TCONS_00048062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048062
Unique NameTCONS_00048062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048062 ID=TCONS_00048062|Name=TCONS_00048062|organism=Clytia hemisphaerica|type=transcript|length=456bp
AGGTACTCACGATATTATAGTTATTCGTGTGATAGCTTCCCAGAGTACCA
TTGAAACGTTCGAACGAAAAGCACCAGAAGCTATAAACTGGACCAAAGTT
TTCAATACATTCCTTCAAGTGTAGATGAAGGTGCATGTTGGGGGTACAAT
GTTCTGCACCATACAGGTTGACAAAATCTTTCAGGAACAAAATAAGAAGA
TTATGGGCTTGTTTTACTTCGTCAAGAGTAACAGACTTTTTGCATAGTAG
TTTACAAGCCCTAACGTTTTTGTACatgttttggtatttttttctaccCA
GTAACCGTTTGCAGCAATAAAGTGCATAAACTAGAACAAATGCTTTACAC
TCTTCTGCCTTCAACCGCTTATAGTATTTAGAAATCTTCCTAGGTAGTTT
GGTTTGACCCTCTGGCACCTGAATGTGTTGTTGAAGGTTGTCGATTTTCT
TCAATT
Run BLAST on NCBI

protein sequence of TCONS_00048062-protein

>TCONS_00048062-protein ID=TCONS_00048062-protein|Name=TCONS_00048062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LKKIDNLQQHIQVPEGQTKLPRKISKYYKRLKAEECKAFVLVYALYCCKR
LLGRKKYQNMYKNVRACKLLCKKSVTLDEVKQAHNLLILFLKDFVNLYGA
EHCTPNMHLHLHLKECIENFGPVYSFWCFSFERFNGTLGSYHTNNYNIVS
T
Run BLAST on NCBI

transcript from alignment at scaffold_14:60419..60874

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048062 ID=TCONS_00048062|Name=TCONS_00048062|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_14:60419..60874 (Clytia hemisphaerica)
AATTGAAGAAAATCGACAACCTTCAACAACACATTCAGGTGCCAGAGGGT
CAAACCAAACTACCTAGGAAGATTTCTAAATACTATAAGCGGTTGAAGGC
AGAAGAGTGTAAAGCATTTGTTCTAGTTTATGCACTTTATTGCTGCAAAC
GGTTACTGggtagaaaaaaataccaaaacatGTACAAAAACGTTAGGGCT
TGTAAACTACTATGCAAAAAGTCTGTTACTCTTGACGAAGTAAAACAAGC
CCATAATCTTCTTATTTTGTTCCTGAAAGATTTTGTCAACCTGTATGGTG
CAGAACATTGTACCCCCAACATGCACCTTCATCTACACTTGAAGGAATGT
ATTGAAAACTTTGGTCCAGTTTATAGCTTCTGGTGCTTTTCGTTCGAACG
TTTCAATGGTACTCTGGGAAGCTATCACACGAATAACTATAATATCGTGA
GTACCT

Coding sequence (CDS) from alignment at scaffold_14:60419..60874

>TCONS_00048062 ID=TCONS_00048062|Name=TCONS_00048062|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_14:60419..60874 (Clytia hemisphaerica)
TTGAAGAAAATCGACAACCTTCAACAACACATTCAGGTGCCAGAGGGTCA
AACCAAACTACCTAGGAAGATTTCTAAATACTATAAGCGGTTGAAGGCAG
AAGAGTGTAAAGCATTTGTTCTAGTTTATGCACTTTATTGCTGCAAACGG
TTACTGggtagaaaaaaataccaaaacatGTACAAAAACGTTAGGGCTTG
TAAACTACTATGCAAAAAGTCTGTTACTCTTGACGAAGTAAAACAAGCCC
ATAATCTTCTTATTTTGTTCCTGAAAGATTTTGTCAACCTGTATGGTGCA
GAACATTGTACCCCCAACATGCACCTTCATCTACACTTGAAGGAATGTAT
TGAAAACTTTGGTCCAGTTTATAGCTTCTGGTGCTTTTCGTTCGAACGTT
TCAATGGTACTCTGGGAAGCTATCACACGAATAACTATAATATCGTGAGT
ACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030585XLOC_030585Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048062-proteinTCONS_00048062-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048062-exon-scaffold_14-1491911889:60419..60874TCONS_00048062-exon-scaffold_14-1491911889:60419..60874Clytia hemisphaericaexon
TCONS_00048062-exon-scaffold_14-1510915933:60419..60874TCONS_00048062-exon-scaffold_14-1510915933:60419..60874Clytia hemisphaericaexon
TCONS_00048062-exon-scaffold_14-1575043694:60419..60874TCONS_00048062-exon-scaffold_14-1575043694:60419..60874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:60419..60874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.121038	0.149925	0	0	0.764215	0	0.652484	0.350107	0.107826	1.10518	1.52687	0.159776	0.555496	1.01607	0	0.149726	0	0	0.196952	0.630576	0.159423	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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