|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048081 ID=TCONS_00048081|Name=TCONS_00048081|organism=Clytia hemisphaerica|type=transcript|length=1163bp
ATGAAATTACCAGGATTTTTAGTATTCAAAGAATTGCCAATATCATCTGT
TCTTTGGACATTATTTCCAGTAGAATTGAACGAACTTGGAATCACATTAT
CGCTATGTTTTGGTTTTGTATCAGATTCAATAATTTTGAAGTTCACGTTC
CCTATTTGTTGACTTTGATTTGGATTTATGTCCTCGTTGTTTGATCCAAT
CGTTCTATTGGTGCTTTGCTTCTCTTTCACATTGGATGGTGGAGATAATC
TGTCTTCCGTTGAGACACCATGTGATTGTATTCCTTCTGTCTCATTTCCA
ATAGTTAAAGGAGATAATGAATCATCAGTTATAGATGGTGGAGATGATTG
CTTCTCACTTGAAATGCTTCCCGAATGACTTTCATCTTTGCTTTTCCCAA
AATATAAAGGAGATAGCTTGACCTTCGTATCTAAAGAGTTTTCAAACTGA
CTCTCAGCAGTTGAAACAGCTGTTGGATTCTGACCATGAATTGCAGTTAA
ACCAATATTCTGAGGAAGACTTTTAAGATTCCCAACTTCTTCTGAGTCAT
CCCCATGTTTTAGATTCGTCACTTCCTCTTTGTTACCAACGATTTTAGTA
TTATCTGGGGTTAATTCAACAATATTTTGGTTTTCTGGAGTCGATAAAGA
GGCTTTTGTATCTGATTGGCCATCATTTATTACAGTATTTTTCTTTTCGC
CTTTTTCTTCTTTAGTAGGATTATCACTTTCTTGTCGTAATCTAGATGTT
TCTTCACTCGTTTCTGTAATGGTTACACCCTTCTTCATTCCTTGTTGTTC
TTCTAACGCATGCGTAGTTTCACTCAATACTTCAGCATCGGAATCAACAT
TATTatcattttcaaacaaatcaaGCATTTGTATACCATGTTTCcggttt
tttaaactttcttcaTTCTTGGCACCATTTTGAGTGACGTCAACATTCGA
ATCTACAAACATTCGTGTCTTTCCATTGGCTGTTGTTGTAAGCTCAACAA
TTGGGCTACCATCTTTAATATCCTTCCCAGTCTCTTCGCTTAAGAGAACA
CCATCAGGGATTTCACttcgtttgtttttgtttttggacCTAAATACTGG
CCTTTTAACAAAACGCGACTCGTCCGTGCCAAATTTATGTAGCCCATTCC
AATTTTTGCTTGG Run BLAST on NCBI protein sequence of TCONS_00048081-protein >TCONS_00048081-protein ID=TCONS_00048081-protein|Name=TCONS_00048081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
PSKNWNGLHKFGTDESRFVKRPVFRSKNKNKRSEIPDGVLLSEETGKDIK
DGSPIVELTTTANGKTRMFVDSNVDVTQNGAKNEESLKNRKHGIQMLDLF
ENDNNVDSDAEVLSETTHALEEQQGMKKGVTITETSEETSRLRQESDNPT
KEEKGEKKNTVINDGQSDTKASLSTPENQNIVELTPDNTKIVGNKEEVTN
LKHGDDSEEVGNLKSLPQNIGLTAIHGQNPTAVSTAESQFENSLDTKVKL
SPLYFGKSKDESHSGSISSEKQSSPPSITDDSLSPLTIGNETEGIQSHGV
STEDRLSPPSNVKEKQSTNRTIGSNNEDINPNQSQQIGNVNFKIIESDTK
PKHSDNVIPSSFNSTGNNVQRTDDIGNSLNTKNPGNF Run BLAST on NCBI transcript from alignment at scaffold_14:371975..373137 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048081 ID=TCONS_00048081|Name=TCONS_00048081|organism=Clytia hemisphaerica|type=transcript|length=1163bp|location=Sequence derived from alignment at scaffold_14:371975..373137 (Clytia hemisphaerica)
CCAAGCAAAAATTGGAATGGGCTACATAAATTTGGCACGGACGAGTCGCG
TTTTGTTAAAAGGCCAGTATTTAGgtccaaaaacaaaaacaaacgaaGTG
AAATCCCTGATGGTGTTCTCTTAAGCGAAGAGACTGGGAAGGATATTAAA
GATGGTAGCCCAATTGTTGAGCTTACAACAACAGCCAATGGAAAGACACG
AATGTTTGTAGATTCGAATGTTGACGTCACTCAAAATGGTGCCAAGAAtg
aagaaagtttaaaaaaccgGAAACATGGTATACAAATGCttgatttgttt
gaaaatgatAATAATGTTGATTCCGATGCTGAAGTATTGAGTGAAACTAC
GCATGCGTTAGAAGAACAACAAGGAATGAAGAAGGGTGTAACCATTACAG
AAACGAGTGAAGAAACATCTAGATTACGACAAGAAAGTGATAATCCTACT
