TCONS_00048056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048056
Unique NameTCONS_00048056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048056 ID=TCONS_00048056|Name=TCONS_00048056|organism=Clytia hemisphaerica|type=transcript|length=341bp
CTAGTGAAGGATTACCAAACATGTATTTAAGTCGTTTGAGTGAAGCGATG
TAGCCATCGGTGTCACTTGCGAAGCCCTCTATTGCCTTCTTTGGTTCACC
CACGAGGTGTTGGTTTAAGTAGgttcttttttgaaagatgTCCGAGTACG
GTTGATTGTGGACCATATCGAAGAAATTTGAGATAAACAAGACCCATTTA
TCGGCGGCCCCATCAAAGGTTGGAAGTCTTTGGGGTNGGACCATATCGAA
GAAATTTGAGATAAACAAGACCCATTTATCGGCGGCCCCATCAAAGGTAG
GAAGTCTTTGGGGTGGCAGTCTTTGCTGAATGAGCATCTGC
Run BLAST on NCBI

protein sequence of TCONS_00048056-protein

>TCONS_00048056-protein ID=TCONS_00048056-protein|Name=TCONS_00048056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
QMLIQQRLPPQRLPTFDGAADKWVLFISNFFDMVXPQRLPTFDGAADKWV
LFISNFFDMVHNQPYSDIFQKRTYLNQHLVGEPKKAIEGFASDTDGYIAS
LKRLKYMFGNPSL
Run BLAST on NCBI

transcript from alignment at scaffold_14:40437..40777

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048056 ID=TCONS_00048056|Name=TCONS_00048056|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_14:40437..40777 (Clytia hemisphaerica)
GCAGATGCTCATTCAGCAAAGACTGCCACCCCAAAGACTTCCTACCTTTG
ATGGGGCCGCCGATAAATGGGTCTTGTTTATCTCAAATTTCTTCGATATG
GTCCNACCCCAAAGACTTCCAACCTTTGATGGGGCCGCCGATAAATGGGT
CTTGTTTATCTCAAATTTCTTCGATATGGTCCACAATCAACCGTACTCGG
AcatctttcaaaaaagaacCTACTTAAACCAACACCTCGTGGGTGAACCA
AAGAAGGCAATAGAGGGCTTCGCAAGTGACACCGATGGCTACATCGCTTC
ACTCAAACGACTTAAATACATGTTTGGTAATCCTTCACTAG

Coding sequence (CDS) from alignment at scaffold_14:40437..40777

>TCONS_00048056 ID=TCONS_00048056|Name=TCONS_00048056|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_14:40437..40777 (Clytia hemisphaerica)
CAGATGCTCATTCAGCAAAGACTGCCACCCCAAAGACTTCCTACCTTTGA
TGGGGCCGCCGATAAATGGGTCTTGTTTATCTCAAATTTCTTCGATATGG
TCCNACCCCAAAGACTTCCAACCTTTGATGGGGCCGCCGATAAATGGGTC
TTGTTTATCTCAAATTTCTTCGATATGGTCCACAATCAACCGTACTCGGA
catctttcaaaaaagaacCTACTTAAACCAACACCTCGTGGGTGAACCAA
AGAAGGCAATAGAGGGCTTCGCAAGTGACACCGATGGCTACATCGCTTCA
CTCAAACGACTTAAATACATGTTTGGTAATCCTTCACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030579XLOC_030579Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048056-proteinTCONS_00048056-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048056-exon-scaffold_14-1491911889:40437..40777TCONS_00048056-exon-scaffold_14-1491911889:40437..40777Clytia hemisphaericaexon
TCONS_00048056-exon-scaffold_14-1510915933:40437..40777TCONS_00048056-exon-scaffold_14-1510915933:40437..40777Clytia hemisphaericaexon
TCONS_00048056-exon-scaffold_14-1575043694:40437..40777TCONS_00048056-exon-scaffold_14-1575043694:40437..40777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:40437..40777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.683991	0.262092	0	2.08407	0	0	0	0.323495	0	0.28054	0	0	0	0	0	0	0	0.206802	0.285708	0	0	0	0	0	0	0	0.368536	0	0	0.303934
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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