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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048013 ID=TCONS_00048013|Name=TCONS_00048013|organism=Clytia hemisphaerica|type=transcript|length=844bp
TATAGGAataactgaaaaaaatatttcaaaaatgctGTCAATTCTTCGCT
CTACTACAAGGGGAAGAACAACACAAATCTCAAGATGTCTTAGTACAACT
TTGCAGACAAGCCAACAACAGAACGTCTCTGCTGGAGAATACAagtaTGT
GGCTCAGCTACCTTCAGAAACCACCCGTGATCTTCATTCAATTAATGAAC
GAAATGCAGCCACCATGTTTGCTACTGAACTTGTAAGAGGTATGATGATG
ACCCTCAGTTACATTTTCCGTGAACCAGCCACTTTGAATTATCCTTTTGA
GAAGGGACCATTGAGTCCTCGTTTCCGCGGAGAGCATGCATTACGGAGAT
ACCCGTCGGGAGAAGAAAGATGTATTGCATGCAAATTGTGTGAGGCTATC
TGTCCTGCTCAgGCCATTACCATCGAAGCTGAGCCAAGACCAGACGGCAG
TCGTCGAACGACACGGTATGACATCGATATGACCAAATGTATTTATTGTG
GTTTTTGTCAAGAAGCATGCCCTGTTGATGCTATCGTCGAGGGACCAAAT
TTTGAATTCTCGACTGAAACTCATCAAGAATTATTatacaacaaagaaaa
attgctTGAGAACGGAGACAGATGGGAGCCTGAGATTGCAGCAAATATCC
AGGCTGATTATTTGTACCgttaaaatatgttaatttgtGTCCATGTTTGG
AGACAGATGAACACCTTGTTGGATTTTCATTGGTCGAggatttattttta
ttagtgAAGAGATAAATTAAGACcagagaaaaaaatgtaaatacgctatg
aataaaaagaatttgttttttgtttttcagtttttgtctTTTNN Run BLAST on NCBI protein sequence of TCONS_00048013-protein >TCONS_00048013-protein ID=TCONS_00048013-protein|Name=TCONS_00048013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
IGITEKNISKMLSILRSTTRGRTTQISRCLSTTLQTSQQQNVSAGEYKYV
AQLPSETTRDLHSINERNAATMFATELVRGMMMTLSYIFREPATLNYPFE
KGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDGS
RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHQELLYNKEK
LLENGDRWEPEIAANIQADYLYR Run BLAST on NCBI transcript from alignment at scaffold_14:692037..705791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048013 ID=TCONS_00048013|Name=TCONS_00048013|organism=Clytia hemisphaerica|type=transcript|length=13755bp|location=Sequence derived from alignment at scaffold_14:692037..705791+ (Clytia hemisphaerica)
TATAGGAataactgaaaaaaatatttcaaaaatgctGTCAATTCTTCGCT
CTACTACAAGGGGAAGAACAACACAAATCTCAAGATGTCTTAGTACAACT
TTGCAGACAAGCCAACAACAGAACGTCTCTGCTGGAGAATACAGTAAGTA
ATCTTACTTCTTACTTCTTCTTTAGCTCGTGTTCGCAGGTGCCAACATTG
AGTGGTTAGGGCGAAGGCCAACCATAtccttccttttctttttcttcaag
acCTTCTTGTAGAACTCGTCTGCTGACCGACCATCAAGCACGTGATCTTT
GAGTGTTTTGATTGGTCGGCCTCTCTTTTTGTTAGTGTTGTCGTTGAAAC
AGTAAGTAACATGTTGCAATTTTCTTTACCATTTTTATCTTATGTGGTTG
TTATTTAATTTAGCAGAACGTAGCAGaacaaacattttattttgccactt
atttcaaaaaaatttaaaaaatgctattgagtatttttttctgaattatA
TATTTTCCTCTACTTGCCGGTACTTAGCCCTaactttcaacattttttta
aactatCCTGCGAATCAAAAAAAAGCTTTTCCTGATAATTGAAAGGGCTG
CAATAACGAATTCATGAAAACCATAAACACTTTTGGCaggaaaagacatt
tttttatacCTCTTTCAAGTGGCAGTGCAAGTAAAACATTACAGTAAGAA
AAATCTGCGTTTTCACCTTATGATGTTATCTGGTAACTTTTTAAGTTAAG
TGATGTAatattttattcaaaacaaCATTAGTAATTTGTGGTGATaaagt
gctctataccaagGATAAAGAGtgctaaattcaaaatttatttttcttct
