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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048082 ID=TCONS_00048082|Name=TCONS_00048082|organism=Clytia hemisphaerica|type=transcript|length=3121bp
CAATCATGTCTGGTTATCGAGTCCTCAGTGAGGCGGTGTGCCTTCAGTGG
GGTAGGGCTTGAAAAATTTAGGAGGATGGCTCTCCCTGAGCGTGAGAGAG
GACACAAGAGCGACACACAGGAAGGGCTTCATATATTGATAAAAATTTGT
AAGAATTTAAAATTCTACAATTTTTTATTCCTGATTCCCATACACACATC
AACTAAGAAAAAATAGAATAGAATTATTCTGGTGTTGCTAAAAAGCTGGG
CAGTATAGATCACTGCACTCTCAGGACCAATCTGAGTCACAAAAGCAGAT
GTATATATTAATGAATGTTAGTAAGAATTTCTTAATCTTCTTTACGCGTT
TTTCATATAATCACGCCTTCCAAAAGGGACAATAACAACGCCCTTGTCCA
CCCTTTTTGCAAATCCACGATCGGGCTTCCCTAAATCGTCCNACGCCCTT
GTCCACCCTTTTCGCAAATCCGCGATCGGGCTTCCCTAAATCGTCCTACG
GTCGCTCTTAGGTCCAGACCAACTTGAGCCACCAAAAGCAGATGTATATA
TTGTTAAAAGCTAGTAAGAATTTCTTAATCTTCTTTATGTGATTCAATAT
TGTGCCACTCTTCACCAAACTCGTTTTTCATATAATCACGCCCTCCAAAA
GGTACAATAACAACGCCCTTCTCCGCCCTTTTGGCGAATCCACGATCGGG
CTTCCCTAAATCGTCCTCGTCGTTATCATTATCACGAGAGCTTGATTtcg
tatcgaaattattttgtaTCTCTGATGTAGTCTTAACCGATCCTTCAAAA
TTATCATTAGttttaaaatcaagatttccaatgtttttattttttcgatc
CGAATCTTTAAAGTCTTTAACATTTTCATGATTCGAAGCAATGTCCGTTA
ATGATGGTTTACGATTTTCTCCTAGCTCATTAGAATTGGAAtccattgtt
tttgaaaactctGATTGGTTAGAATCCGAATTTTTCTCGTCGCCTATTGG
TTGAGACACATTTTCCTTTGTTTCTTCCTCATCTCCTGATTGGTCATCGT
TGTCATCATCTACGGAGTCTGATTGGTTCATCTTTTTAATACTCGAAGCT
GATTGGTACTCTATTTcatttttcgtttttgattGGTTCAAATTCATAAC
AATTGAATCAACCTTGTCATTTGATTGGCTCAATTTTTTACTATCGAAAT
TTCTGACCCCCGCATTGCTTGTTAGCATTGCTTTCAAAGTCGGTTTCGAT
CTTTCAACAACCAAGGTCCCCTTCTTTGTTGGTTGGCAATCACGCTTCCA
ACGCGCCCCACCACACCCTCCTCTATAGGGCGGATCAGGTAATATAGCGG
GCGGTGATTCGTGAGCACCCACAAGGGCGCCTGCAGCACCATGTAGTTGC
ATTCCACCAAGACCAGCAATCATACCACCAAAGGAATCCATATTCTGTCC
ACTCAACAATTGCGTAATCATCTGCCCCTTCTGGCTACTCGCACCAAATT
TTTTGGCAATCAAAGATTGAAGCATTTCAAAAGATCCTTGACCTCCAAAA
CCACCCAACGCCCCTCCACCCGCTAACATAGCTCCATTTTCTCCAACGGC
TAACCCAGCTGGTGGCGCCACAAATCCTGGCTGCCCATACCCAGCCATAT
GACGAATATTGACGTCAGATATGTGATTAACAACCGGTGTGGCAGCAACC
TCAGCTCTCCCGGCACCTGTTGTTTTCCGTAAAACAGCTTGCTTTAAGAT
TCCTTTTAAGATAATTGGCATTAATGCTTTTAAAGCTGCATTGACCACAT
CCGTTTTTTGTTGAGCACTTAATCCTCGTTTTACAAGTCGTCCAACAGGA
GTTGATCGTTcgagaagtttgtttttgaatgATTCAGGTTTCGAATTTTC
GATTAAAGTTCCACTTTTTATGTTTGGACTTCCTTTTATATTTTGCGGAT
TGGAACTTTGAGACAGGGTTGATCGTTTATAATTACTGatctttttcaaa
tgtttggaACCAAAGTTCCCCAAAGTTTCCTCAGTGTGACGTTTCAATCT
