TCONS_00048079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048079
Unique NameTCONS_00048079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048079 ID=TCONS_00048079|Name=TCONS_00048079|organism=Clytia hemisphaerica|type=transcript|length=324bp
GTTGAAGCGGTGGCTTCTGGTTCTTTTGTAATGCGAGTAAAATCTTAGTT
GCTTGGTTCAACGCCTTATCATTTTTAAATCCAGGGATATCACCAGCTTC
CTTTGATTTTTCTGCTTCTTTCATTCCCGCAACTTCTGATGCCAACTGTT
GAATAGCTGCACCCATCTTGCCTAGCTCGGTACCTACTGGACCTGCTTTA
GCGCCTGGAGCAAGTGGCCCCAAAATACCGGCACCCCCACCGTCAACTTT
CTCGTTCACAGCATCTAGCTTGTCTGCTAAATCACCGACGGTTGCTTGCA
GTTTCGCCATTTCGGGAGAAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00048079-protein

>TCONS_00048079-protein ID=TCONS_00048079-protein|Name=TCONS_00048079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
PSPEMAKLQATVGDLADKLDAVNEKVDGGGAGILGPLAPGAKAGPVGTEL
GKMGAAIQQLASEVAGMKEAEKSKEAGDIPGFKNDKALNQATKILLALQK
NQKPPLQ
Run BLAST on NCBI

transcript from alignment at scaffold_14:332140..332463

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048079 ID=TCONS_00048079|Name=TCONS_00048079|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at scaffold_14:332140..332463 (Clytia hemisphaerica)
CTCCTTCTCCCGAAATGGCGAAACTGCAAGCAACCGTCGGTGATTTAGCA
GACAAGCTAGATGCTGTGAACGAGAAAGTTGACGGTGGGGGTGCCGGTAT
TTTGGGGCCACTTGCTCCAGGCGCTAAAGCAGGTCCAGTAGGTACCGAGC
TAGGCAAGATGGGTGCAGCTATTCAACAGTTGGCATCAGAAGTTGCGGGA
ATGAAAGAAGCAGAAAAATCAAAGGAAGCTGGTGATATCCCTGGATTTAA
AAATGATAAGGCGTTGAACCAAGCAACTAAGATTTTACTCGCATTACAAA
AGAACCAGAAGCCACCGCTTCAAC

Coding sequence (CDS) from alignment at scaffold_14:332140..332463

>TCONS_00048079 ID=TCONS_00048079|Name=TCONS_00048079|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_14:332140..332463 (Clytia hemisphaerica)
CCTTCTCCCGAAATGGCGAAACTGCAAGCAACCGTCGGTGATTTAGCAGA
CAAGCTAGATGCTGTGAACGAGAAAGTTGACGGTGGGGGTGCCGGTATTT
TGGGGCCACTTGCTCCAGGCGCTAAAGCAGGTCCAGTAGGTACCGAGCTA
GGCAAGATGGGTGCAGCTATTCAACAGTTGGCATCAGAAGTTGCGGGAAT
GAAAGAAGCAGAAAAATCAAAGGAAGCTGGTGATATCCCTGGATTTAAAA
ATGATAAGGCGTTGAACCAAGCAACTAAGATTTTACTCGCATTACAAAAG
AACCAGAAGCCACCGCTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030602XLOC_030602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048079-proteinTCONS_00048079-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048079-exon-scaffold_14-1491911889:332140..332463TCONS_00048079-exon-scaffold_14-1491911889:332140..332463Clytia hemisphaericaexon
TCONS_00048079-exon-scaffold_14-1510915933:332140..332463TCONS_00048079-exon-scaffold_14-1510915933:332140..332463Clytia hemisphaericaexon
TCONS_00048079-exon-scaffold_14-1575043694:332140..332463TCONS_00048079-exon-scaffold_14-1575043694:332140..332463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:332140..332463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.300817	0	0	0	0	0.7932	1.85646	0.5199	0.93755	0	1.18792	1.64128	0.852244	1.22616	2.06777	1.62102	0.474713	0	0	2.08779	1.30931	0	0.643124	0.993604	1.77354	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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