aaaaattAGAAACAGCAGACTGTTTCACGCCTTCTTCAGAGACGATCATC
AGATGTATGAATGAAAAAATACTCTTTGCCTCATCTCCCCAAGATGCTCA
AAGGGTTTATCTCAATCTTCAGGCTTTATAATGATCAAGAAATAATAATG
CATCAGAATTTAACCTGCTTTAACTTGTATTGATCaggatttattttatt
tttcagagtaTGTGGCTCAGCTACCTTCAGAAACCACCCGTGATCTTCAT
TCAATTAATGAACGAAATGCAGCCACCATGTTTGCTACTGAACTTGTAAG
AGGTATAGTAATATGTCATCATtactcttttgaaaattatcCTGTGAAAA
TAACCTACATGTTTCGAAAACGTATACCTACACGTACCCTATAGAAAATT
GGATCattttcaattgaaattttttctttatggAAATCTGGGATAATATT
AATTTTAGAGCACACATACCCTGTTGAAACTTGAATTTTTCTATTGAAAT
TATGGAACTATGGAAATTATGGAAATTATGGAATAATATTAGTTTTAGAG
CTAAATCTTTGGACAACTTTTACCAGTGTATGCTAAGGTATTGGCAATTA
TAACCTTAGTGTCAAACTTCATCGAAATTGCACTTTTTTGGTGAAAGGTT
TAAAATAACAAATACAGTAGGATCCCGGTTGTTCGAAGCTTtaggaagag
aaaaacaaacaaaaagagaCACAAATGGAGAGAATATaacgaaacaaaac
aaaataatgatGACAATTTAACAATCTGAACTTGAAGAATACATCCAAGT
GCAGAAGCACGAAACTTTTGAGTTATATTCttttacattaaaggaagaaa
ttttggcgggaatttaatttggcggatggccaacaAAGTTTtttggaggg
aatttaatttggcggatggacgaaaatactaaatttggcgggaatttaat
ttggcgtttgctgaaaaatttatccttaaaatggcgtaaaaacagcaaaa
aaatgcaaaaccaccttaaaagagatcatattttcaaaaagtttaatttg
gcgggaatttaatttggcgtttgctgaaaaatttatccttaaaatggcgt
aaaaacagcaaaaaaatgcaaaaccaccttaaaagagatcatattttcaa
aaagtttaatttggcgggaatttaatttggcgggtggcggaaaaatgaaa
ttttggcggaaacttaattggcggattctggcaaaatccgccaaatccgc
caaattttctttccgccaaaatttcttcctttaagtatttaaaagaaaac
ttttttcaaattttacttgGCTCTGGTACTGGTATCTTGTTGTTTTATAC
CATAGAGCACCTTTCAACATGATTTCATGGCAAGGGTTCAAGtcctactc
tgtaccagagtgtatctcacgtttatcgcttcgtagtacactctgtgcgc
attgtctggttaatgaaaaaattcccatacggagacctctgcgatgaagt
atgatctATAGAGCtacacttctctcatcgtctcctTCTCTCAacagcac
tccatcgcagcggtctatttgaaaaatctcgaatgagaaaagacaatgaa
aacATACCCTCTacgacaatgaattttgaaatcatcCGTAGATACTGGGT
AGATACAGACAATTCAAGTCTTATTCAACTCttatttctaatcaactgat
gaatgcgtaagcaagaaactttaagtattgaaaagaaatacaacgtttct
taatctttatgtatCTTTATGTATGCTTATGTATTGAGCACCCTTAATTG
TGCAGAGAAACACATGAAGACAATTCAAGTCCATGCACGTTCATATTTTT
ACATCATTTTTTCAGGTATGATGATGACCCTCAGTTACATTTTCCGTGAA
CCAGCCACTTTGAATTATCCTTTTGAGAAGGGACCATTGAGTCCTCGTTT
CCGCGGAGAGCATGCATTACGGAGATACCCGTCGGGAGAAGAAAGATGTA
TTGCATGCAAATTGTGTGAGGCTATCTGTCCTGCTCAggtatgtttttga
tgtttttttttatctcgctAAAAGATTTTTATCTGAAGTTACTTACTTTA
GGTGTACAGACTTTCCCGAGCGGAAACTTTTgtgaggtcgaaaaatcgcg
aaatctaCGACATTTACCTTCGCGaattgttggataaaaatgagaacTTC
TAAATGAACATTGgccaaaaatgataaatattccTTTGAAtctgataaaa
taaaaatggttattctttgacttttaaaaggCGTTGAATGGCTAAAGATA
TGctgaaaatttgaactttccaAGTTTTATAGATTCTCcaattttttaag
aatcttTCGCAatcataaactttcgcgaattaccCTGTTAtcgttaagaa
ttttcaaatctATTAACTTTTGCGAAAAGggtaaaattcgcgaaaatcgc
aaaAGCTTCTGCCCACGAAAGTTTGTATTCCCAAAGTATTCTTTGTAAag
ctaaaatatttaaaaataaactatcaagagtttctactccatgTACAACC
ATCAGATATGAGCTTTGTGAGGCGATCTGTCCTGAGcaggttttttttaa
