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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048007 ID=TCONS_00048007|Name=TCONS_00048007|organism=Clytia hemisphaerica|type=transcript|length=3296bp
TGCAAAAATCAGAACACAGAAGTTAAATTTAGGTTAATCTGGTGAAACCC
CGGCCTGCGGGGATGATAGGTTTCCGAGGTGACAGCTTATGTCTGAGGTT
CAAATGTCGACCTTTTGAGAggctgaatttcgaaaattttgatcctgatt
tttttatgaccattttttccaatttacaGCCAAAATTTCCAAGTTTTGAT
TAAAATTAGGGGAATTTATGACCGCATGCATGATGGGAGTATATGAGTGA
CTTTGTGATTTtaggaccctttcagagactttcGACACGGTGTAAATACt
gcaataaaattttcaaaattttatataaaagggtttaaaaaattAGTTAC
AAACAATTAAAGATTTGATATCTTGACAAAGGTATTTAATCACGCCCTCA
ACCATGACATATTTGCactcttttgtctttttgttgGGAATGCAACTAAT
TTTGCGCAAAGTGTTCCTTGAGAACTTCATCAAAAAGTATCGTTGCTGTT
CCTTTGGGATTGTTTTGTCATACATTCTCTGCGACGGTCGTTGTTCAATT
CTATTACAGTTCGTGTTGTGTGCAAGGAGACTAAAGATGCAAAACAACCA
AAAGAGCTGTAACTTTCTAAACCCCATCTTTCAAACGTCAAGatcttctt
ttgaaaaagtgtcTCTTGCACTGTGTCATATACTATAGCCTCTGGTTTAA
GTACAAATAAATATTGTTATGACTTTGAGGAAAGAAAAAAGTCTAGGCAC
TTCTATAATCGCTTCTAGATTAGCTTCCATTCAATaatgttatgtttttt
ttagCCATCTGCATACCTCGCTGATCTCAGTTATTAAATCCGAGTTtcct
tcaaatattttttttccgttTTTGATTTATAAGTTCTAGATTTATCACTG
TAATGTACCCCTGCTTTAAAGCGAGAAGCCTTGTTGGATAGCTAAAAGAC
AGAAGCTTCAAAATTCCGCCGGATCTATATACATGTTCATCGACGAAGGC
TGTTACAAGTGATGGTAGACACTAGTCCACAAACATATTTGAACTCGCCA
TTCACAAGAAGCCACCGACAAACTTGACCGTTGGATCCAACACACGGTGC
AGGTAAACGTACCGGCAAAGAAGTCAGAGTACGTCGACGTCTCctccttc
ttctccttctccttaTTCTTCGTTCTCCATCAGCAGCTACTTTTTGAATC
CAATCCTCGTCTAGTCTCTCGTACTCTTCTTCATCAGAGTCATCATCTTT
CATTGTTTCTAAATGTTGAACTTTCGATTTGTCCAAGTTGTATCCATTTT
GAGAACCAACACTAACATAGTCGTCTGCTTTGTttggatttttgtcaatt
tttttgtttctgtttgTCGTATGATGTTCAAGATGACCAATGCTGTCCGA
TAAGATCAACTTTGGATTATTAAAACTCTTCTCTTCATCAAAGAAATCAT
TCTCTCGGAAGTCTTCCTTGTCTTCATTCTCTCTGGTATAGGTTGCTGCT
ATTTTAAAATTCGAAAGATATTtcgaaaagctcaaaaataagaGCAATCT
GAAGTACAAGAACATGATTGTGTTTTATGCTTCCCAAATATAAGATATTT
TTGAAATGACAAAGAATCACATCCGTTCAAGGAACAACCTAAGATAAAAA
TGGATCTgttgaaaatgggaaaaagatttttgagttCATTACCCCGCACT
AATTGTTGCAATATTATTTTCCTTCTTTAATTAAGTGATATAAATTAGAT
CAAATAGATATGATGACTTCCCTGTAAAAAGCAAAAATGTCTCATTTGAG
CACTCAAATAGATGGACCACCCTTACAGTTTTTGAAATTAACGTCTATCT
ATCAACATTTCATAAGCcgaaaatttggaaacattgcAAACGCACGCGTG
CTTGGAAATAAGGTtccttttcccaaatctctgataGAACTAACGTTTGG
TTCAAATTGAAATGTTGATCTTATAACAGATTAGTAGAGGGCCAAGCCTT
gggtcccgtgacatcttttctacgacatagccatttttagtctattccaa