TGATAGTTCGTCTGAGAGCGTCGGGTCAGTGGTTGTATCACTCGAACTTG
TATCTCTGGTAAAATTGCGAATCAATTCGTTCTTCTCTATTTGATTGTAT
TCACTGATTGCACTGGAATGGTCAGAATTTTGCATTTGAGGGTTGACGTT
ATTTTCGATAGTTTTTCCGAGTCTATTTTTACTTGCAATGTCCTGTTGTT
CAGATTGCCTTGCTGGTAGAGCTTGCTGTAAATTCTTTGGTTTTGTACTT
CCATTGGAATCTTGGTTGCTGTTTTGTTGAACTATTTCAACAACTTCTTG
TGAGTCTTCTTTGAGATTCAAACTGGTGTTTTTGTTTCCATCATCTGTTG
ATTGCAGCTCTTTCTGTTGAGATGGTTTATCTACATCATTGCTGTGATTG
TTGTTGTGTGTTGTATCTTCTGGAGTTGAAGTCATCATCTGCTGTTGATA
GACACCTTCTTGGTCCTTTTGTTTTTGTCCAAGAGGCTCCTCGGTTGATG
GTATTACTTTCCCTGTGAAATTTACTTGATTATTGTTTTTCAGATCTTGT
TGGCCATTTAGAGATGTAGGtgtttcattgttattttttttatctgttGT
CATTGATGCTTGACCTCCAGCCAGAGATGTTGGCAATGTACCAGGATGTG
AGTCACCAGTATTTGGCTTCTCCTTCTTGTTTCCCGATCCTTTATCTCCA
CTTGAAGATATTGGTAATGTACCAGAATGGGAGTCACTAGCATTTAGATT
CTCATCTTTGTTTCCCGATCCTTGATCTCCACTCAGAGATGTTGACAATG
TATCGGAATGCGAGTCACCAGCATTTGACTTTTCGTTCTTGTTTCCTGAT
CCTTGACCTCCAGTCAGAGATGTTGGCAATTCTGTATGCAAGTCACCAGT
ATTTGAAGTAGTATTCAATATATTCGTCATGGTGTGTAAATTTTCAGCAT
GTTTCTCTTTCATGACTTCTGGGATGCCTTGGTGATCATGGTTCTTTTTG
ATTGAAGATGTCCCATTAACGCTTGCAACATTTTGACCAGCACTTGAAGA
ACCCTCAATAGGCCCATCCAC Run BLAST on NCBI protein sequence of TCONS_00048082-protein >TCONS_00048082-protein ID=TCONS_00048082-protein|Name=TCONS_00048082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=848bp
VDGPIEGSSSAGQNVASVNGTSSIKKNHDHQGIPEVMKEKHAENLHTMTN
ILNTTSNTGDLHTELPTSLTGGQGSGNKNEKSNAGDSHSDTLSTSLSGDQ
GSGNKDENLNASDSHSGTLPISSSGDKGSGNKKEKPNTGDSHPGTLPTSL
AGGQASMTTDKKNNNETPTSLNGQQDLKNNNQVNFTGKVIPSTEEPLGQK
QKDQEGVYQQQMMTSTPEDTTHNNNHSNDVDKPSQQKELQSTDDGNKNTS
LNLKEDSQEVVEIVQQNSNQDSNGSTKPKNLQQALPARQSEQQDIASKNR
LGKTIENNVNPQMQNSDHSSAISEYNQIEKNELIRNFTRDTSSSDTTTDP
TLSDELSRLKRHTEETLGNFGSKHLKKISNYKRSTLSQSSNPQNIKGSPN
IKSGTLIENSKPESFKNKLLERSTPVGRLVKRGLSAQQKTDVVNAALKAL
MPIILKGILKQAVLRKTTGAGRAEVAATPVVNHISDVNIRHMAGYGQPGF
VAPPAGLAVGENGAMLAGGGALGGFGGQGSFEMLQSLIAKKFGASSQKGQ
MITQLLSGQNMDSFGGMIAGLGGMQLHGAAGALVGAHESPPAILPDPPYR
GGCGGARWKRDCQPTKKGTLVVERSKPTLKAMLTSNAGVRNFDSKKLSQS
NDKVDSIVMNLNQSKTKNEIEYQSASSIKKMNQSDSVDDDNDDQSGDEEE
TKENVSQPIGDEKNSDSNQSEFSKTMDSNSNELGENRKPSLTDIASNHEN
VKDFKDSDRKNKNIGNLDFKTNDNFEGSVKTTSEIQNNFDTKSSSRDNDN
DEDDLGKPDRGFAKRAEKGVVIVPFGGRDYMKNEFGEEWHNIESHKED Run BLAST on NCBI transcript from alignment at scaffold_14:373208..376328 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048082 ID=TCONS_00048082|Name=TCONS_00048082|organism=Clytia hemisphaerica|type=transcript|length=3121bp|location=Sequence derived from alignment at scaffold_14:373208..376328 (Clytia hemisphaerica)
