TCONS_00048092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048092
Unique NameTCONS_00048092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048092 ID=TCONS_00048092|Name=TCONS_00048092|organism=Clytia hemisphaerica|type=transcript|length=635bp
TTGCATTTTCAACAGGTTTTCTTTTATAACATATATACAATATAAGTTAA
TATATTTACAAGCTGCTAGAAATAAATACAAGGAAGGATATTAACGGTAA
GAaaactttaaataaaataaagtatATACAATTGTCAAATTTACTTAATC
AATTTTAGTCTGTTAATTGCACACTATTTCAGGGATCATTTCACATATAG
TTTTGAGAGCACCATTAACGAATTTGACTGTACATTCCTTGTTTTTTTTG
CCAGTAGGAAAGCAAGATGTTCCTCTGCTCAAAGTAGTGATACCATTATC
TTTCACTATACTAACATCTTTCAGATTGTTGAGAAAAGCAATGAGCTTAT
CACCGAGTTCTTTTGTGTGTGCTTTGCTGTGTTGTGGCGATCTCCTTGAT
ATCCTGTGGTCATTGAATCTTGGATAACattcaataaaggataaaaACGT
TACCAAAAGAAGAAACATTACGATTGATGATCTAGAAGCCATATCTGACA
GAATTTTCAGTTGATTTCCTCTCTCAATGTCTTGACTTAAACATGAAAGT
TTATAGTATGAGCGTATGGTTAAAAATTCCCCTTCTTTTATAGGTACCAA
TCATGGTCAGATTTCTCTTAAGAAGATAATCTTTC
Run BLAST on NCBI

protein sequence of TCONS_00048092-protein

>TCONS_00048092-protein ID=TCONS_00048092-protein|Name=TCONS_00048092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MASRSSIVMFLLLVTFLSFIECYPRFNDHRISRRSPQHSKAHTKELGDKL
IAFLNNLKDVSIVKDNGITTLSRGTSCFPTGKKNKECTVKFVNGALKTIC
EMIPEIVCN
Run BLAST on NCBI

transcript from alignment at scaffold_14:568643..569277

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048092 ID=TCONS_00048092|Name=TCONS_00048092|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_14:568643..569277 (Clytia hemisphaerica)
GAAAGATTATCTTCTTAAGAGAAATCTGACCATGATTGGTACCTATAAAA
GAAGGGGAATTTTTAACCATACGCTCATACTATAAACTTTCATGTTTAAG
TCAAGACATTGAGAGAGGAAATCAACTGAAAATTCTGTCAGATATGGCTT
CTAGATCATCAATCGTAATGTTTCTTCTTTTGGTAACGTttttatccttt
attgaatGTTATCCAAGATTCAATGACCACAGGATATCAAGGAGATCGCC
ACAACACAGCAAAGCACACACAAAAGAACTCGGTGATAAGCTCATTGCTT
TTCTCAACAATCTGAAAGATGTTAGTATAGTGAAAGATAATGGTATCACT
ACTTTGAGCAGAGGAACATCTTGCTTTCCTACTGGCAAAAAAAACAAGGA
ATGTACAGTCAAATTCGTTAATGGTGCTCTCAAAACTATATGTGAAATGA
TCCCTGAAATAGTGTGCAATTAACAGACTAAAATTGATTAAGTAAATTTG
ACAATTGTATatactttattttatttaaagtttTCTTACCGTTAATATCC
TTCCTTGTATTTATTTCTAGCAGCTTGTAAATATATTAACTTATATTGTA
TATATGTTATAAAAGAAAACCTGTTGAAAATGCAA

Coding sequence (CDS) from alignment at scaffold_14:568643..569277

>TCONS_00048092 ID=TCONS_00048092|Name=TCONS_00048092|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_14:568643..569277 (Clytia hemisphaerica)
ATGGCTTCTAGATCATCAATCGTAATGTTTCTTCTTTTGGTAACGTtttt
atcctttattgaatGTTATCCAAGATTCAATGACCACAGGATATCAAGGA
GATCGCCACAACACAGCAAAGCACACACAAAAGAACTCGGTGATAAGCTC
ATTGCTTTTCTCAACAATCTGAAAGATGTTAGTATAGTGAAAGATAATGG
TATCACTACTTTGAGCAGAGGAACATCTTGCTTTCCTACTGGCAAAAAAA
ACAAGGAATGTACAGTCAAATTCGTTAATGGTGCTCTCAAAACTATATGT
GAAATGATCCCTGAAATAGTGTGCAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030615XLOC_030615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048092-proteinTCONS_00048092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048092-exon-scaffold_14-1491911889:568643..569277TCONS_00048092-exon-scaffold_14-1491911889:568643..569277Clytia hemisphaericaexon
TCONS_00048092-exon-scaffold_14-1510915933:568643..569277TCONS_00048092-exon-scaffold_14-1510915933:568643..569277Clytia hemisphaericaexon
TCONS_00048092-exon-scaffold_14-1575043694:568643..569277TCONS_00048092-exon-scaffold_14-1575043694:568643..569277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:568643..569277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.107071	0.300716	0.912332	5.47649	1.85625	0.443718	1.60624	1.09289	0.189159	0.405993	0.125038	0.0640798	0.265589	0.463199	1.44938	0.942606	0.190977	0.60769	0.715322	1.43642	1.14195	0.974975	1.47897	0.188354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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