tgtttaaaaaaaatgaactttcaaGAGTATCTACTCTGGCCACTTATTTG
TTCCTTGACTTGGAATTTTCTGGCAGTATTTCTTTGCCAAAAAGTTCACT
GGCCGGTCTGGAATGGAATTTCAAGAGGGAATCTTGATGCACTTTTATTT
TTCGTTGTAATAAATACTATTTTCATAAACAatgaattgaaataaaatat
tataagaGTCTGACACTAATTACCGCTAGTAGATTTtgtcttttggacgt
ctaatgtacgtttctaggacgtccaaaGGTCTTAAAAGCCGTCCATTGAA
TGTCCATAAGACGTTGGGTTATTTTTGTTTCCACCGTATGATACACTATT
TTTCATAACACTTTCAATCTTGATGCTATCCGCTCCAGCCCGCTCTACTT
CTTCACTTTACATTCAATGAAGATGGAATCATCCATCAGAAACTTCTCAT
TTTCCAGTGCGTTCAATTTCAAGAGCAACGGGTATGGACACGGCAAATTA
GCTGTCATTTTAGGTTTCACAAAACACATCCTATTTTCGTTCCAATTTAT
TAAGCCCTGACCACACTTATCTTTCGTTCTGTCACCACACTGGTTCAGTA
GTCTACAACGTACGTCCATTTGAAACGGCCAACTTAAGATATTGTCAAAT
TCTGTTCTCATAAGCTGGAAAAATAAGTTCAGTTCTGTGTCTTGTTTATC
ATGGTGGTACTCGCAATGTCTCTGTTGTGGTTCACGGTGATATTGGTGCA
ATCTCAAACAATATTTATATCCATATCTGCTCGTAAAGCAAGGTTCACTT
TGCAGTGCTGGCAATTCACCATCCAATAACTTGTccactttttgttgaaa
atttttgattttccaaattaAATGACCATCATAGCTACATGATGGTTGTC
CTCTTTGTTGTTGTCGGCTATGGTTGTTTTCAACCACAAGAAGTTCATTT
CGAGTTCGCCAATCAGATGTGTTTCGTCCATGAAATGAAGATGCATGCTG
CAAGTTAGATGTAAAGAAATTGTGATGTCCTGTAATACGGTTCAACACTT
GATGTTGTCTTCGCTCTGATCTATCCATCCCATCTCTAAGTTGGAATAAA
TCAAAGCTCTCAGAAAGATGCTTTGCCATTTCTTTGACTTAATAAATATT
GTCGCTGTTGACTTTTTTCTTTGGTTTGCAATGGTTGGACATCAGTTTAA
CTTTGGCCTTTGATGAGTACTTCATTTATACTACACCTCATCACTATATC
CTACAAAATATACAATGACATTCTATTGACAAATGTGCTTAAAGATCAAA
TCTAGAAAGATCTAGATGTTGCTAGAAAGCCAGTGACCgaataaattatt
attttgaataaatcaattCTTATCATGACATCATAATTCTGTGTCATTCA
ATAAGAAGGTTGCAAGTTCAGTGACACTGACTTTCTTatattttatgacg
tcataatttcagaTTGTGTTCCTTGCTCTACAGTTAAATATCATTGTTGT
TTTTCGTCTTGactgaatttttctttattgGGTAATTTATGCTAAACATA
CTTTGCATAAACTATGCTCTTTAAGATTAATAGTCGTTCATGATTGATGT
CATGTGATGTCTCTCTCGTTGCCATGTAGTTCTTTATGCAGTTTTTGCAT
AATTTGTGCTATCTTTTTATCAACGGTTTTTCATGGTTTCATTTCAGACT
TCTCAGAAGGTTGCTATTAGTttgatctttgtttttagaTTGCTTAATTT
ACTACGTAATGCTTTATTACTTACTACGTAAGCGACCTTATGCAGTGGTa
aagcatccggctacggttcgcaaggttgtgggttcatcccccagccgggt
cacaccaaagattctcaaaatggtacttgatgcctctctgcttgatgctc
agcaattaagataATGActaagggtaagtggagaaatccagggaaaagag
tggcgccctcccctaccttcgggggTAAGAtggctatcgaaagaggagcg
ttcgggtcgcctccgactgcggtcgcagacttacttatttACCAGTATTT
ACTACGTACAAACGTTGTCTCTTTATTCATTGAGCTGTCTATTGCACGTT
TTTTTACAgttaaattaagaaaaaaatgatccaacctcagatttcagaaa
caGCTAAAAATGTTATGCTCTTTCTGAATCAATAAGTGAGCAAAGTAAGC
ATATTAGCGAAATTatatattttgcatttttgaggacggtaaagtgactg
aagcgatttggaataacccgcagttttgacccgcaaaatcgaggacgaca
aaagtgctgatttaccgtcgtcctcagccgGTCAGGATCTAgtaaaatta
gaaccttaccgtgtccgtcgcagaaaaacacacatacataaacttggTAT
TAACCCTTCAAACCCGGGAGACACTCATACACGTTCGGAATTTGTCAATT
TACCGAGTCTCAGACTTTAAGGCTATAATTACTGATcacttgatttaaaa
gggcATAAACGGAATGCCTTCAGAAAGAAAGAGTAAAGAAACATTTTTCT
AATGGTACTAAAACCATTGTCTAATTCTCAAGCTACTctacaagctttta
tgccagtttcaaattttgaatttcaaagaaaaaagttggaaatttccata