GTGGATGGGCCTATTGAGGGTTCTTCAAGTGCTGGTCAAAATGTTGCAAG
CGTTAATGGGACATCTTCAATCAAAAAGAACCATGATCACCAAGGCATCC
CAGAAGTCATGAAAGAGAAACATGCTGAAAATTTACACACCATGACGAAT
ATATTGAATACTACTTCAAATACTGGTGACTTGCATACAGAATTGCCAAC
ATCTCTGACTGGAGGTCAAGGATCAGGAAACAAGAACGAAAAGTCAAATG
CTGGTGACTCGCATTCCGATACATTGTCAACATCTCTGAGTGGAGATCAA
GGATCGGGAAACAAAGATGAGAATCTAAATGCTAGTGACTCCCATTCTGG
TACATTACCAATATCTTCAAGTGGAGATAAAGGATCGGGAAACAAGAAGG
AGAAGCCAAATACTGGTGACTCACATCCTGGTACATTGCCAACATCTCTG
GCTGGAGGTCAAGCATCAATGACaacagataaaaaaaataacaatgaaac
aCCTACATCTCTAAATGGCCAACAAGATCTGAAAAACAATAATCAAGTAA
ATTTCACAGGGAAAGTAATACCATCAACCGAGGAGCCTCTTGGACAAAAA
CAAAAGGACCAAGAAGGTGTCTATCAACAGCAGATGATGACTTCAACTCC
AGAAGATACAACACACAACAACAATCACAGCAATGATGTAGATAAACCAT
CTCAACAGAAAGAGCTGCAATCAACAGATGATGGAAACAAAAACACCAGT
TTGAATCTCAAAGAAGACTCACAAGAAGTTGTTGAAATAGTTCAACAAAA
CAGCAACCAAGATTCCAATGGAAGTACAAAACCAAAGAATTTACAGCAAG
CTCTACCAGCAAGGCAATCTGAACAACAGGACATTGCAAGTAAAAATAGA
CTCGGAAAAACTATCGAAAATAACGTCAACCCTCAAATGCAAAATTCTGA
CCATTCCAGTGCAATCAGTGAATACAATCAAATAGAGAAGAACGAATTGA
TTCGCAATTTTACCAGAGATACAAGTTCGAGTGATACAACCACTGACCCG
ACGCTCTCAGACGAACTATCAAGATTGAAACGTCACACTGAGGAAACTTT
GGGGAACTTTGGTtccaaacatttgaaaaagatCAGTAATTATAAACGAT
CAACCCTGTCTCAAAGTTCCAATCCGCAAAATATAAAAGGAAGTCCAAAC
ATAAAAAGTGGAACTTTAATCGAAAATTCGAAACCTGAATcattcaaaaa
caaacttctcgAACGATCAACTCCTGTTGGACGACTTGTAAAACGAGGAT
TAAGTGCTCAACAAAAAACGGATGTGGTCAATGCAGCTTTAAAAGCATTA
ATGCCAATTATCTTAAAAGGAATCTTAAAGCAAGCTGTTTTACGGAAAAC
AACAGGTGCCGGGAGAGCTGAGGTTGCTGCCACACCGGTTGTTAATCACA
TATCTGACGTCAATATTCGTCATATGGCTGGGTATGGGCAGCCAGGATTT
GTGGCGCCACCAGCTGGGTTAGCCGTTGGAGAAAATGGAGCTATGTTAGC
GGGTGGAGGGGCGTTGGGTGGTTTTGGAGGTCAAGGATCTTTTGAAATGC
TTCAATCTTTGATTGCCAAAAAATTTGGTGCGAGTAGCCAGAAGGGGCAG
ATGATTACGCAATTGTTGAGTGGACAGAATATGGATTCCTTTGGTGGTAT
GATTGCTGGTCTTGGTGGAATGCAACTACATGGTGCTGCAGGCGCCCTTG
TGGGTGCTCACGAATCACCGCCCGCTATATTACCTGATCCGCCCTATAGA
GGAGGGTGTGGTGGGGCGCGTTGGAAGCGTGATTGCCAACCAACAAAGAA
GGGGACCTTGGTTGTTGAAAGATCGAAACCGACTTTGAAAGCAATGCTAA
CAAGCAATGCGGGGGTCAGAAATTTCGATAGTAAAAAATTGAGCCAATCA
AATGACAAGGTTGATTCAATTGTTATGAATTTGAACCaatcaaaaacgaa
aaatgAAATAGAGTACCAATCAGCTTCGAGTATTAAAAAGATGAACCAAT
