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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048084 ID=TCONS_00048084|Name=TCONS_00048084|organism=Clytia hemisphaerica|type=transcript|length=1068bp
attttttcgataattcTTTTGCTAAATATtataaatttttccaaattttt
atatgtacattatatattattataaaactttctttttttgaaaaaataca
aaataaattaaaaatcgaagaaaaaattgaaaaaattttcaagaaaaaat
acgACATTTGCATAAAATTATGAAGCTTGAGGCAAAAAGAGTACTTTGCG
GGAACTTTTGCAAATATCGATGAAAGTCATCAAATAACtgatttaaaatt
aattttggaagaagaaaaataaataaacatcaATGCCATTCTAATCTGAA
TCTAAAATGCGATCCGATGGTCCATCCAGAAGTTCTCGTAGACTTCCAAT
ATAATGTTTTGCCAGTCTCAAAGTTTCAATCTGCGTCAGTTTTTGTCCTT
TTTTACATGGTGTTAAAAATTCTGGAATTGTATCACGTAAAACATCAAAA
GCATCATTCAATCGGTTTTGTCGGGCACGTTCCCGTTCATTACGTCGTAA
TTGCCGCTCACGTAAGACTTTTTCGGGTAATTTACGCTTCTTTGTGACAC
GTTTACGCCACGGTTTCGTCGGTACGGCAGGAAAAGGTGATTCCGTATTA
TAAAATGCCGGAAAATCTTGATAGTTATAACAGTGGTATGGCAAACCGAG
TAATCCAGTTTGATGTTGACCTGTTTGGAAGTGAGTTCCGCTGTCTGGGT
GTACCGGGAAATTATTGTTTTGATCCGGAATTGCATTTGATTCGCCGAAC
TGTTGCTGCatgtgaaaaagtttgaaatcagTTGGTTCGCTAAGTCCATG
CGACGCCATCATTATCACCGCTGTACCAATTATCAAACAATCAAAGTATc
aatttcaatttgattttaaacCGCTGGTCAAAATTGTTATGATTCAAATG
CGAATTCTAAGTCAATCCAACCGCTGTACAACTTGATCTTGGGTTcgtgt
ttgatttttttcacaacCGCTGGAAAGTGATCTTTTCTCGACCGCTGATC
AGTTTAAAGTGCTCGAACGAGGATTATGGAAAAATTTTATAGTCTCATCT
CAAAACAATAAAGATTAA Run BLAST on NCBI protein sequence of MIST-a >TCONS_00048084-protein ID=TCONS_00048084-protein|Name=MIST-a|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MMASHGLSEPTDFKLFHMQQQFGESNAIPDQNNNFPVHPDSGTHFQTGQH
QTGLLGLPYHCYNYQDFPAFYNTESPFPAVPTKPWRKRVTKKRKLPEKVL
RERQLRRNERERARQNRLNDAFDVLRDTIPEFLTPCKKGQKLTQIETLRL
AKHYIGSLRELLDGPSDRILDSD Run BLAST on NCBI transcript from alignment at scaffold_14:390268..391335 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048084 ID=TCONS_00048084|Name=TCONS_00048084|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_14:390268..391335 (Clytia hemisphaerica)
TTAATCTTTATTGTTTTGAGATGAGACTATAAAATTTTTCCATAATCCTC
GTTCGAGCACTTTAAACTGATCAGCGGTCGAGAAAAGATCACTTTCCAGC
GgttgtgaaaaaaatcaaacacgAACCCAAGATCAAGTTGTACAGCGGTT
GGATTGACTTAGAATTCGCATTTGAATCATAACAATTTTGACCAGCGgtt
taaaatcaaattgaaattgATACTTTGATTGTTTGATAATTGGTACAGCG
GTGATAATGATGGCGTCGCATGGACTTAGCGAACCAActgatttcaaact
ttttcacatGCAGCAACAGTTCGGCGAATCAAATGCAATTCCGGATCAAA
ACAATAATTTCCCGGTACACCCAGACAGCGGAACTCACTTCCAAACAGGT
CAACATCAAACTGGATTACTCGGTTTGCCATACCACTGTTATAACTATCA
AGATTTTCCGGCATTTTATAATACGGAATCACCTTTTCCTGCCGTACCGA
CGAAACCGTGGCGTAAACGTGTCACAAAGAAGCGTAAATTACCCGAAAAA
GTCTTACGTGAGCGGCAATTACGACGTAATGAACGGGAACGTGCCCGACA
AAACCGATTGAATGATGCTTTTGATGTTTTACGTGATACAATTCCAGAAT
TTTTAACACCATGTAAAAAAGGACAAAAACTGACGCAGATTGAAACTTTG
AGACTGGCAAAACATTATATTGGAAGTCTACGAGAACTTCTGGATGGACC
ATCGGATCGCATTTTAGATTCAGATTAGAATGGCATtgatgtttatttat
ttttcttcttccaaaattaattttaaatcaGTTATTTGATGACTTTCATC
GATATTTGCAAAAGTTCCCGCAAAGTACTCTTTTTGCCTCAAGCTTCATA
ATTTTATGCAAATGTcgtattttttcttgaaaattttttcaattttttct
tcgatttttaatttattttgtattttttcaaaaaaagaaagttttataat
aatatataatgtacatataaaaatttggaaaaatttataATATTTAGCAA
AAgaattatcgaaaaaat Coding sequence (CDS) from alignment at scaffold_14:390268..391335 >TCONS_00048084 ID=TCONS_00048084|Name=TCONS_00048084|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_14:390268..391335 (Clytia hemisphaerica)
ATGATGGCGTCGCATGGACTTAGCGAACCAActgatttcaaactttttca
catGCAGCAACAGTTCGGCGAATCAAATGCAATTCCGGATCAAAACAATA
ATTTCCCGGTACACCCAGACAGCGGAACTCACTTCCAAACAGGTCAACAT
CAAACTGGATTACTCGGTTTGCCATACCACTGTTATAACTATCAAGATTT
TCCGGCATTTTATAATACGGAATCACCTTTTCCTGCCGTACCGACGAAAC
CGTGGCGTAAACGTGTCACAAAGAAGCGTAAATTACCCGAAAAAGTCTTA
CGTGAGCGGCAATTACGACGTAATGAACGGGAACGTGCCCGACAAAACCG
ATTGAATGATGCTTTTGATGTTTTACGTGATACAATTCCAGAATTTTTAA
CACCATGTAAAAAAGGACAAAAACTGACGCAGATTGAAACTTTGAGACTG
GCAAAACATTATATTGGAAGTCTACGAGAACTTCTGGATGGACCATCGGA
TCGCATTTTAGATTCAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048084-exon-scaffold_14-1491911889:390268..391335 | TCONS_00048084-exon-scaffold_14-1491911889:390268..391335 | Clytia hemisphaerica | exon |
| TCONS_00048084-exon-scaffold_14-1510915933:390268..391335 | TCONS_00048084-exon-scaffold_14-1510915933:390268..391335 | Clytia hemisphaerica | exon |
| TCONS_00048084-exon-scaffold_14-1575043694:390268..391335 | TCONS_00048084-exon-scaffold_14-1575043694:390268..391335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:390268..391335 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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