agaacaatatattacaagatatttttgagagggaggacgcggattaggcc
cgggaaaacttttttgacaaaaatagtgacgccataggcaaaatactctg
taccagagtgtatctcacgattatcgtagcgtacgacaatgaattttgaa
attagccgtagatatcgggtttgtgtacagacaataggcaaaactgcaag
ggaaataaggggtagagaaatagctgattttcaaaagtcaaaataaacga
aaatgattaccatctgaaagagcatgaaattctgagcaaaaaaatgcatt
ACAACAACTAACTATAACTATTGTATATCTCTTGGCCCAAATATATTGTA
TTatattaagaaaataaataaaaagtcactgtaaaaaaaaaaaattacaa
tgttCAAAAACCGACGTCAGTACGACCAAGACaagattttgacgtcaaat
cacagtagagctgacagttagttggtctaCGCATACTACGCTCTGCTCTA
AAGTGATGTGGCGAATGTGAGGATCTGATCTGGGTTGCTCAGCCCACGAG
GATCTGCACccggattaatcggattcaagattttctgttttattctactt
ttgaaaaaatgactgCGAGAATAAataatctatttttcttttacagTATG
TGACCCCAAAACTTCTCTCAGATCTAGAGGAAAGAAGGATGTACAAAAGT
TTTTGCTGGatgcaaaactttaacatctctactttatttttcgaaagttC
TTGTTTAAAATGCCCGTACGTAAACCTCGGTGAAGAagcatgatttataa
atagcaacagaTATCTCGTCGtgcgtctcccctctctcactcGCACTCCA
TCGTAGGCAGTTggtttgagaaatttcaaatgaaaaaaacaaagacaacg
ACTAAAGACCCTCTACGACAACCTCGTGCCCGtctatcccaggctttatt
tgcACTACTGATGGACACCAGAAAGTTATTATTATTCCTTaactttcatt
aaagtgccaccgcaccaaaacgaacacatagagttgaatgcTTTGAAAAG
GAACGGTATTAGCCCTATAGTAACTTTTGACTTCTCATctgatctgagac
aaaattcagtTTTCAGACGCTAACAAATTTGTCAAGGGAGTTTTTGCTAA
TTGGGAGTTAATGTTATTTTACTCATGTATACGTTTGTTTAAACTACgca
gagcgcttaataactacttgtagtataaaattgttttacaACAGTC Run BLAST on NCBI protein sequence of TCONS_00048007-protein >TCONS_00048007-protein ID=TCONS_00048007-protein|Name=TCONS_00048007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MFLYFRLLLFLSFSKYLSNFKIAATYTRENEDKEDFRENDFFDEEKSFNN
PKLILSDSIGHLEHHTTNRNKKIDKNPNKADDYVSVGSQNGYNLDKSKVQ
HLETMKDDDSDEEEYERLDEDWIQKVAADGERRIRRRRRRRRRRRTLTSL
PVRLPAPCVGSNGQVCRWLLVNGEFKYVCGLVSTITCNSLRR Run BLAST on NCBI transcript from alignment at scaffold_14:595175..598470+ Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048007 ID=TCONS_00048007|Name=TCONS_00048007|organism=Clytia hemisphaerica|type=transcript|length=3296bp|location=Sequence derived from alignment at scaffold_14:595175..598470+ (Clytia hemisphaerica)
TGCAAAAATCAGAACACAGAAGTTAAATTTAGGTTAATCTGGTGAAACCC
CGGCCTGCGGGGATGATAGGTTTCCGAGGTGACAGCTTATGTCTGAGGTT
CAAATGTCGACCTTTTGAGAggctgaatttcgaaaattttgatcctgatt
tttttatgaccattttttccaatttacaGCCAAAATTTCCAAGTTTTGAT
TAAAATTAGGGGAATTTATGACCGCATGCATGATGGGAGTATATGAGTGA
CTTTGTGATTTtaggaccctttcagagactttcGACACGGTGTAAATACt
