TCONS_00048044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048044
Unique NameTCONS_00048044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048044 ID=TCONS_00048044|Name=TCONS_00048044|organism=Clytia hemisphaerica|type=transcript|length=2275bp
cgacttgaatcatgatacattactcacatttcactggatgcattttcgct
gtgaaattatccgcaaaattttctgaccgcgttctgagacggaggctaat
taaaGACTTTTTATATTCCTTTTCTTAATCAAGAATATTTTATCGACTTT
ATCTCACACTTTCTCTTTTTATTAGTTTATATTATGGACACACTCACCTT
TAAATTCTTTCTTGCTTTACTTCTGTAAAAAATTCAAGCAAATAAGTCCA
TGgactttttagaatttagaatTTATTGATTGAGTTAATTGGCAAAGAAT
CGTGGTTTCACATACCACTGAAGTTGGAGTTTAATTATAATTAGAAAAGA
CTTAGAAAGTGTGGTCAAAAATGGGCAGTTGATTAATAAATATGCCTccg
tttttttgaattttcaaaattccaaatTGTTGTAGACATTCGAAAAAGGT
GATTTAAACCAGCAGATTTGACAATATTGATGATAAAAATTTAGTTGATT
tattacaagtttgtttttgcGGACATAAAATGGCCGGCGAAGAATCAGGT
GGTTatgaatttaaaacaaaagggaAATTACCAACAAGCTGTCAGTGTTT
GATTTGCCAAGAGTTGATAAGACAATGTGTTGAACTTCCCTGCCGTCATC
CATTTTGTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAACGAAAAGAG
AGGAAAGGCCTTGAGCAAGAGAGAACCTTCAGGTGTATGCTTTGTAATCA
AGAATATAAAATTCAAGAAaagaaaaagaacaCAGTCGTAGACAACATTA
TCACTGAAGATATAGAAGTTTTGTGCAAATACCATGAGCAAGGATGTCCG
TGGACTGGTGCTATCAACGATTTTATGCAACACGCCAACACAGATTGTCC
ATACGTCGAAATAACGTGTCATTTTACGGGATGTGACGTACGCTTTTTAC
GTAAAGCGAAACAACAACACGAACAAGATTGTCCAATGAAAGAGATGAAC
TGCGTTTACTGTCAAATGGCTTTTAAAGAAAGTGATGAACAGGTTTCTGG
TCATCAAAACACAGAATGTCTTTTTCAGACAATTAAatgtgaatttgaaa
attttggttgcAATGTTCAGGTTCTTCAAAAAGACCATGACGATCACAAA
GCAATGAACAGTCAACACCATCTCCGATTTGTCCTCCACAAATATAACGA
ATCGAAAGAAGAGTTAAACTCGATAAAAAATGAGTTATATATCGCTAAAA
ACGAGTTAACTTCATTGAAAGACAGATTGACTGATTTTCAGATCGTGCAA
GATGAATCGAATGAGAGAATCGATTTTTTGGAGGAAGAGCTACGGAAATC
AAGGAATGAAAACGTGAAAACACTCGAACTCTTCCAAATGGTTTCGAACA
CAGTTCAATTACGCAGCCTTAATTTGAAATCATGTGAagatctttttcat
tcaattagcgaaaaaaaatttgaagaagaagaatttaTGCAAGTCGAGCC
AATAAAAGCCGATGACAAAGTATATAATTTTGACGGTTTCAACGAATTAT
ACAAACTTTTCCCGAAATCAAATTTACCTGTTTACAAAAAGCGAATGGAC
AATTTGTtcaagaaaatggaaaaagggAAACTTTATTTccatcaacaaaa
cattttcgtCAAACTCTCACCATTTCCTNGAAACTTTATTTccatcaaca
aaacattttcgtCAAACTTTCACCATTTCCCCGTAACAATAGTGAACAAC
TTTTCGTCTACCATGTCACAGAcatcaacatttttcgaaaCGATCCAATA
CGACGCACCGTCTTCGCCAACGACAACTTCATCTTGATAGTTGATATTCG
ATCATTATATCATCTTTCCATGCAAATCACGAATTTCAATGAAGAGAATT
CCGAACTCTTCCTCGTCAGCCGTAAAAACCAGCAAAAGTTTTTGTTGAAA
