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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048090 ID=TCONS_00048090|Name=TCONS_00048090|organism=Clytia hemisphaerica|type=transcript|length=1942bp
TAAACTTTGTCATTGTGAAAATTAAACACAAACTTATTTAGATACTTTAG
TTACAAATAGTAGATGGTATAACATTTCGACAAACATATTTCACTGCACC
ATTAACAAACAAGAAGTTGCATTTCTTGGTGGACTTAGTGTTTTTAAAGC
AACTGGTTTTTCTTAAGTTATTAATACCCctatgaattttgaaaacttgt
ctttttatcaaaatttcgtCGTCTTCTTTCGCATTGTTTTCTCCCTTTCT
TTCAATATTCTCGCTATCATGGTTTTGAGGATAGTTTTGTCGGGCTTGGA
ATCGATAACCAAGCGTGCAAGTGAGAAGAGATGCCGCTGTCAAAAACAGG
ATAAGGTAGCAACGCATCTTTTGAACAGCACAAAGTTACTCTTCTGTTCT
TCCTTTTGCTCATgaagaactttctttcttcaTTTGTGGAAAGCAAACTC
CTTTTAATCAAGGATTTTAATTATTTCGGAATTATCATgtttaagaaaaa
aaagttcaaacatAAGGCACTATGTAAATTACTTTCTCATTAGCATAtaa
gatatacttcctatatttTGGACATCTGCAAAAGCAACCCTCTACACGAA
AAATAAGAATCGAATCATCTGTATGGTCCCTGTGGACGTTGTAACCGTTG
ACTCAACTTAAGAGCACTAgaaccaatcaaaagcgagttcATTGATATGA
ATATTAGTATATTTCaaaggtttaaatttttttttgattttcaaataaat
acaTTAAAGGCTATCGATATTAAATACAACAATCAAAGATTCGATATCTT
GTTGACAAACGTATTTGATAACACCCCCAGCAACAAGAACATATTCACAC
TCTTTGGTCTTTTCAACTAATTCAACTATGTtatttttcatcgaatttta
AACGAGGATGatatcaaagtcaattttccagtgggctcccaccggggctg
tgacaCAGCGAGTGTCTTATGGGAAGGGAAGAAATCAAAGCACTGTGCGA
CTGTGGTAATTACTTCTAGATTAGTTTaagtattaaaaaaaacatctgtT
AATAGCTTCTTAAACTAGTCTAAAAAGCAAAACCTCAACGTAGTATATTA
CGTTTTCAATCAAAGAACCCTCAATTTACAATAACACACCAGCCCCTGAA
AggttatctggtaccagatgggGAAAGGTGGTACGACGACACGCTTTGAT
TTGGAGGTCGGGTATATTGCatggtccgctcctttagagctttggcttgg
gcggccgccaatacgccatcaaGATATCAGATAACGAAGCTTCAAAGCTC
TCTTGACCGAACTGAATGCTCGTCTTCTCTAATATGAGAAAGTCAATTAC
AAGTAATGGTAGGCACTCGTTCACAAACAAATTTGAGCTCGCCATTCACA
AGAAGCCACCGACAAATTTGGGTATCAGTTTCAACACACGTTGGAGGTGA
ACGTACCGGCAAAGAAATCAGAGTACGTCGACGTCTCCTCCTTCTTCTCC
GTCTTCTATTCCGCTTACGTTTTCGTTTTTCATCAGCAGCTACTTTTTGA
ATCCAATCCTCGTCGAGTCTCTCGTACTCTTCTTCATCAAAGTCAGCATC
TTTCATTGATTCTAAATGTTGAACTTTCGATTCGTCCAAGCTGTATCCAT
TTTCAGAGCCAGCACTATCGTCTTCCAACAAAGTTTGCATATCATTATCC
TTTCCCTTGCTTTGAGTTCTATGCTCAGGATGATGAAAGTTATCCAATAA
AACCAACTTTGGATTATCAAAACTCTTAGAAAAATCATTCTCTCGGAAGT
TTTCCTTGTCTTCATTTTCTCTGATATAGGTTGCTGCTATTTCATAATTc
gaaagatatttcaaaaagctcaaaaataagaGTATTTTGAAGTACACAAA
CATAGCTGTGCTCTGGTactgtaaaaaaaacaacagaaaatc Run BLAST on NCBI protein sequence of TCONS_00048090-protein >TCONS_00048090-protein ID=TCONS_00048090-protein|Name=TCONS_00048090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
DFLLFFLQYQSTAMFVYFKILLFLSFLKYLSNYEIAATYIRENEDKENFR
ENDFSKSFDNPKLVLLDNFHHPEHRTQSKGKDNDMQTLLEDDSAGSENGY
SLDESKVQHLESMKDADFDEEEYERLDEDWIQKVAADEKRKRKRNRRRRR
RRRRRRTLISLPVRSPPTCVETDTQICRWLLVNGELKFVCERVPTITCN Run BLAST on NCBI transcript from alignment at scaffold_14:564735..566676 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048090 ID=TCONS_00048090|Name=TCONS_00048090|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at scaffold_14:564735..566676 (Clytia hemisphaerica)
gattttctgttgttttttttacagtACCAGAGCACAGCTATGTTTGTGTA
CTTCAAAATACtcttatttttgagctttttgaaatatctttcgAATTATG
AAATAGCAGCAACCTATATCAGAGAAAATGAAGACAAGGAAAACTTCCGA
GAGAATGATTTTTCTAAGAGTTTTGATAATCCAAAGTTGGTTTTATTGGA
TAACTTTCATCATCCTGAGCATAGAACTCAAAGCAAGGGAAAGGATAATG
ATATGCAAACTTTGTTGGAAGACGATAGTGCTGGCTCTGAAAATGGATAC