gcaataaaattttcaaaattttatataaaagggtttaaaaaattAGTTAC
AAACAATTAAAGATTTGATATCTTGACAAAGGTATTTAATCACGCCCTCA
ACCATGACATATTTGCactcttttgtctttttgttgGGAATGCAACTAAT
TTTGCGCAAAGTGTTCCTTGAGAACTTCATCAAAAAGTATCGTTGCTGTT
CCTTTGGGATTGTTTTGTCATACATTCTCTGCGACGGTCGTTGTTCAATT
CTATTACAGTTCGTGTTGTGTGCAAGGAGACTAAAGATGCAAAACAACCA
AAAGAGCTGTAACTTTCTAAACCCCATCTTTCAAACGTCAAGatcttctt
ttgaaaaagtgtcTCTTGCACTGTGTCATATACTATAGCCTCTGGTTTAA
GTACAAATAAATATTGTTATGACTTTGAGGAAAGAAAAAAGTCTAGGCAC
TTCTATAATCGCTTCTAGATTAGCTTCCATTCAATaatgttatgtttttt
ttagCCATCTGCATACCTCGCTGATCTCAGTTATTAAATCCGAGTTtcct
tcaaatattttttttccgttTTTGATTTATAAGTTCTAGATTTATCACTG
TAATGTACCCCTGCTTTAAAGCGAGAAGCCTTGTTGGATAGCTAAAAGAC
AGAAGCTTCAAAATTCCGCCGGATCTATATACATGTTCATCGACGAAGGC
TGTTACAAGTGATGGTAGACACTAGTCCACAAACATATTTGAACTCGCCA
TTCACAAGAAGCCACCGACAAACTTGACCGTTGGATCCAACACACGGTGC
AGGTAAACGTACCGGCAAAGAAGTCAGAGTACGTCGACGTCTCctccttc
ttctccttctccttaTTCTTCGTTCTCCATCAGCAGCTACTTTTTGAATC
CAATCCTCGTCTAGTCTCTCGTACTCTTCTTCATCAGAGTCATCATCTTT
CATTGTTTCTAAATGTTGAACTTTCGATTTGTCCAAGTTGTATCCATTTT
GAGAACCAACACTAACATAGTCGTCTGCTTTGTttggatttttgtcaatt
tttttgtttctgtttgTCGTATGATGTTCAAGATGACCAATGCTGTCCGA
TAAGATCAACTTTGGATTATTAAAACTCTTCTCTTCATCAAAGAAATCAT
TCTCTCGGAAGTCTTCCTTGTCTTCATTCTCTCTGGTATAGGTTGCTGCT
ATTTTAAAATTCGAAAGATATTtcgaaaagctcaaaaataagaGCAATCT
GAAGTACAAGAACATGATTGTGTTTTATGCTTCCCAAATATAAGATATTT
TTGAAATGACAAAGAATCACATCCGTTCAAGGAACAACCTAAGATAAAAA
TGGATCTgttgaaaatgggaaaaagatttttgagttCATTACCCCGCACT
AATTGTTGCAATATTATTTTCCTTCTTTAATTAAGTGATATAAATTAGAT
CAAATAGATATGATGACTTCCCTGTAAAAAGCAAAAATGTCTCATTTGAG
CACTCAAATAGATGGACCACCCTTACAGTTTTTGAAATTAACGTCTATCT
ATCAACATTTCATAAGCcgaaaatttggaaacattgcAAACGCACGCGTG
CTTGGAAATAAGGTtccttttcccaaatctctgataGAACTAACGTTTGG
TTCAAATTGAAATGTTGATCTTATAACAGATTAGTAGAGGGCCAAGCCTT
gggtcccgtgacatcttttctacgacatagccatttttagtctattccaa
agaacaatatattacaagatatttttgagagggaggacgcggattaggcc
cgggaaaacttttttgacaaaaatagtgacgccataggcaaaatactctg
taccagagtgtatctcacgattatcgtagcgtacgacaatgaattttgaa
attagccgtagatatcgggtttgtgtacagacaataggcaaaactgcaag
ggaaataaggggtagagaaatagctgattttcaaaagtcaaaataaacga
aaatgattaccatctgaaagagcatgaaattctgagcaaaaaaatgcatt
ACAACAACTAACTATAACTATTGTATATCTCTTGGCCCAAATATATTGTA
TTatattaagaaaataaataaaaagtcactgtaaaaaaaaaaaattacaa
tgttCAAAAACCGACGTCAGTACGACCAAGACaagattttgacgtcaaat