CAGACTCCGTAGATGATGACAACGATGACCAATCAGGAGATGAGGAAGAA
ACAAAGGAAAATGTGTCTCAACCAATAGGCGACGAGAAAAATTCGGATTC
TAACCAATCagagttttcaaaaacaatggaTTCCAATTCTAATGAGCTAG
GAGAAAATCGTAAACCATCATTAACGGACATTGCTTCGAATCATGAAAAT
GTTAAAGACTTTAAAGATTCGgatcgaaaaaataaaaacattggaaatct
tgattttaaaaCTAATGATAATTTTGAAGGATCGGTTAAGACTACATCAG
AGAtacaaaataatttcgatacgaAATCAAGCTCTCGTGATAATGATAAC
GACGAGGACGATTTAGGGAAGCCCGATCGTGGATTCGCCAAAAGGGCGGA
GAAGGGCGTTGTTATTGTACCTTTTGGAGGGCGTGATTATATGAAAAACG
AGTTTGGTGAAGAGTGGCACAATATTGAATCACATAAAGAAGATTAAGAA
ATTCTTACTAGCTTTTAACAATATATACATCTGCTTTTGGTGGCTCAAGT
TGGTCTGGACCTAAGAGCGACCGTAGGACGATTTAGGGAAGCCCGATCGC
GGATTTGCGAAAAGGGTGGACAAGGGCGTNGGACGATTTAGGGAAGCCCG
ATCGTGGATTTGCAAAAAGGGTGGACAAGGGCGTTGTTATTGTCCCTTTT
GGAAGGCGTGATTATATGAAAAACGCGTAAAGAAGATTAAGAAATTCTTA
CTAACATTCATTAATATATACATCTGCTTTTGTGACTCAGATTGGTCCTG
AGAGTGCAGTGATCTATACTGCCCAGCTTTTTAGCAACACCAGAATAATT
CTATTCTATTTTTTCTTAGTTGATGTGTGTATGGGAATCAGGAATAAAAA
ATTGTAGAATTTTAAATTCTTACAAATTTTTATCAATATATGAAGCCCTT
CCTGTGTGTCGCTCTTGTGTCCTCTCTCACGCTCAGGGAGAGCCATCCTC
CTAAATTTTTCAAGCCCTACCCCACTGAAGGCACACCGCCTCACTGAGGA
CTCGATAACCAGACATGATTG Coding sequence (CDS) from alignment at scaffold_14:373208..376328 >TCONS_00048082 ID=TCONS_00048082|Name=TCONS_00048082|organism=Clytia hemisphaerica|type=CDS|length=2547bp|location=Sequence derived from alignment at scaffold_14:373208..376328 (Clytia hemisphaerica)
GTGGATGGGCCTATTGAGGGTTCTTCAAGTGCTGGTCAAAATGTTGCAAG
CGTTAATGGGACATCTTCAATCAAAAAGAACCATGATCACCAAGGCATCC
CAGAAGTCATGAAAGAGAAACATGCTGAAAATTTACACACCATGACGAAT
ATATTGAATACTACTTCAAATACTGGTGACTTGCATACAGAATTGCCAAC
ATCTCTGACTGGAGGTCAAGGATCAGGAAACAAGAACGAAAAGTCAAATG
CTGGTGACTCGCATTCCGATACATTGTCAACATCTCTGAGTGGAGATCAA
GGATCGGGAAACAAAGATGAGAATCTAAATGCTAGTGACTCCCATTCTGG
TACATTACCAATATCTTCAAGTGGAGATAAAGGATCGGGAAACAAGAAGG
AGAAGCCAAATACTGGTGACTCACATCCTGGTACATTGCCAACATCTCTG
GCTGGAGGTCAAGCATCAATGACaacagataaaaaaaataacaatgaaac
aCCTACATCTCTAAATGGCCAACAAGATCTGAAAAACAATAATCAAGTAA
ATTTCACAGGGAAAGTAATACCATCAACCGAGGAGCCTCTTGGACAAAAA
CAAAAGGACCAAGAAGGTGTCTATCAACAGCAGATGATGACTTCAACTCC
AGAAGATACAACACACAACAACAATCACAGCAATGATGTAGATAAACCAT
CTCAACAGAAAGAGCTGCAATCAACAGATGATGGAAACAAAAACACCAGT
TTGAATCTCAAAGAAGACTCACAAGAAGTTGTTGAAATAGTTCAACAAAA
CAGCAACCAAGATTCCAATGGAAGTACAAAACCAAAGAATTTACAGCAAG
CTCTACCAGCAAGGCAATCTGAACAACAGGACATTGCAAGTAAAAATAGA
CTCGGAAAAACTATCGAAAATAACGTCAACCCTCAAATGCAAAATTCTGA
