	1.13086	0.279139	0.0692962	0.380619	0.0503587	2.16717	0.55639	0.762724	0.456718	0.182095	0.098829	0.266888	0.491607	0.370354	0.362167	0.0743058	0.431292	1.5701	1.81004	0.636002	0.124627	0.21522	0.150038
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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