TCONS_00048032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048032
Unique NameTCONS_00048032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048032 ID=TCONS_00048032|Name=TCONS_00048032|organism=Clytia hemisphaerica|type=transcript|length=365bp
TGTCAAAAAATTAAACGctgttataaaaaaacgtgtgttcAAGTTCTTTG
CAGTTCTTTgtcatgtacaattttttttatgattagaaaaattattttaa
gaatCTATGTATCAAAACTTTTATAAAATTGACAACAGATTAAAAATGAA
CCACTTTGATGAAGAAATTTGGCTTAGTAAACATCAAAGTCTGTCAAATC
ATGCCTGTCAATATGGATGCCTGTGCAAACAAATGTCACAGGTATTTTGG
CCAAGAAAAGTTGAGGAAAACTCGTCCAAGTAAAAGAAGGAATTACGAGA
TCCTTATTCACCAATTTTATGAAGCAATATTCACCACCATAAGATTCGAT
TCAGTCACATTGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_14:213748..214366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048032 ID=TCONS_00048032|Name=TCONS_00048032|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_14:213748..214366- (Clytia hemisphaerica)
TGTCAAAAAATTAAACGCTGTTATAAAAAAACGTGTGTTCAAGTTCTTTG
CAGTTCTTTGTCATGTACAATTTTTTTTATGATTAGAAAAATTATTTTAA
GAATCTATGTATCAAAACTTTTATAAAATTGACAACAGATTAAAAATGAA
CCACTTTGATGAAGAAATTTGGCTTAGTAAACATCAAAGTCTGTCAAATC
ATGCCTGTCAATATGGATGCCTGTGCAAACAAATGTCACAGGTAAGACAT
CTTTTCTTATTACTTCCATTGGCCTACGATATCAACAGGGTACCATTTCC
TGCAACACCATGAAGACTTATTCAGAACAATGTGGAATCTCTGGTTGGAT
CCTTATAAAAGGACTTTCTGTGATATATGTTCTTTTCTGCCAGGGTAGAC
ATGAAAAGGAGGACATGCCTTTAGCACAAATAAATCGAAGAGGCGTTTCA
ATGTGTGCTTTTATCGTTCAAACAATCATCCTTTATATTTTTAAGGTATT
TTGGCCAAGAAAAGTTGAGGAAAACTCGTCCAAGTAAAAGAAGGAATTAC
GAGATCCTTATTCACCAATTTTATGAAGCAATATTCACCACCATAAGATT
CGATTCAGTCACATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030562XLOC_030562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048032-exon-scaffold_14-1575043694:214126..214366TCONS_00048032-exon-scaffold_14-1575043694:214126..214366Clytia hemisphaericaexon
TCONS_00048032-exon-scaffold_14-1575043694:213748..213871TCONS_00048032-exon-scaffold_14-1575043694:213748..213871Clytia hemisphaericaexon
TCONS_00048032-exon-scaffold_14-1510915933:214126..214366TCONS_00048032-exon-scaffold_14-1510915933:214126..214366Clytia hemisphaericaexon
TCONS_00048032-exon-scaffold_14-1510915933:213748..213871TCONS_00048032-exon-scaffold_14-1510915933:213748..213871Clytia hemisphaericaexon
TCONS_00048032-exon-scaffold_14-1491911889:214126..214366TCONS_00048032-exon-scaffold_14-1491911889:214126..214366Clytia hemisphaericaexon
TCONS_00048032-exon-scaffold_14-1491911889:213748..213871TCONS_00048032-exon-scaffold_14-1491911889:213748..213871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:213748..214366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.373632	0.443543	0	0	5.21374	4.11997	2.33909	2.73728	1.32814	1.68901	0.824482	0.220667	0.539372	0.950255	0.774824	1.63176	2.56087	1.74987	0.967016	1.51787	1.53919	1.32287	1.2684	1.89653	0	1.36909	0.93552	0.332804	1.00968	0.712401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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