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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048028 ID=TCONS_00048028|Name=TCONS_00048028|organism=Clytia hemisphaerica|type=transcript|length=1095bp
AGTTTAAGACATGGAAAAAAGATCATGACATTGAAAGTTTCACTAATATT
ACTGATGACGAGTTGGACAATATAATTTCTGAAATACTAGAGGCATCCCC
TAATTCTGGTGAAAGGATGGTAGTTGGATCACTTCAAGCAAGGGGTCAAA
TTATTGAGAGGGCAAAGGTTCGCGAATCTTTAACGCGTGTGAACCCAGAA
AGAAATTCACTtaacaaaagaataaaaagaagagttTACAGTGTTCCATT
CCCAAATGCATTATAGCACCTTGATGGGAACCATAAACTTATTAGGTGGC
GTTTTGTGATTCATGGGTGCATAGATGGGTTTTCGCGCACCATAGTTTTC
CTGAAATGTTCAACTAATAACAAATCAATTACTGTCTTAGAAAACTTTTT
GGAATCCATCCTTGAATTTCGCTGCCCTTTGCGTATTAGAACTGATCATG
GTTTAGAGAATATTAAAGTCGCTGAATGGATGCTAGACCACCATGGATTG
GAAAATAATCCCGTATTAACTGGAAGATCTGTCCATAACCAAAGGATCGA
ACGACTTTGGTTGGATGTGAAGTTAAAAGTTAATTGTATATTTATTGATT
TATTTCGTAACTTTGAAGAAGATGGTTTATTAGACCCAGCCAATGAGGTT
CACTTGTTTGCCCTTCAATACATTTTTTGTCCTCGCATCAACAAAAAGCT
ACAAGAGTTCATGTCAAGTTGGAACAATCATCCTATCCGAACTGAAAAAA
CTCAACACCGTTACAGCTCTGGATTGAAGGAATCTATAAAAGCTTTGAGG
ATGGCATTCTTGAACGAACAAATGTTGATGTAGATGAGGACTATGGTGTA
GATGGTGATGAATCAGATAATGATGATGAAGATGAAGAACAATACACAGT
TGAAGTGCCACAAATTCTTCTTGGTTTGGATGAGAATCAACAAAATTTTG
TTACCTCTATAGATCCACTTCAAGATGATGGCGAAGAGGGAAGATCCTTA
TTTCAAAGATTAGTAAACTTTCTTGAATCGTAGATCAACGTAGGAACAAG
AATTAAAATTGTGACATTTGTTTACCTTAAAGGAAGAAATTTTGG Run BLAST on NCBI protein sequence of TCONS_00048028-protein >TCONS_00048028-protein ID=TCONS_00048028-protein|Name=TCONS_00048028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MLDHHGLENNPVLTGRSVHNQRIERLWLDVKLKVNCIFIDLFRNFEEDGL
LDPANEVHLFALQYIFCPRINKKLQEFMSSWNNHPIRTEKTQHRYSSGLK
ESIKALRMAFLNEQMLM Run BLAST on NCBI transcript from alignment at scaffold_14:91460..92777- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048028 ID=TCONS_00048028|Name=TCONS_00048028|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at scaffold_14:91460..92777- (Clytia hemisphaerica)
AGTTTAAGACATGGAAAAAAGATCATGACATTGAAAGTTTCACTAATATT
ACTGATGACGAGTTGGACAATATAATTTCTGAAATACTAGAGGCATCCCC
TAATTCTGGTGAAAGGATGGTAGTTGGATCACTTCAAGCAAGGGGTCAAA
TTATTGAGAGGGCAAAGGTTCGCGAATCTTTAACGCGTGTGAACCCAGAA
AGAAATTCACTTAACAAAAGAATAAAAAGAAGAGTTTACAGTGTTCCATT
CCCAAATGCATTATAGTAAATTCTATTTATCAAGACTTTGGTTCCTTTCC
AGCATTTTTCTTTCAAGTATTCACTCTGTTCCTTGACCTTTTCAAAGCCC
ATTCTTGTTATATGGAATACCTGCCTATTTGAACATCCATCGTGTACTTC
TTTTAGTCTCTGCTTAAGTTTAAGATATTTGGTCATTAAAAGTCAACTGT
ATAATTTGATCTTAAAACTTCTCTTTTATCTCCTCCAGGCACCTTGATGG
GAACCATAAACTTATTAGGTGGCGTTTTGTGATTCATGGGTGCATAGATG