ttttcaaaaaatgtagcgCATTGATGGAAAGGTACGAacgttttaagaac
attttatccCAAATTTAGATGATTCAAATTATACAAGTCAACATGTTTTG
GAATCAGTGTAATGCTTATCAATTTGCTGACGGTCAGCACTGGCGGTCAG
CATTTCATTCATATTTTCATGGTCTCGAGTTAACTAGATTTAATTAATTT
CGATCATTCTTTACATAAATTACTTCATCGCTAATTTTCGCATAAATTAT
GCTAAATCATCGTATTTGTGGGCAAAGGTATTTTGTATTCCATTCAAAAT
TAATCATTATCGGATTTCTTCATTCGGAGAattgcataaattatgtcatt
ttctaatcatttgaattttttctttacttgtgaattgttttagttaaatt
ttaaTTTACGTGCTTTCTTTGCGCAATGTAGGAAATCTTTTTGATTGccc
aataaaatttattttggcgggaagagaGTTACGGCGAATATTGAAATTAT
TATTAGAAAAATTACTAttagaattgacaaacgaatggaatgataagaCC
TAtgaattgtaaagatgtaagattgtatcatagaggtcaatagacctgag
aaatacacttctataaatcaAATTAAGTTAAAATTAAGAAATggctaaaa
aagttgaaaaagtatttcttaAGAGATACCCTGTCCCGAAATCGCGCAGA
TTTTTCTGCATTAACACGTACAGAGTTTGAAATCTTTAACTTGCTAAGGC
TTGCGAAAAAAGACCTgtaatttgttttcaatttatGTTATTTTTTAGTT
GTATTATAATTacaatcattaaatttttctttaattcaaCTCAACTTTCG
TTGAGGTTCGTacataaattacaaaaaagtcttcaaaataatcTAACCAA
AGAATGTATCCAaaagtgaaataattttatCAAGAGTTTGGTATGGGATT
TTTATTACGTCGACACTATTGATATGAGAATTGATTCATTTACTATAAAG
TTCCTNAGTGAAATAATTTTATCAAGAGTTTGGTATGGGATTTTTATTAC
GTCGACACTATTGATATGAGAATTGATTCATTTACTATAAAGTTCCTGCT
AAGATATGTGGAAAGGTCTCTAACTGGAATTACGATACTCTAATTACGAT
AAAATCAATGCCAATCAGAAATTCGAGCAAATAAGTCACGTGATCAATCT
CGATTTGGTAATCCACCATGGCGTACTAAATCTAGATTTTAGTGTTTAAA
AGAACATATTAGGCTGgaaattaccaaaaaataaTAAGCACTTCCAGCCT
CAGCCAAAATTTAGGTGTTCTAAAAAAGTGCAAGCTttaaatgttatttt
tattcaacTTTTACTTCAATATAGAGTGAACCATCCTTCAAAAATCCTTC
TTTTTCCAACTTTGACGGGCAAATCAAGAGTTCGCAAACCAGTTCAGTTT
TTGTGTCTCTTCCAGTTCTGAGaaaatccttccaagaagtgtctTTATTT
CGACCTTGCTGATTAAGTAATCTTCCTTTGACTTCTTTCTTGAAAGGCCA
ATCCAAAATGTTATCAAATTCTGATTCAACCAGTTCGAAAAACAAAGCCA
GACATCTACCATGTTTGAAATCAACGTAAGGTTGAAGCGTCACACGAAAT
TTGTACCCAAATGGATTTGTATAGGACGGATAACTTTCAATCATTTCAGT
AGTatcaaaatttgttattctCTCCAGAAAATTGTATACTTTCCATATAA
GATGGCCATTCTTTGTGGCTGAATGAGTATCCGCTTTGATATGGTGTAGA
AGAGGCATGCTTCGTGAAAGCGTTCGTCCAGTAAAGGTTTCTTCTGGCAC
ACTGGCTTCTACCTCTGGCACTCTTTGATTTAACCCTTGATCAGCTGATA
TTATGAATTTAACCAACACTAAATTGTTGGAATGAATAAAAGAAGGTGAG
AAGAAACTGGAAGAAACAGAAGTATATTAAGATAGAGTTATTTATTCGGT
GTTCGAATTCTGcataaaattatcataaatTTACGAAAAAATCATGATTC
TATAAATTATAAATCATGATATTCTGATTTTGTTAGTTTGGTTTTTCCAG
TTTAACTGTGGAATGTttttatggcgcgccaaagcggaaataaatactat
ctttttaaaacaatactatcttcgtttaaaacatactatcttttttaaga
catactattttttgcttaaaaaatactattttcgtttaaaacatagtatc
tttaaaaaaataatactatttttactatctttcatACTATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtaacaaaggagaaaatagtaatttgc
acgagtccgaaggacgagtgcaaattacggtattttctcctttgttacga
gtgatcaATCGTTATTTGCACGACATAaggtttgattttattttaaataa
aatttaaatcatAATGCTGAATAACTTGAAAAGAAGTCATGACATCTTTG
AAATTCCGTTTTATTGGTTTTATTGGGAAGATATGCCAGGTTCAAAAAAT
GACACTGCTTTAATAATATTAAAATGGATCTGAACAAATCAAAACGTGTT