TATGGTTACTATAACAACTATTTCAATTGGAATGATTTCAAAAACGAGAA
GAATGAGGTCATTTTCTATttgaagaaaaagtgaaaataaaaatttttgt
tgatttctggtttacactttttttatctgCTTTTCCGCTTGAGATAAATA
TCTTCTCAAAAGGAAGATTCTGTTCCAATGTGATTCCATAAACGAATAGA
ACGAGAACATtgcagaaaaaaatgaaaatgaaacactTGAAAATTTCGAT
GGAATACGAACGAATCCAAAGATGAATTTGTTTGGGAAGAAAGAGACTTT
CTGATACCATTCGAATCGATTCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_14:658066..664293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048044 ID=TCONS_00048044|Name=TCONS_00048044|organism=Clytia hemisphaerica|type=transcript|length=6228bp|location=Sequence derived from alignment at scaffold_14:658066..664293- (Clytia hemisphaerica)
CGACTTGAATCATGATACATTACTCACATTTCACTGGATGCATTTTCGCT
GTGAAATTATCCGCAAAATTTTCTGACCGCGTTCTGAGACGGAGGCTAAT
TAAAGACTTTTTATATTCCTTTTCTTAATCAAGAATATTTTATCGACTTT
ATCTCACACTTTCTCTTTTTATTAGTTTATATTATGGACACACTCACCTT
TAAATTCTTTCTTGCTTTACTTCTGTAAAAAATTCAAGCAAATAAGTCCA
TGGACTTTTTAGAATTTAGAATTTATTGATTGAGTTAATTGGCAAAGAAT
CGTGGTTTCACATACCACTGAAGTTGGAGTTTAATTATAATTAGAAAAGA
CTTAGAAAGTGTGGTCAAAAATGGGCAGTTGATTAATAAATATGCCTCCG
TTTTTTTGAATTTTCAAAATTCCAAATTGTTGTAGACATTCGAAAAAGGT
GATTTAAACCAGCAGATTTGACAATATTGATGATAAAAATTTAGTTGATT
TATTACAAGTTTGTTTTTGCGGACATAAAATGGCCGGCGAAGAATCAGGT
GGTTATGAATTTAAAACAAAAGGGAAATTACCAACAAGCTGTCAGTGTTT
GATTTGCCAAGAGTTGATAAGACAATGTGTTGAACTTCCCTGCCGTCATC
CATTTTGTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAACGAAAAGAG
AGGAAAGGCCTTGAGCAGTATGTTTTATCTTTTTTATTCATAACAATTTT
TAAAGGTTTCATGTCTTTAGGGGGGGTGTTCTATATTGAGAGGGTGCCAA
AAATATATTGACTGGTTAGGAGGGGGGGCTTGAAATCTTTCTCAGGATAT
CAACAGAGTGGAAATTCTTTTGACATTTTTGTAAATTTCTCCCCCCCCAA
CCCTAGTACATACTTTCTGACCACTCCCTAACAGTTTCCTCAAAAATAAA
CGTTCCAATCTGCTTTTCCTTTTACAGAGAGAGAACCTTCAGGTGTATGC
TTTGTAATCAAGAATATAAAATTCAAGAAGTAAGTCACTCTTTCGTATGG
TTTCTTATTAGTTTCCATCAATGATTAAATAGTTTTTCCTAAGACCTTCC
CAATTATCGTCTATTTTGTATCGGAAATTTGCACTCTCAATCCCTTACTC
TAGCTCGCCTTAATTTCTAATTTTCAGTGCAAAAAAACACTTCTAAAACA
TTCACTGTGTCAGGGGCTTGGGAGTCTCCCCTACCCACTGAAAGATTTGG
CTAAAACTTCGTTTCCGGTGAGGGAAACTTTGTTTTCATCCTCATTTGAA
ATTTAATGGAAATAAAGCATCCCGCTAGGTTTTTTGACCTGGGAACAATA
ACATTTCCATTTCCATCGGGATTTCGATACGGTATTGAAATTAAATGAAA
TATAACTTTTTATTGCATCTGGTTTATTTAACAGAAGAAAAAGAACACAG
TCGTAGACAACATTATCACTGAAGATATAGAAGTTTTGTGCAAATACCAT
GAGCAAGGATGTCCGTGGACTGGTGCTATCAACGATTTTATGGTATATGG
