TCONS_00048069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048069
Unique NameTCONS_00048069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048069 ID=TCONS_00048069|Name=TCONS_00048069|organism=Clytia hemisphaerica|type=transcript|length=293bp
TTAAATTACCATTCAATCATTTCTTAGTCCTTTTTTAAAAGACAACTACA
CAACATTTCGAtgcttttaactgaagttatgACTGCAAAGTTACATTAAT
TAAAAAGTTAAACTTAATGTAACTTTGATAGCTTTTGCTCTGAAATTCTT
GTGTTGCTTCTCAGGACCTCCCGACAAGGTCCCTACTAGCAGTGTTTTAA
GTACAATTATTATCTGGAGTCTGGTACTTGATAAATAATTGCTAGAAGGC
GTAGAAATAAAACTGATATTTTGCAGGTTAAGGGGATACAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_14:181761..182053

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048069 ID=TCONS_00048069|Name=TCONS_00048069|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_14:181761..182053 (Clytia hemisphaerica)
GGCTGTATCCCCTTAACCTGCAAAATATCAGTTTTATTTCTACGCCTTCT
AGCAATTATTTATCAAGTACCAGACTCCAGATAATAATTGTACTTAAAAC
ACTGCTAGTAGGGACCTTGTCGGGAGGTCCTGAGAAGCAACACAAGAATT
TCAGAGCAAAAGCTATCAAAGTTACATTAAGTTTAACTTTTTAATTAATG
TAACTTTGCAGTcataacttcagttaaaagcaTCGAAATGTTGTGTAGTT
GTCTTTTAAAAAAGGACTAAGAAATGATTGAATGGTAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030592XLOC_030592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048069-exon-scaffold_14-1491911889:181761..182053TCONS_00048069-exon-scaffold_14-1491911889:181761..182053Clytia hemisphaericaexon
TCONS_00048069-exon-scaffold_14-1510915933:181761..182053TCONS_00048069-exon-scaffold_14-1510915933:181761..182053Clytia hemisphaericaexon
TCONS_00048069-exon-scaffold_14-1575043694:181761..182053TCONS_00048069-exon-scaffold_14-1575043694:181761..182053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:181761..182053 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.39941	3.97518	4.48748	4.33116	7.09587	2.12914	1.31864	4.69298	2.80453	0.840189	2.03594	1.91293	3.07931	2.52897	1.62007	0.447643	0.936852	2.03574	2.38311	0.48283	0.438962	4.52121	2.82455	1.15483	0	0.467393	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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