TCONS_00048066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048066
Unique NameTCONS_00048066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048066 ID=TCONS_00048066|Name=TCONS_00048066|organism=Clytia hemisphaerica|type=transcript|length=162bp
CTCGCGCTGTGCAATATGTTTCGTCgctgcgccgaagtcgcgaaggctgt
tccagacataaaataacttataccatATGCGAAGTCACGAAAGCTGTtcc
agacataaaataacttataccatATGCGAAAGACTCGCGCTGCGCAACAT
CCTTCGCCGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_14:136757..136918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048066 ID=TCONS_00048066|Name=TCONS_00048066|organism=Clytia hemisphaerica|type=transcript|length=162bp|location=Sequence derived from alignment at scaffold_14:136757..136918 (Clytia hemisphaerica)
CAGCGGCGAAGGATGTTGCGCAGCGCGAGTCTTTCGCATatggtataagt
tattttatgtctggaACAGCTTTCGTGACTTCGCATatggtataagttat
tttatgtctggaacagccttcgcgacttcggcgcagcGACGAAACATATT
GCACAGCGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030589XLOC_030589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048066-exon-scaffold_14-1491911889:136757..136918TCONS_00048066-exon-scaffold_14-1491911889:136757..136918Clytia hemisphaericaexon
TCONS_00048066-exon-scaffold_14-1510915933:136757..136918TCONS_00048066-exon-scaffold_14-1510915933:136757..136918Clytia hemisphaericaexon
TCONS_00048066-exon-scaffold_14-1575043694:136757..136918TCONS_00048066-exon-scaffold_14-1575043694:136757..136918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:136757..136918 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top