TCONS_00048042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048042
Unique NameTCONS_00048042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048042 ID=TCONS_00048042|Name=TCONS_00048042|organism=Clytia hemisphaerica|type=transcript|length=251bp
CagaatcttttttaattttaaaaggaTGCTGTACTTGATCTAGAATTCAT
ACATCTTTGGATGTCAATAAGCCATGGTCCCAAAATCTGTCCTTTCCGCA
ACGCTAAACATTTGTACgcaatttttttccatgggGTGTAGGGGCTTGAA
TTCTTTATTCAGTTTGCTagcattcttataaagaaattatttttataagt
ttggTTTCTGAATGTTGTGTTGTCCACAAGTAATCAAGGTTCAAACATGa
t
Run BLAST on NCBI

transcript from alignment at scaffold_14:607202..607582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048042 ID=TCONS_00048042|Name=TCONS_00048042|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_14:607202..607582- (Clytia hemisphaerica)
CAGAATCTTTTTTAATTTTAAAAGGATGCTGTACTTGATCTAGAATTCAT
ACATCTTTGGATGTCAATAAGCCATGGTCCCAAAATCTGTCCTTTCCGCA
ACGCTAAACATTTGTACGCAATTTTTTTCCATGGGGTGTAGGGGCTTGAA
TTCTTTATTCAGTTTGCTAGCATTCTTATAAAGAAATTATTTTTATAAGT
TTGGTTTCTGAATGTTGTGTTGTCCACAAGTAATCAAGGTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCACAAGTAATCAAGGTTCAAACATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030569XLOC_030569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048042-exon-scaffold_14-1575043694:607345..607582TCONS_00048042-exon-scaffold_14-1575043694:607345..607582Clytia hemisphaericaexon
TCONS_00048042-exon-scaffold_14-1575043694:607202..607214TCONS_00048042-exon-scaffold_14-1575043694:607202..607214Clytia hemisphaericaexon
TCONS_00048042-exon-scaffold_14-1510915933:607345..607582TCONS_00048042-exon-scaffold_14-1510915933:607345..607582Clytia hemisphaericaexon
TCONS_00048042-exon-scaffold_14-1510915933:607202..607214TCONS_00048042-exon-scaffold_14-1510915933:607202..607214Clytia hemisphaericaexon
TCONS_00048042-exon-scaffold_14-1491911889:607345..607582TCONS_00048042-exon-scaffold_14-1491911889:607345..607582Clytia hemisphaericaexon
TCONS_00048042-exon-scaffold_14-1491911889:607202..607214TCONS_00048042-exon-scaffold_14-1491911889:607202..607214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:607202..607582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26383	4.41519	0.854409	3.34362	2.03527	7.23734	4.85086	3.63305	3.81538	0.78766	2.29357	2.51283	3.01121	5.73314	1.71397	1.83935	5.09835	1.74188	2.4065	5.03647	1.4592	1.06762	0.865222	2.35984	6.48154	4.33846	3.10416	0	1.67512	0.853341
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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