cacagtagagctgacagttagttggtctaCGCATACTACGCTCTGCTCTA
AAGTGATGTGGCGAATGTGAGGATCTGATCTGGGTTGCTCAGCCCACGAG
GATCTGCACccggattaatcggattcaagattttctgttttattctactt
ttgaaaaaatgactgCGAGAATAAataatctatttttcttttacagTATG
TGACCCCAAAACTTCTCTCAGATCTAGAGGAAAGAAGGATGTACAAAAGT
TTTTGCTGGatgcaaaactttaacatctctactttatttttcgaaagttC
TTGTTTAAAATGCCCGTACGTAAACCTCGGTGAAGAagcatgatttataa
atagcaacagaTATCTCGTCGtgcgtctcccctctctcactcGCACTCCA
TCGTAGGCAGTTggtttgagaaatttcaaatgaaaaaaacaaagacaacg
ACTAAAGACCCTCTACGACAACCTCGTGCCCGtctatcccaggctttatt
tgcACTACTGATGGACACCAGAAAGTTATTATTATTCCTTaactttcatt
aaagtgccaccgcaccaaaacgaacacatagagttgaatgcTTTGAAAAG
GAACGGTATTAGCCCTATAGTAACTTTTGACTTCTCATctgatctgagac
aaaattcagtTTTCAGACGCTAACAAATTTGTCAAGGGAGTTTTTGCTAA
TTGGGAGTTAATGTTATTTTACTCATGTATACGTTTGTTTAAACTACgca
gagcgcttaataactacttgtagtataaaattgttttacaACAGTC Coding sequence (CDS) from alignment at scaffold_14:595175..598470+ >TCONS_00048007 ID=TCONS_00048007|Name=TCONS_00048007|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_14:595175..598470+ (Clytia hemisphaerica)
TCATCGACGAAGGCTGTTACAAGTGATGGTAGACACTAGTCCACAAACAT
ATTTGAACTCGCCATTCACAAGAAGCCACCGACAAACTTGACCGTTGGAT
CCAACACACGGTGCAGGTAAACGTACCGGCAAAGAAGTCAGAGTACGTCG
ACGTCTCctccttcttctccttctccttaTTCTTCGTTCTCCATCAGCAG
CTACTTTTTGAATCCAATCCTCGTCTAGTCTCTCGTACTCTTCTTCATCA
GAGTCATCATCTTTCATTGTTTCTAAATGTTGAACTTTCGATTTGTCCAA
GTTGTATCCATTTTGAGAACCAACACTAACATAGTCGTCTGCTTTGTttg
gatttttgtcaatttttttgtttctgtttgTCGTATGATGTTCAAGATGA
CCAATGCTGTCCGATAAGATCAACTTTGGATTATTAAAACTCTTCTCTTC
ATCAAAGAAATCATTCTCTCGGAAGTCTTCCTTGTCTTCATTCTCTCTGG
TATAGGTTGCTGCTATTTTAAAATTCGAAAGATATTtcgaaaagctcaaa
aataagaGCAATCTGAAGTACAAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048007-exon-scaffold_14-1491911889:595175..598470 | TCONS_00048007-exon-scaffold_14-1491911889:595175..598470 | Clytia hemisphaerica | exon |
| TCONS_00048007-exon-scaffold_14-1510915933:595175..598470 | TCONS_00048007-exon-scaffold_14-1510915933:595175..598470 | Clytia hemisphaerica | exon |
| TCONS_00048007-exon-scaffold_14-1575043694:595175..598470 | TCONS_00048007-exon-scaffold_14-1575043694:595175..598470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_14 | supercontig | scaffold_14:595175..598470 + |
Blast
The following BLAST results are available for this feature:
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