AAAGAAGAAAAAGGCGAAAAGAAAAATACTGTAATAAATGATGGCCAATC
AGATACAAAAGCCTCTTTATCGACTCCAGAAAACCAAAATATTGTTGAAT
TAACCCCAGATAATACTAAAATCGTTGGTAACAAAGAGGAAGTGACGAAT
CTAAAACATGGGGATGACTCAGAAGAAGTTGGGAATCTTAAAAGTCTTCC
TCAGAATATTGGTTTAACTGCAATTCATGGTCAGAATCCAACAGCTGTTT
CAACTGCTGAGAGTCAGTTTGAAAACTCTTTAGATACGAAGGTCAAGCTA
TCTCCTTTATATTTTGGGAAAAGCAAAGATGAAAGTCATTCGGGAAGCAT
TTCAAGTGAGAAGCAATCATCTCCACCATCTATAACTGATGATTCATTAT
CTCCTTTAACTATTGGAAATGAGACAGAAGGAATACAATCACATGGTGTC
TCAACGGAAGACAGATTATCTCCACCATCCAATGTGAAAGAGAAGCAAAG
CACCAATAGAACGATTGGATCAAACAACGAGGACATAAATCCAAATCAAA
GTCAACAAATAGGGAACGTGAACTTCAAAATTATTGAATCTGATACAAAA
CCAAAACATAGCGATAATGTGATTCCAAGTTCGTTCAATTCTACTGGAAA
TAATGTCCAAAGAACAGATGATATTGGCAATTCTTTGAATACTAAAAATC
CTGGTAATTTCAT Coding sequence (CDS) from alignment at scaffold_14:371975..373137 >TCONS_00048081 ID=TCONS_00048081|Name=TCONS_00048081|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_14:371975..373137 (Clytia hemisphaerica)
CCAAGCAAAAATTGGAATGGGCTACATAAATTTGGCACGGACGAGTCGCG
TTTTGTTAAAAGGCCAGTATTTAGgtccaaaaacaaaaacaaacgaaGTG
AAATCCCTGATGGTGTTCTCTTAAGCGAAGAGACTGGGAAGGATATTAAA
GATGGTAGCCCAATTGTTGAGCTTACAACAACAGCCAATGGAAAGACACG
AATGTTTGTAGATTCGAATGTTGACGTCACTCAAAATGGTGCCAAGAAtg
aagaaagtttaaaaaaccgGAAACATGGTATACAAATGCttgatttgttt
gaaaatgatAATAATGTTGATTCCGATGCTGAAGTATTGAGTGAAACTAC
GCATGCGTTAGAAGAACAACAAGGAATGAAGAAGGGTGTAACCATTACAG
AAACGAGTGAAGAAACATCTAGATTACGACAAGAAAGTGATAATCCTACT
AAAGAAGAAAAAGGCGAAAAGAAAAATACTGTAATAAATGATGGCCAATC
AGATACAAAAGCCTCTTTATCGACTCCAGAAAACCAAAATATTGTTGAAT
TAACCCCAGATAATACTAAAATCGTTGGTAACAAAGAGGAAGTGACGAAT
CTAAAACATGGGGATGACTCAGAAGAAGTTGGGAATCTTAAAAGTCTTCC
TCAGAATATTGGTTTAACTGCAATTCATGGTCAGAATCCAACAGCTGTTT
CAACTGCTGAGAGTCAGTTTGAAAACTCTTTAGATACGAAGGTCAAGCTA
TCTCCTTTATATTTTGGGAAAAGCAAAGATGAAAGTCATTCGGGAAGCAT
TTCAAGTGAGAAGCAATCATCTCCACCATCTATAACTGATGATTCATTAT
CTCCTTTAACTATTGGAAATGAGACAGAAGGAATACAATCACATGGTGTC
TCAACGGAAGACAGATTATCTCCACCATCCAATGTGAAAGAGAAGCAAAG
CACCAATAGAACGATTGGATCAAACAACGAGGACATAAATCCAAATCAAA
GTCAACAAATAGGGAACGTGAACTTCAAAATTATTGAATCTGATACAAAA
CCAAAACATAGCGATAATGTGATTCCAAGTTCGTTCAATTCTACTGGAAA
TAATGTCCAAAGAACAGATGATATTGGCAATTCTTTGAATACTAAAAATC
CTGGTAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048081-exon-scaffold_14-1491911889:371975..373137 | TCONS_00048081-exon-scaffold_14-1491911889:371975..373137 | Clytia hemisphaerica | exon |
| TCONS_00048081-exon-scaffold_14-1510915933:371975..373137 | TCONS_00048081-exon-scaffold_14-1510915933:371975..373137 | Clytia hemisphaerica | exon |
| TCONS_00048081-exon-scaffold_14-1575043694:371975..373137 | TCONS_00048081-exon-scaffold_14-1575043694:371975..373137 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:371975..373137 . |
Blast
The following BLAST results are available for this feature:
|
