TCONS_00048026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048026
Unique NameTCONS_00048026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048026 ID=TCONS_00048026|Name=TCONS_00048026|organism=Clytia hemisphaerica|type=transcript|length=250bp
CCAGATGGTATGCCGAAAATGCAAGTATCTCTGGTCTTTgagaaacaata
tttgtatGCTGGTTATGTAATGGGAATTAGTTTCCTACAACTTGGCCCAT
CTCCGACTATTATGAACAGAGAATGTTTTAAATGCTTATGTGATGAGCCA
ATCGATCCAACTCATGATTTTTTGGATTTGCCTTCTGTGAAACCAATCGC
CGATGCTGGGAGTGAAGAAGAGTTGGCACTCGCATTTCAGAATGACGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_14:88533..89125-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048026 ID=TCONS_00048026|Name=TCONS_00048026|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at scaffold_14:88533..89125- (Clytia hemisphaerica)
CCAGATGGTATGCCGAAAATGCAAGTATCTCTGGTCTTTGAGAAACAATA
TTTGTATGCTGGTTATGTAATGGGAATTAGTTTCCTACAACTTGGCCCAT
CTCCGACTATTATGAACAGAGAATGTTTTAAATGCTTATGTGATGAGCCA
ATCGATCCAACTCATGATTTTTTGGATTTGCCTTCTGTGAAACCAGTAAG
TTTCTAAAAATTGAAAATGAAAGTAACCCAATATATCTGATAGGCTGCAA
TTACATTAAACACTTTAAATGTCGCGTGGTCGTCAATTCCGTGCAACGTA
TGTAGACCAATGCAACAGAGTAAATTTTCGTTTATGACCCAGTTTTTTAG
TCTCTTTTTTATCCTGGCACATGCAGGGTAAAAATATGCATTGTGGAGAA
AAAAATGGAAACAGGACCAAAAGTGTTGCTTTCTACTCTAATTTTTATGA
ATCTTTTCGGCTCAATAATACTGCAGTCTGCAAATCCTTGGGATATGGAT
ATCAGTATATCAGAATAATCATTTAGTAACCTATTTAGATCGCCGATGCT
GGGAGTGAAGAAGAGTTGGCACTCGCATTTCAGAATGACGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030558XLOC_030558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048026-exon-scaffold_14-1575043694:88931..89125TCONS_00048026-exon-scaffold_14-1575043694:88931..89125Clytia hemisphaericaexon
TCONS_00048026-exon-scaffold_14-1575043694:88533..88587TCONS_00048026-exon-scaffold_14-1575043694:88533..88587Clytia hemisphaericaexon
TCONS_00048026-exon-scaffold_14-1510915933:88931..89125TCONS_00048026-exon-scaffold_14-1510915933:88931..89125Clytia hemisphaericaexon
TCONS_00048026-exon-scaffold_14-1510915933:88533..88587TCONS_00048026-exon-scaffold_14-1510915933:88533..88587Clytia hemisphaericaexon
TCONS_00048026-exon-scaffold_14-1491911889:88931..89125TCONS_00048026-exon-scaffold_14-1491911889:88931..89125Clytia hemisphaericaexon
TCONS_00048026-exon-scaffold_14-1491911889:88533..88587TCONS_00048026-exon-scaffold_14-1491911889:88533..88587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:88533..89125 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.667978	0	0	0	0	0	0	0	0	1.56652	0	1.37867	0.532009	0	0	0	1.21409	0	0	0	0	0.012999	0	0	0	0.535281	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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