TTATAAGGGAAAGTGACGTCAGTGTACGATTACTTAGATGATATTGggca
atttaaaaacacttgtgaacttaattttttttctaaggaAATGTAACTCT
ACATAAATAtagtaacaaaaatattttgggaaagAAATGGAGAGtaatta
ttattagtattataatcaatttattttcagttggtaATATTAACGATAGG
ACCTAATGTCCTGGATAGTTTACAGCCGTTACGGGTTTACTAATAAAATC
CAACTTTTATAAACATAGCTATTTACCAAAATTTGCATAATGAGCAAGTG
CAAAAATTCTCTGGTGACATTTCTAACTTAATAATTATTTATAATTATAT
ACACCATATTCTATAAAGAATCTTCGAAGAGGCATAAAAGTATATCCCAA
TAGAATTATGATTTATTTCAtgaggaaaattataaaaactaaaaattggc
TTGTCtaatgagaaaaaaacaaaaaacagtaTACTCTCTTCACCCATTGA
CCTTAAAAATGACCCCAAGAATGTGCTTTAAAAATGGTGGACTTTCTTTA
GTGTCTTAAGATtcagaattaaaaaaacaactgCTGGTTTCACATTTGGG
GGGGGGGCGGTTTGTTACTATTTACCaagctttaaaattttcatgattta
ttCAGGCCTAAAACTATATTAGAATATAAGACTGGTAAGAACCCTAGGGA
TTTCGTAGTTTAGAAATTGGGTTTTATTGGGAATAATGGGGTGGTATCAT
AATACtaacaaattcaacaaattacGTTGAATGAAATTCATATCTACCTT
TACGTTTACaagtttacaagaaaaatcCAACGAGCCATTCAATCCAAAAA
TACAAcaacaatattttaaaataaattttgtcaatgttattttttaatgt
tttccaATTTCACTTCAATGTAAAGACTACCATCGTCCACAAGTCCATCC
AAATTATCTAAAACAATACTTAGCTCTGATGGGTAGGACTTATTGTACCC
ACAAGTCAAGTCCACCTCTTTCCACTTACCATGTCTTGATGAACCTTGCT
GGCTCAGAAATCTACATGAAATCTTCACAGTGCCAACTGGCCAATTTTTC
TCTAATGCATTTCCATATTCCGACTCCAAAACAACGAAAAACAAACCAAG
ACATTTTCCATGTTCAAGATGTTTAAAAGGGTgtaatttcaaacaaaatt
tgtgaCCAAAGCTTCCTGTGAAATATGGTAGGCTAGTCAGCTCATACCCA
TTCTCAAGGCCCATAAAACTAGCTTTGAAATCTTTAATTTTCCAGATAGC
TTGGCCATTTTCTGTCAAACTGCTATGGAGTTGGAGCTGCTCTTTTTGAG
CCATCACTCGttccaaatttttttgttgCTCTCGTGATCTTTTCTCAGCA
TCCCTTAATCGATCCTCCAAAACCTTGACTGTGTTTCGAAGCATTTTGTT
TTCCTCCATCACGTGTTGAAAGTTTGGGGCGGAGTTTTCTTCAGATAAGC
TGTTCAAGGgagaacatttttctttttcaggtaGCATCTTTTGTCAGGAA
CTCTAGTCTGAAAAGAAGAACAAAATAACATTAGTTTTGTAtacaattat
aatttttccCTACTAAGCCCTCACTATGCATATATTTTTTTTNTCTAGTC
TGAAAAGAAGAACAAAATAACATTAGTTTTGTAtacaattataatttttc
cCTACTAAGCCCTCACTAtgcatatatttttttttcacaagtttggttTG
TTGTTGTAGTTTTGATGAGAAACTTTCCTGCGCTGAATTTAGTGCGCATG
CACGCGTGAATTCTTTTGGNttttttttcacaagtttggttTGTTGTTGT
AGTTTTGATGAGAAACTTTCCTGCGCTGAATTTAGTGCGCATGCACGCGT
GAATTCTTTTGGTTTTTCCCGCACAttctgtaaatttggtaaaaatattg
gtTCGGCAAAGTTAATTGGTCTCAGTTATTCAGTTGACAAATCGAGACCA
CGATGATGCGTCATAGGTAAAACCGCATTAACAGATTAACTCAAAGATTG
TATTCGTAACCGATTCCTTTAGCTGAAAAAATAGATAGTATGATAAAAAA
ACCTTAACAAGTCAATCAGAAAGTCGATCAGAAGTTGCTAAGTTGAATGG
AACTCTAAAGTTCAAATTTTGGTAGCCCGATTCTAAGGGACTAAAAATAC
TTCTTCTCGAAAAGGAAATCTTTTAAGGAAACTTCCTCTTAGAAAAAAGA
TGTTTGAAATATTACCGCTATTTTGCTGTATTGCTACCCCATGTTTTCTG
CTCCTCATCGTTAACGGATCGTGTTTTGAATTCACGCCCTGAATTCACGC
CCTGCTTTGAATTCCAGTGAATTCACGCTCTGAATTCATTTCGCATACTT
TGACTTTTGCATCAAAGTATGACTGTCTCTTGGTTTTGTTGAGCTCTTGA
AACCAAATTCCTTATTTCGGCGGTATACGTCCAATTTAGCCACCGTTGAA
AGATTCCAGTCTTCAAAATGATTGTTTACAACTGTTCTCCGCTCCtcttt
tttctacattttccATCATGGCTGTTTTCTATGCATGAANTTCATTTAGG