TTCCAATGGTCCGATTTAATTCCTTGGAATATTTTGACAGTCTTTAAAAA
ATTTAGGGAAACTGAACATATGCTTTTTTCACATACCCGTAAAATCTTAC
TTAAAACCACTTAGATTTGTTATTGTTTGGGGAAATTCCCAAAAGACAGC
CTTTTGAACGATTTTCCGTAAGGTAAAACTTTACGTACATGTCAAAAAAG
CTTGAATAAAATTTTAAGATCAGCAACTTGTTTTATTGAAAGATATATTG
TCTTCGTTTTATGTAATCAAATCTTTTTTCAACAGCAACACGCCAACACA
GATTGTCCATACGTCGAAATAACGTGTCATTTTACGGGATGTGACGTACG
CTTTTTACGTAAAGCGAAACAACAACACGAACAAGATTGTCCAATGAAAG
AGATGAACTGCGTTTACTGTCAAATGGCTTTTAAAGAAAGTGATGAACAG
GTAAAATTGCTTTTCTTTAAATATTACAATAAAAAGCAACAATGGCAGTA
ATCTTGGATAAATTCCGAACTAAATCACAACTAGTAAACTTAGAAAATAT
CCGATGAAACCAATTTCAGTTTTACTCATAAGTCCCAGAATTTTTTTAGA
AAACCTGATACAGTAAGAAACGATATAATCTGCATAAGTGTAACTTCTTC
GATCCTGAGAATGTCAATGTGGTTGAAAGCTACGCGAGTCTTTCTGTCCT
CAGAGGTTAAATGTCATACAAAGTTAAACTTTCATGCTTATGGTCAATAG
ACGACATTCTGCGATGTAGAAGACATGTTCAAATCCCCTGTTAACGTGTT
TATCAAGCATAAGATCTGTAGAACTTTACTGTGAAAAACAATAAATTTAG
CACGTGGGGAGAAATTCACGTAGTCCTCTGAGCTTTACACACAATCATTT
GTTTAACGAAAAGCTGGTAAAAACCCCTGNGTGTTTATCAAGCATAAGAT
CTGTAGAACTTTACTGTGAAAAACAATAAATTTAGCACGTGGGGAGAAAT
TCACGTAGTCCTCTGAGCTTTACACACAATCATTTGTTTAATGAAAAGCT
GGTAAAAACCCCTACCATATTTTGATAGAACAATGTATACTATTTTTTGA
AAAAATTCAAAACCCCGTCTTTATAAAAAAATGGTTCCCGCTAAATCTTT
ACGACGATTTTTAGTCACGTGACTGAAGTGCTTGATAAGAGATCGGGTGA
GCCCTGGGTTCGAGGGCGGCCTAAAATTAGGTCTAAAATCTGGATAGAAA
AGTACAAACTTTCGGGAAGAACTTCCAAATCTTTATCGTTTTTGAATGGT
AAATGTGTTATAAATATATTTCCGCGATGTCATAAATCTAAAATCTAAAT
TCTAGAATCATTATCGACAATGTTTAAAATATCCAACGAAATGTCCAAAT
CAAGGATGCGAAATAGTCTTTCCAAAGAATGAGGTATTTGAATTTAGGCT
GCCAGCATCCTGTTGATCTGTTTTGCTATAAGCGATGCAAATCGTCCTCA
AAAATCATGTGTGCTTAGCTTAGTTTCTTTTTCTTTAGTTTTGAGTGAAA
CCATAGTCATCATATAAAAAAACTGGTCTGGCAATGTATTGTTTTAGCTT
TTTGTTCAATTTTCTTTTGTTACAAACAAAACACAAGTTGCGGTTTGCCT
ACCTTTTTGATCACATTACCAAAACCTCCTCTTGGGATTGGTCTATTTTC
TATTCACATGATCAAAAAGGTTGTAAAATAAATCGATTTTGGTACCATCT
TTTAACAATAAAAAGAGACAAAAGCCTTCAAAACTAGTGTTTTTATCAAA
ATTTTGTAAAGTTTCTGCCTTCATAGCCAAATGTTTTTGTTATTTTCTTT
CAGGTTTCTGGTCATCAAAACACAGAATGTCTTTTTCAGACAATTAAATG
TGAATTTGAAAATTTTGGTTGCAATGTTCAGGTATTAACTCTTTCATCTG
GCAAATCCAAAGCACTGAGATACGTCATACGGGGACCGTCCCGGACGCTA
TCATATATTTCGCAGTGATGTGGAGATGGACTGTGTTAATCAAATTATAG
ACCCAAACAGACGGAAATTTTTTCTAAAGTAACAATTTTTCGTAGCGTCG
AAAGAAGCGTATTAGGATGTAGATTTCAGAACTGCCTGCTCAGGTAAGTT
GTAGCATGTCTCAAAAAACCTGAAAATTAACATAATTTTTGAAGGCCATA
AGCTGGCGGAAAATGAGGAAACCAATGATTTGCTACGAAGGATTGGCTAA
