TCONS_00048078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048078
Unique NameTCONS_00048078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048078 ID=TCONS_00048078|Name=TCONS_00048078|organism=Clytia hemisphaerica|type=transcript|length=778bp
GAGTAATGAGAGAGTGTTTTTCTGAAACAAGAGTGTATTGGTGTGACTGC
TTGTGTACTATAATCTTGTGATATCTTGTTCGAGTTCAAATGGCGACGAA
GAAGAAAGATTCAGAATTAGTGACCGGGAATACTTTCATGAATAAACCTA
CGCGAGTATTCACAAAAGAAGAGAAATTTACCTGGGGTGTTGATACCTTC
TTTAAAGATCAAAAGACTTCGAAAGGAACCGAAATATGGCGAGAGAGTCC
TTTTCATTCTTACGAAGAATGGTATGCTGAAATCAGTTCTCTTTTGAGag
acaaaaagcaagaaaacaTTGTATTAAATGGAGAAACAAAATACGTTTTT
ATCAAGAAGAAGTTTAATGAATGCCATGACACCCTTGGCTTTGTAATCGA
GAAAGAAGTTAGCAAAGAGACTTTAAAGCTTTTTCccaacaaaacacaaa
aagaaaaagagcatgaaatttgggTGAAGGGTTTAATAGAAAGAGCTACA
CATGAcgcaaattttcttcttcttcatccgAACCAATCAGATGCTCACAT
GCAGCTTAGAGAATCGGCTAAACGTGATTTAAAATACGATTGGTTTTTTG
TTCCCGAAGTTACTGATGACTTTTATTTTGGCGATAAAAAAAGTGCTAtt
gttttggttattttaaacACGACTTGATAAATTGTAATCATGATTAATGG
TCAGAGAAAGGTCTCATTCCGAAGAGTTAAAAAATCAGACTTCTGCatta
acacgcatgcgtaatttgtcggtctttt
Run BLAST on NCBI

protein sequence of TCONS_00048078-protein

>TCONS_00048078-protein ID=TCONS_00048078-protein|Name=TCONS_00048078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MATKKKDSELVTGNTFMNKPTRVFTKEEKFTWGVDTFFKDQKTSKGTEIW
RESPFHSYEEWYAEISSLLRDKKQENIVLNGETKYVFIKKKFNECHDTLG
FVIEKEVSKETLKLFPNKTQKEKEHEIWVKGLIERATHDANFLLLHPNQS
DAHMQLRESAKRDLKYDWFFVPEVTDDFYFGDKKSAIVLVILNTT
Run BLAST on NCBI

transcript from alignment at scaffold_14:286624..287401

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048078 ID=TCONS_00048078|Name=TCONS_00048078|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at scaffold_14:286624..287401 (Clytia hemisphaerica)
aaaagaccgacaaattacgcatgcgtgttaatGCAGAAGTCTGATTTTTT
AACTCTTCGGAATGAGACCTTTCTCTGACCATTAATCATGATTACAATTT
ATCAAGTCGTgtttaaaataaccaaaacaaTAGCACTTTTTTTATCGCCA
AAATAAAAGTCATCAGTAACTTCGGGAACAAAAAACCAATCGTATTTTAA
ATCACGTTTAGCCGATTCTCTAAGCTGCATGTGAGCATCTGATTGGTTcg
gatgaagaagaagaaaatttgcgTCATGTGTAGCTCTTTCTATTAAACCC
TTCAcccaaatttcatgctctttttctttttgtgttttgttggGAAAAAG
CTTTAAAGTCTCTTTGCTAACTTCTTTCTCGATTACAAAGCCAAGGGTGT
CATGGCATTCATTAAACTTCTTCTTGATAAAAACGTATTTTGTTTCTCCA
TTTAATACAAtgttttcttgctttttgtctCTCAAAAGAGAACTGATTTC
AGCATACCATTCTTCGTAAGAATGAAAAGGACTCTCTCGCCATATTTCGG
TTCCTTTCGAAGTCTTTTGATCTTTAAAGAAGGTATCAACACCCCAGGTA
AATTTCTCTTCTTTTGTGAATACTCGCGTAGGTTTATTCATGAAAGTATT
CCCGGTCACTAATTCTGAATCTTTCTTCTTCGTCGCCATTTGAACTCGAA
CAAGATATCACAAGATTATAGTACACAAGCAGTCACACCAATACACTCTT
GTTTCAGAAAAACACTCTCTCATTACTC

Coding sequence (CDS) from alignment at scaffold_14:286624..287401

>TCONS_00048078 ID=TCONS_00048078|Name=TCONS_00048078|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_14:286624..287401 (Clytia hemisphaerica)
TCAAGTCGTgtttaaaataaccaaaacaaTAGCACTTTTTTTATCGCCAA
AATAAAAGTCATCAGTAACTTCGGGAACAAAAAACCAATCGTATTTTAAA
TCACGTTTAGCCGATTCTCTAAGCTGCATGTGAGCATCTGATTGGTTcgg
atgaagaagaagaaaatttgcgTCATGTGTAGCTCTTTCTATTAAACCCT
TCAcccaaatttcatgctctttttctttttgtgttttgttggGAAAAAGC
TTTAAAGTCTCTTTGCTAACTTCTTTCTCGATTACAAAGCCAAGGGTGTC
ATGGCATTCATTAAACTTCTTCTTGATAAAAACGTATTTTGTTTCTCCAT
TTAATACAAtgttttcttgctttttgtctCTCAAAAGAGAACTGATTTCA
GCATACCATTCTTCGTAAGAATGAAAAGGACTCTCTCGCCATATTTCGGT
TCCTTTCGAAGTCTTTTGATCTTTAAAGAAGGTATCAACACCCCAGGTAA
ATTTCTCTTCTTTTGTGAATACTCGCGTAGGTTTATTCATGAAAGTATTC
CCGGTCACTAATTCTGAATCTTTCTTCTTCGTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030601XLOC_030601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048078-proteinTCONS_00048078-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048078-exon-scaffold_14-1491911889:286624..287401TCONS_00048078-exon-scaffold_14-1491911889:286624..287401Clytia hemisphaericaexon
TCONS_00048078-exon-scaffold_14-1510915933:286624..287401TCONS_00048078-exon-scaffold_14-1510915933:286624..287401Clytia hemisphaericaexon
TCONS_00048078-exon-scaffold_14-1575043694:286624..287401TCONS_00048078-exon-scaffold_14-1575043694:286624..287401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:286624..287401 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3864	21.5239	11.2955	7.04495	29.6816	24.7172	22.8462	22.1388	9.72027	11.0639	6.50651	4.69238	9.62051	7.70857	4.92129	4.97734	9.92302	11.9459	11.334	16.5072	7.35471	5.91034	28.5962	25.2181	3.94967	5.19786	11.2854	8.94184	12.5261	17.7682
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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