CGAATGTATGATTTAGTTTGGCAAatgttgaattttttgaaattttacca
atCAGGTATGAAATCTATGAAAAGGAAAGGTTAACTTTCTGTAAAATTAT
ATATGCCTTACAATCGCCAAATTCGCATGATGAAAATACATACAACATGc
taagaacaatttttaagcttaaaactcaaaaagttaagaacatccaatgg
cttccaaaattttagatgttgttcttattaaaaaacgtacATGTATTTTT
CACAGGCCATTACCATCGAAGCTGAGCCAAGACCAGACGGCAGTCGTCGA
ACGACACGGTATGACATCGATATGACCAAATGTATTTATTGTGGTTTTTG
TCAAGAAGCATGCCCTGTTGATGCTATCGTCGAGGTAAGGTTGTTTTTAC
CAAAAGGTTCTCGAAATAAGTGAATATTTTAGAcgtacaaacttttgtga
aCAGAAACTATCGCCATTTTCGCGAATTAATGctctttttcacaaaagtt
aatgtctttaaaaattctttcttATAACATGGTAATTCGCGAAAGTCTAT
GCTCACGAAAAATGCGTAAAAAATATGGAATCTATAAAACTTTTGCGAAA
TTGAATTAATTATAAAATTTAAGCATATTGTTATAGCCTTTAACGCCTTG
CAACCGTTTTTTATTggattcaaaaaacatttgTCACCTTTTAGGCAATT
TTCGTtttaaaattgtcattttttatccaacgattcgcAAAAGCTAATGC
tcgtgaaaaatatttgttcgtcaattttgcgaaagtaaatgttgtaaACT
TCGTGATTTATCGACTTCGCGAAATTccctgctcgcgaaagtttgtacgc
ctaaaagTAGGccacaaaatgttaaaaatagatTCTCTTTAACTTTCATA
TAGATACATTTATCAATTTAATGAAGGGGACAAAATTGGTtttaaatgaa
agaaatttcctCAAGAATGATTTCTACACTGATGGCTAAATGTACATAAC
GTACCCCATGGAACTAAAATGATCTTTATGTTTTTGGGTATACCTCCACG
TCATCACTAACCGAcgttatttttgaaactttactaccgacccccggCCC
TGTTCATAGTTATTTGAAATCATTTCTAATCCACGtgattaaaggttttc
tttttacataagttTTCCCGTTTcgtatcagacacatatttcatatcagg
acccCAGTCTCTGCCTATTTTGTGCTAATATaacctctttctgaccaatc
ttgctccacatccgtggcagtccaatatgaaaaagcttgtaaattaaaat
tgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaag
aagaaatattttatcattaaaactaaattaaaaaaaactgtttcttTCAA
AGGGACCAAATTTTGAATTCTCGACTGAAACTCATCAAGAATTATTatac
aacaaagaaaaattgctTGAGAACGGAGACAGATGGGAGCCTGAGATTGC
AGCAAATATCCAGGCTGATTATTTGTACCgttaaaatatgttaatttgtG
TCCATGTTTGGAGACAGATGAACACCTTGTTGGATTTTCATTGGTCGAgg
atttatttttattagtgAAGAGATAAATTAAGACcagagaaaaaaatgta
aatacgctatgaataaaaagaatttgttttttgtttttcagtttttgtct
TTTNN Coding sequence (CDS) from alignment at scaffold_14:692037..705791+ >TCONS_00048013 ID=TCONS_00048013|Name=TCONS_00048013|organism=Clytia hemisphaerica|type=CDS|length=3360bp|location=Sequence derived from alignment at scaffold_14:692037..705791+ (Clytia hemisphaerica)
ATAGGAataactgaaaaaaatatttcaaaaatgctGTCAATTCTTCGCTC
TACTACAAGGGGAAGAACAACACAAATCTCAAGATGTCTTAGTACAACTT
TGCAGACAAGCCAACAACAGAACGTCTCTGCTGGAGAATACAagtaTGTG
GCTCAGCTACCTTCAGAAACCACCCGTGATCTTCATTCAATTAATGAACG
AAATGCAGCCACCATGTTTGCTACTGAACTTGTAAGAGGTATGATGATGA
CCCTCAGTTACATTTTCCGTGAACCAGCCACTTTGAATTATCCTTTTGAG
AAGGGACCATTGAGTCCTCGTTTCCGCGGAGAGCATGCATTACGGAGATA
CCCGTCGGGAGAAGAAAGATGTATTGCATGCAAATTGTGTGAGGCTATCT
GTCCTGCTCAgGCCATTACCATCGAAGCTGAGCCAAGACCAGACGGCAGT
CGTCGAACGACACGGTATGACATCGATATGACCAAATGTATTTATTGTGG
TTTTTGTCAAGAAGCATGCCCTGTTGATGCTATCGTCGAGGGACCAAATT
TTGAATTCTCGACTGAAACTCATCAAGAATTATTatacaacaaagaaaaa
ttgctTGAGAACGGAGACAGATGGGAGCCTGAGATTGCAGCAAATATCCA