AGCTTGGACGAATCGAAAGTTCAACATTTAGAATCAATGAAAGATGCTGA
CTTTGATGAAGAAGAGTACGAGAGACTCGACGAGGATTGGATTCAAAAAG
TAGCTGCTGATGAAAAACGAAAACGTAAGCGGAATAGAAGACGGAGAAGA
AGGAGGAGACGTCGACGTACTCTGATTTCTTTGCCGGTACGTTCACCTCC
AACGTGTGTTGAAACTGATACCCAAATTTGTCGGTGGCTTCTTGTGAATG
GCGAGCTCAAATTTGTTTGTGAACGAGTGCCTACCATTACTTGTAATTGA
CTTTCTCATATTAGAGAAGACGAGCATTCAGTTCGGTCAAGAGAGCTTTG
AAGCTTCGTTATCTGATATCttgatggcgtattggcggccgcccaagcca
aagctctaaaggagcggaccatGCAATATACCCGACCTCCAAATCAAAGC
GTGTCGTCGTACCACCTTTCcccatctggtaccagataaccTTTCAGGGG
CTGGTGTGTTATTGTAAATTGAGGGTTCTTTGATTGAAAACGTAATATAC
TACGTTGAGGTTTTGCTTTTTAGACTAGTTTAAGAAGCTATTAacagatg
ttttttttaatacttAAACTAATCTAGAAGTAATTACCACAGTCGCACAG
TGCTTTGATTTCTTCCCTTCCCATAAGACACTCGCTGtgtcacagccccg
gtgggagcccactggaaaattgactttgatatCATCCTCGTTtaaaattc
gatgaaaaataACATAGTTGAATTAGTTGAAAAGACCAAAGAGTGTGAAT
ATGTTCTTGTTGCTGGGGGTGTTATCAAATACGTTTGTCAACAAGATATC
GAATCTTTGATTGTTGTATTTAATATCGATAGCCTTTAAtgtatttattt
gaaaatcaaaaaaaaatttaaacctttGAAATATACTAATATTCATATCA
ATgaactcgcttttgattggttcTAGTGCTCTTAAGTTGAGTCAACGGTT
ACAACGTCCACAGGGACCATACAGATGATTCGATTCTTATTTTTCGTGTA
GAGGGTTGCTTTTGCAGATGTCCAaaatataggaagtatatcttaTATGC
TAATGAGAAAGTAATTTACATAGTGCCTTatgtttgaacttttttttctt
aaacATGATAATTCCGAAATAATTAAAATCCTTGATTAAAAGGAGTTTGC
TTTCCACAAAtgaagaaagaaagttcttcATGAGCAAAAGGAAGAACAGA
AGAGTAACTTTGTGCTGTTCAAAAGATGCGTTGCTACCTTATCCTGTTTT
TGACAGCGGCATCTCTTCTCACTTGCACGCTTGGTTATCGATTCCAAGCC
CGACAAAACTATCCTCAAAACCATGATAGCGAGAATATTGAAAGAAAGGG
AGAAAACAATGCGAAAGAAGACGacgaaattttgataaaaagacaagttt
tcaaaattcatagGGGTATTAATAACTTAAGAAAAACCAGTTGCTTTAAA
AACACTAAGTCCACCAAGAAATGCAACTTCTTGTTTGTTAATGGTGCAGT
GAAATATGTTTGTCGAAATGTTATACCATCTACTATTTGTAACTAAAGTA
TCTAAATAAGTTTGTGTTTAATTTTCACAATGACAAAGTTTA Coding sequence (CDS) from alignment at scaffold_14:564735..566676 >TCONS_00048090 ID=TCONS_00048090|Name=TCONS_00048090|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_14:564735..566676 (Clytia hemisphaerica)
gattttctgttgttttttttacagtACCAGAGCACAGCTATGTTTGTGTA
CTTCAAAATACtcttatttttgagctttttgaaatatctttcgAATTATG
AAATAGCAGCAACCTATATCAGAGAAAATGAAGACAAGGAAAACTTCCGA
GAGAATGATTTTTCTAAGAGTTTTGATAATCCAAAGTTGGTTTTATTGGA
TAACTTTCATCATCCTGAGCATAGAACTCAAAGCAAGGGAAAGGATAATG
ATATGCAAACTTTGTTGGAAGACGATAGTGCTGGCTCTGAAAATGGATAC
AGCTTGGACGAATCGAAAGTTCAACATTTAGAATCAATGAAAGATGCTGA
CTTTGATGAAGAAGAGTACGAGAGACTCGACGAGGATTGGATTCAAAAAG
TAGCTGCTGATGAAAAACGAAAACGTAAGCGGAATAGAAGACGGAGAAGA
AGGAGGAGACGTCGACGTACTCTGATTTCTTTGCCGGTACGTTCACCTCC
AACGTGTGTTGAAACTGATACCCAAATTTGTCGGTGGCTTCTTGTGAATG
GCGAGCTCAAATTTGTTTGTGAACGAGTGCCTACCATTACTTGTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048090-exon-scaffold_14-1491911889:564735..566676 | TCONS_00048090-exon-scaffold_14-1491911889:564735..566676 | Clytia hemisphaerica | exon |
| TCONS_00048090-exon-scaffold_14-1510915933:564735..566676 | TCONS_00048090-exon-scaffold_14-1510915933:564735..566676 | Clytia hemisphaerica | exon |
| TCONS_00048090-exon-scaffold_14-1575043694:564735..566676 | TCONS_00048090-exon-scaffold_14-1575043694:564735..566676 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:564735..566676 . |
Blast
The following BLAST results are available for this feature:
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