AAATAGAAACATGAAATTTGGACTGAAGCTGCACATCATTAAAAGGATCA
TTTAGCAAAAAAATATTTTTGAATATTTGCTGACATCAGCACATTTTTGC
AAAATTTCGTATTTTGCTGATTTCTGCTGACCACAGCAAAATTTCGAAAA
GTTTTTTTTTGTAAAATGATCCTTTTAATGATAATCAGTCTAAATTTCAT
GTTTCTACCATTAGCCAAACTGGAGATATTTAAAAACCAATTTTGCTGAC
GTCAGCACTTTTTGGTTTTTGCGCTTTTTCGCAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCAGTCTGTTTTTCCCTGTAGGTTCCGTATTGAAATATCTCAATCTT
GGCAACCATCTGATTATCCCTTTAAGTACAGTAACAGCCAGCTCTGAAAT
GCGCTTCTTTTGACGTATAAATAACCATATCTGAGGCCCCCAATTTTCTG
CGCCAGACTTATTTATTGCCATACACGAGTTACGTACTGTGAATTATCAT
CGTTTTGATCATCTTTTTTTCAGGTTCTTCAAAAAGACCATGACGATCAC
AAAGCAATGAACAGTCAACACCATCTCCGATTTGTCCTCCACAAATATAA
CGAATCGAAAGAAGAGTTAAACTCGATAAAAAATGAGTTATATATCGCTA
AAAACGAGTTAACTTCATTGAAAGACAGATTGACTGATTTTCAGATCGTG
CAAGATGAATCGAATGAGAGAATCGATTTTTTGGAGGAAGAGCTACGGAA
ATCAAGGAATGAAAACGTGAAAACACTCGAACTCTTCCAAATGGTTTCGA
ACACAGTTCAATTACGCAGCCTTAATTTGAAATCATGTGAAGATCTTTTT
CATTCAATTAGCGAAAAAAAATTTGAAGAAGAAGAATTTATGCAAGTCGA
GCCAATAAAAGCCGATGACAAAGTATATAATTTTGACGGTTTCAACGAAT
TATACAAACTTTTCCCGAAATCAAATTTACCTGTTTACAAAAAGCGAATG
GACAATTTGTTCAAGAAAATGGAAAAAGGGAAACTTTATTTCCATCAACA
AAACATTTTCGTCAAACTCTCACCATTTCCTNGAAACTTTATTTCCATCA
ACAAAACATTTTCGTCAAACTTTCACCATTTCCCCGTAACAATAGTGAAC
AACTTTTCGTCTACCATGTCACAGACATCAACATTTTTCGAAACGATCCA
ATACGACGCACCGTCTTCGCCAACGACAACTTCATCTTGATAGTTGATAT
TCGATCATTATATCATCTTTCCATGCAAATCACGAATTTCAATGAAGAGA
ATTCCGAACTCTTCCTCGTCAGCCGTAAAAACCAGCAAAAGTTTTTGTTG
AAATATGGTTACTATAACAACTATTTCAATTGGAATGATTTCAAAAACGA
GAAGAATGAGGTCATTTTCTATTTGAAGAAAAAGTGAAAATAAAAATTTT
TGTTGATTTCTGGTTTACACTTTTTTTATCTGCTTTTCCGCTTGAGATAA
ATATCTTCTCAAAAGGAAGATTCTGTTCCAATGTGATTCCATAAACGAAT
AGAACGAGAACATTGCAGAAAAAAATGAAAATGAAACACTTGAAAATTTC
GATGGAATACGAACGAATCCAAAGATGAATTTGTTTGGGAAGAAAGAGAC
TTTCTGATACCATTCGAATCGATTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030570XLOC_030570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048044-exon-scaffold_14-1575043694:663577..664293TCONS_00048044-exon-scaffold_14-1575043694:663577..664293Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1575043694:663265..663316TCONS_00048044-exon-scaffold_14-1575043694:663265..663316Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1575043694:662752..662859TCONS_00048044-exon-scaffold_14-1575043694:662752..662859Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1575043694:662294..662458TCONS_00048044-exon-scaffold_14-1575043694:662294..662458Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1575043694:660813..660890TCONS_00048044-exon-scaffold_14-1575043694:660813..660890Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1575043694:658066..659220TCONS_00048044-exon-scaffold_14-1575043694:658066..659220Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:663577..664293TCONS_00048044-exon-scaffold_14-1510915933:663577..664293Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:663265..663316TCONS_00048044-exon-scaffold_14-1510915933:663265..663316Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:662752..662859TCONS_00048044-exon-scaffold_14-1510915933:662752..662859Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:662294..662458TCONS_00048044-exon-scaffold_14-1510915933:662294..662458Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:660813..660890TCONS_00048044-exon-scaffold_14-1510915933:660813..660890Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1510915933:658066..659220TCONS_00048044-exon-scaffold_14-1510915933:658066..659220Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:663577..664293TCONS_00048044-exon-scaffold_14-1491911889:663577..664293Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:663265..663316TCONS_00048044-exon-scaffold_14-1491911889:663265..663316Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:662752..662859TCONS_00048044-exon-scaffold_14-1491911889:662752..662859Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:662294..662458TCONS_00048044-exon-scaffold_14-1491911889:662294..662458Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:660813..660890TCONS_00048044-exon-scaffold_14-1491911889:660813..660890Clytia hemisphaericaexon
TCONS_00048044-exon-scaffold_14-1491911889:658066..659220TCONS_00048044-exon-scaffold_14-1491911889:658066..659220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:658066..664293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.127363	0.182255	0	0.220418	0.124296	0.199244	0	0.785594	0.750311	1.41471	0.123356	0	0	0	0.515019	0.614209	0	0	0	0	0.144078	1.90214	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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