GGCTGATTATTTGTACCgttaaATAGGAataactgaaaaaaatatttcaa
aaatgctGTCAATTCTTCGCTCTACTACAAGGGGAAGAACAACACAAATC
TCAAGATGTCTTAGTACAACTTTGCAGACAAGCCAACAACAGAACGTCTC
TGCTGGAGAATACAagtaTGTGGCTCAGCTACCTTCAGAAACCACCCGTG
ATCTTCATTCAATTAATGAACGAAATGCAGCCACCATGTTTGCTACTGAA
CTTGTAAGAGGTATGATGATGACCCTCAGTTACATTTTCCGTGAACCAGC
CACTTTGAATTATCCTTTTGAGAAGGGACCATTGAGTCCTCGTTTCCGCG
GAGAGCATGCATTACGGAGATACCCGTCGGGAGAAGAAAGATGTATTGCA
TGCAAATTGTGTGAGGCTATCTGTCCTGCTCAgGCCATTACCATCGAAGC
TGAGCCAAGACCAGACGGCAGTCGTCGAACGACACGGTATGACATCGATA
TGACCAAATGTATTTATTGTGGTTTTTGTCAAGAAGCATGCCCTGTTGAT
GCTATCGTCGAGGGACCAAATTTTGAATTCTCGACTGAAACTCATCAAGA
ATTATTatacaacaaagaaaaattgctTGAGAACGGAGACAGATGGGAGC
CTGAGATTGCAGCAAATATCCAGGCTGATTATTTGTACCgttaaATAGGA
ataactgaaaaaaatatttcaaaaatgctGTCAATTCTTCGCTCTACTAC
AAGGGGAAGAACAACACAAATCTCAAGATGTCTTAGTACAACTTTGCAGA
CAAGCCAACAACAGAACGTCTCTGCTGGAGAATACAagtaTGTGGCTCAG
CTACCTTCAGAAACCACCCGTGATCTTCATTCAATTAATGAACGAAATGC
AGCCACCATGTTTGCTACTGAACTTGTAAGAGGTATGATGATGACCCTCA
GTTACATTTTCCGTGAACCAGCCACTTTGAATTATCCTTTTGAGAAGGGA
CCATTGAGTCCTCGTTTCCGCGGAGAGCATGCATTACGGAGATACCCGTC
GGGAGAAGAAAGATGTATTGCATGCAAATTGTGTGAGGCTATCTGTCCTG
CTCAgGCCATTACCATCGAAGCTGAGCCAAGACCAGACGGCAGTCGTCGA
ACGACACGGTATGACATCGATATGACCAAATGTATTTATTGTGGTTTTTG
TCAAGAAGCATGCCCTGTTGATGCTATCGTCGAGGGACCAAATTTTGAAT
TCTCGACTGAAACTCATCAAGAATTATTatacaacaaagaaaaattgctT
GAGAACGGAGACAGATGGGAGCCTGAGATTGCAGCAAATATCCAGGCTGA
TTATTTGTACCgttaaATAGGAataactgaaaaaaatatttcaaaaatgc
tGTCAATTCTTCGCTCTACTACAAGGGGAAGAACAACACAAATCTCAAGA
TGTCTTAGTACAACTTTGCAGACAAGCCAACAACAGAACGTCTCTGCTGG
AGAATACAagtaTGTGGCTCAGCTACCTTCAGAAACCACCCGTGATCTTC
ATTCAATTAATGAACGAAATGCAGCCACCATGTTTGCTACTGAACTTGTA
AGAGGTATGATGATGACCCTCAGTTACATTTTCCGTGAACCAGCCACTTT
GAATTATCCTTTTGAGAAGGGACCATTGAGTCCTCGTTTCCGCGGAGAGC
ATGCATTACGGAGATACCCGTCGGGAGAAGAAAGATGTATTGCATGCAAA
TTGTGTGAGGCTATCTGTCCTGCTCAgGCCATTACCATCGAAGCTGAGCC
AAGACCAGACGGCAGTCGTCGAACGACACGGTATGACATCGATATGACCA
AATGTATTTATTGTGGTTTTTGTCAAGAAGCATGCCCTGTTGATGCTATC
GTCGAGGGACCAAATTTTGAATTCTCGACTGAAACTCATCAAGAATTATT
atacaacaaagaaaaattgctTGAGAACGGAGACAGATGGGAGCCTGAGA
TTGCAGCAAATATCCAGGCTGATTATTTGTACCgttaaATAGGAataact
gaaaaaaatatttcaaaaatgctGTCAATTCTTCGCTCTACTACAAGGGG
AAGAACAACACAAATCTCAAGATGTCTTAGTACAACTTTGCAGACAAGCC
AACAACAGAACGTCTCTGCTGGAGAATACAagtaTGTGGCTCAGCTACCT
TCAGAAACCACCCGTGATCTTCATTCAATTAATGAACGAAATGCAGCCAC
CATGTTTGCTACTGAACTTGTAAGAGGTATGATGATGACCCTCAGTTACA
TTTTCCGTGAACCAGCCACTTTGAATTATCCTTTTGAGAAGGGACCATTG
AGTCCTCGTTTCCGCGGAGAGCATGCATTACGGAGATACCCGTCGGGAGA
AGAAAGATGTATTGCATGCAAATTGTGTGAGGCTATCTGTCCTGCTCAgG
CCATTACCATCGAAGCTGAGCCAAGACCAGACGGCAGTCGTCGAACGACA
CGGTATGACATCGATATGACCAAATGTATTTATTGTGGTTTTTGTCAAGA
AGCATGCCCTGTTGATGCTATCGTCGAGGGACCAAATTTTGAATTCTCGA
CTGAAACTCATCAAGAATTATTatacaacaaagaaaaattgctTGAGAAC