CCATTCCAGTGCAATCAGTGAATACAATCAAATAGAGAAGAACGAATTGA
TTCGCAATTTTACCAGAGATACAAGTTCGAGTGATACAACCACTGACCCG
ACGCTCTCAGACGAACTATCAAGATTGAAACGTCACACTGAGGAAACTTT
GGGGAACTTTGGTtccaaacatttgaaaaagatCAGTAATTATAAACGAT
CAACCCTGTCTCAAAGTTCCAATCCGCAAAATATAAAAGGAAGTCCAAAC
ATAAAAAGTGGAACTTTAATCGAAAATTCGAAACCTGAATcattcaaaaa
caaacttctcgAACGATCAACTCCTGTTGGACGACTTGTAAAACGAGGAT
TAAGTGCTCAACAAAAAACGGATGTGGTCAATGCAGCTTTAAAAGCATTA
ATGCCAATTATCTTAAAAGGAATCTTAAAGCAAGCTGTTTTACGGAAAAC
AACAGGTGCCGGGAGAGCTGAGGTTGCTGCCACACCGGTTGTTAATCACA
TATCTGACGTCAATATTCGTCATATGGCTGGGTATGGGCAGCCAGGATTT
GTGGCGCCACCAGCTGGGTTAGCCGTTGGAGAAAATGGAGCTATGTTAGC
GGGTGGAGGGGCGTTGGGTGGTTTTGGAGGTCAAGGATCTTTTGAAATGC
TTCAATCTTTGATTGCCAAAAAATTTGGTGCGAGTAGCCAGAAGGGGCAG
ATGATTACGCAATTGTTGAGTGGACAGAATATGGATTCCTTTGGTGGTAT
GATTGCTGGTCTTGGTGGAATGCAACTACATGGTGCTGCAGGCGCCCTTG
TGGGTGCTCACGAATCACCGCCCGCTATATTACCTGATCCGCCCTATAGA
GGAGGGTGTGGTGGGGCGCGTTGGAAGCGTGATTGCCAACCAACAAAGAA
GGGGACCTTGGTTGTTGAAAGATCGAAACCGACTTTGAAAGCAATGCTAA
CAAGCAATGCGGGGGTCAGAAATTTCGATAGTAAAAAATTGAGCCAATCA
AATGACAAGGTTGATTCAATTGTTATGAATTTGAACCaatcaaaaacgaa
aaatgAAATAGAGTACCAATCAGCTTCGAGTATTAAAAAGATGAACCAAT
CAGACTCCGTAGATGATGACAACGATGACCAATCAGGAGATGAGGAAGAA
ACAAAGGAAAATGTGTCTCAACCAATAGGCGACGAGAAAAATTCGGATTC
TAACCAATCagagttttcaaaaacaatggaTTCCAATTCTAATGAGCTAG
GAGAAAATCGTAAACCATCATTAACGGACATTGCTTCGAATCATGAAAAT
GTTAAAGACTTTAAAGATTCGgatcgaaaaaataaaaacattggaaatct
tgattttaaaaCTAATGATAATTTTGAAGGATCGGTTAAGACTACATCAG
AGAtacaaaataatttcgatacgaAATCAAGCTCTCGTGATAATGATAAC
GACGAGGACGATTTAGGGAAGCCCGATCGTGGATTCGCCAAAAGGGCGGA
GAAGGGCGTTGTTATTGTACCTTTTGGAGGGCGTGATTATATGAAAAACG
AGTTTGGTGAAGAGTGGCACAATATTGAATCACATAAAGAAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048082-exon-scaffold_14-1491911889:373208..376328 | TCONS_00048082-exon-scaffold_14-1491911889:373208..376328 | Clytia hemisphaerica | exon |
| TCONS_00048082-exon-scaffold_14-1510915933:373208..376328 | TCONS_00048082-exon-scaffold_14-1510915933:373208..376328 | Clytia hemisphaerica | exon |
| TCONS_00048082-exon-scaffold_14-1575043694:373208..376328 | TCONS_00048082-exon-scaffold_14-1575043694:373208..376328 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:373208..376328 . |
Blast
The following BLAST results are available for this feature:
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