GGTTTTCGCGCACCATAGTTTTCCTGAAATGTTCAACTAATAACAAATCA
ATTACTGTCTTAGAAAACTTTTTGGAATCCATCCTTGAATTTCGCTGCCC
TTTGCGTATTAGAACTGATCATGGTTTAGAGAATATTAAAGTCGCTGAAT
GGATGCTAGACCACCATGGATTGGAAAATAATCCCGTATTAACTGGAAGA
TCTGTCCATAACCAAAGGATCGAACGACTTTGGTTGGATGTGAAGTTAAA
AGTTAATTGTATATTTATTGATTTATTTCGTAACTTTGAAGAAGATGGTT
TATTAGACCCAGCCAATGAGGTTCACTTGTTTGCCCTTCAATACATTTTT
TGTCCTCGCATCAACAAAAAGCTACAAGAGTTCATGTCAAGTTGGAACAA
TCATCCTATCCGAACTGAAAAAACTCAACACCGTTACAGCTCTGGATTGA
AGGAATCTATAAAAGCTTTGAGGATGGCATTCTTGAACGAACAAATGTTG
ATGTAGATGAGGACTATGGTGTAGATGGTGATGAATCAGATAATGATGAT
GAAGATGAAGAACAATACACAGTTGAAGTGCCACAAATTCTTCTTGGTTT
GGATGAGAATCAACAAAATTTTGTTACCTCTATAGATCCACTTCAAGATG
ATGGCGAAGAGGGAAGATCCTTATTTCAAAGATTAGTAAACTTTCTTGAA
TCGTAGATCAACGTAGGAACAAGAATTAAAATTGTGACATTTGTTTACCT
TAAAGGAAGAAATTTTGG Coding sequence (CDS) from alignment at scaffold_14:91460..92777- >TCONS_00048028 ID=TCONS_00048028|Name=TCONS_00048028|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_14:91460..92777- (Clytia hemisphaerica)
ATGCTAGACCACCATGGATTGGAAAATAATCCCGTATTAACTGGAAGATC
TGTCCATAACCAAAGGATCGAACGACTTTGGTTGGATGTGAAGTTAAAAG
TTAATTGTATATTTATTGATTTATTTCGTAACTTTGAAGAAGATGGTTTA
TTAGACCCAGCCAATGAGGTTCACTTGTTTGCCCTTCAATACATTTTTTG
TCCTCGCATCAACAAAAAGCTACAAGAGTTCATGTCAAGTTGGAACAATC
ATCCTATCCGAACTGAAAAAACTCAACACCGTTACAGCTCTGGATTGAAG
GAATCTATAAAAGCTTTGAGGATGGCATTCTTGAACGAACAAATGTTGAT
GTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048028-exon-scaffold_14-1575043694:92513..92777 | TCONS_00048028-exon-scaffold_14-1575043694:92513..92777 | Clytia hemisphaerica | exon |
| TCONS_00048028-exon-scaffold_14-1575043694:91460..92289 | TCONS_00048028-exon-scaffold_14-1575043694:91460..92289 | Clytia hemisphaerica | exon |
| TCONS_00048028-exon-scaffold_14-1510915933:92513..92777 | TCONS_00048028-exon-scaffold_14-1510915933:92513..92777 | Clytia hemisphaerica | exon |
| TCONS_00048028-exon-scaffold_14-1510915933:91460..92289 | TCONS_00048028-exon-scaffold_14-1510915933:91460..92289 | Clytia hemisphaerica | exon |
| TCONS_00048028-exon-scaffold_14-1491911889:92513..92777 | TCONS_00048028-exon-scaffold_14-1491911889:92513..92777 | Clytia hemisphaerica | exon |
| TCONS_00048028-exon-scaffold_14-1491911889:91460..92289 | TCONS_00048028-exon-scaffold_14-1491911889:91460..92289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:91460..92777 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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