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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048037 ID=TCONS_00048037|Name=TCONS_00048037|organism=Clytia hemisphaerica|type=transcript|length=1300bpRun BLAST on NCBI protein sequence of TCONS_00048037-protein >TCONS_00048037-protein ID=TCONS_00048037-protein|Name=TCONS_00048037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp NQRITIKQRYKTSAKKEQRIPRTAFWANEIAQSGGHWSFSGITTLQSNDTRun BLAST on NCBI transcript from alignment at scaffold_14:542162..549260- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048037 ID=TCONS_00048037|Name=TCONS_00048037|organism=Clytia hemisphaerica|type=transcript|length=7099bp|location=Sequence derived from alignment at scaffold_14:542162..549260- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_14:542162..549260- >TCONS_00048037 ID=TCONS_00048037|Name=TCONS_00048037|organism=Clytia hemisphaerica|type=CDS|length=14148bp|location=Sequence derived from alignment at scaffold_14:542162..549260- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048037 vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 4.115e-69 Identity = 131/352 (37.22%), Postives = 195/352 (55.40%), Query Frame = 1
Query: 4 QRITIKQRYKTSAKKEQRIPRTAFWANEIAQSGGHWSFSGITTLQSNDTTITSSVHHLTSFAVLVQVTDFEISEEHQLALSIITYVGCGFS---LFAYLLTFGTLASIEALASERSRVHLNLVLALGIGQAIFLLGISATGNTAVCTGIAVSLHYFFTAGFSWMLVEGLVLYSKVVRVFHNGKNYIKYYLCIGWGLPAILVGISTAIKSDGYGNDRYCWISIEDGLVWAFVGPVVAVILINLFILVWVIKILMTSVSGPVSTHPKTKEQIRAAIKGILMLTPILGITWVFGMFAVDSKTIVMQYIFTIFNAFQGLVIFGFYCIGNNEVQTALKRLHLKHTENFTSSLFRNTN 1050
R+T KQ + + + AF + + G WS G + N T HLT+FA+L+QV E++ HQ+ALS I+YVGC S L A L+TF L+S+ + ++R +H NL A+ + Q + L+ T C +AV LHYFF + F+WMLVEGL LYS V++VF + + +YY +GWG P ++ IS + D YG CW+S+ G +WAFV P + VI++N+ IL+ V +++ + H + K + +L PILG +WVFG+ AV+ +V QY+F N+ QGL IF F+C+ N+EV+ A K H + TSS R +N
Sbjct: 489 HRLTRKQHSEATNSSNRVFVYCAFL--DFSSGEGVWSNHGCALTRGNLTYSVCRCTHLTNFAILMQVVPLELARGHQVALSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSKHRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIH-GDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFK--HKTKVWSLTSSSARTSN 835 The following BLAST results are available for this feature:
BLAST of TCONS_00048037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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