GGAGACAGATGGGAGCCTGAGATTGCAGCAAATATCCAGGCTGATTATTT
GTACCgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048013-exon-scaffold_14-1491911889:692037..692179 | TCONS_00048013-exon-scaffold_14-1491911889:692037..692179 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1510915933:692037..692179 | TCONS_00048013-exon-scaffold_14-1510915933:692037..692179 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1575043694:692037..692179 | TCONS_00048013-exon-scaffold_14-1575043694:692037..692179 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1491911889:693093..693188 | TCONS_00048013-exon-scaffold_14-1491911889:693093..693188 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1510915933:693093..693188 | TCONS_00048013-exon-scaffold_14-1510915933:693093..693188 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1575043694:693093..693188 | TCONS_00048013-exon-scaffold_14-1575043694:693093..693188 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1491911889:694752..694924 | TCONS_00048013-exon-scaffold_14-1491911889:694752..694924 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1510915933:694752..694924 | TCONS_00048013-exon-scaffold_14-1510915933:694752..694924 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1575043694:694752..694924 | TCONS_00048013-exon-scaffold_14-1575043694:694752..694924 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1491911889:704342..704470 | TCONS_00048013-exon-scaffold_14-1491911889:704342..704470 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1510915933:704342..704470 | TCONS_00048013-exon-scaffold_14-1510915933:704342..704470 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1575043694:704342..704470 | TCONS_00048013-exon-scaffold_14-1575043694:704342..704470 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1491911889:705489..705791 | TCONS_00048013-exon-scaffold_14-1491911889:705489..705791 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1510915933:705489..705791 | TCONS_00048013-exon-scaffold_14-1510915933:705489..705791 | Clytia hemisphaerica | exon |
| TCONS_00048013-exon-scaffold_14-1575043694:705489..705791 | TCONS_00048013-exon-scaffold_14-1575043694:705489..705791 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:692037..705791 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0051539 |
4 iron, 4 sulfur cluster binding |
| molecular_function |
GO:0016651 |
oxidoreductase activity, acting on NAD(P)H |
Blast
BLAST of TCONS_00048013 vs. Swiss-Prot (Human)
Match: NDUS8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 3.413e-97 Identity = 150/180 (83.33%), Postives = 159/180 (88.33%), Query Frame = 2
Query: 131 AGEYKYVAQLPSETTRDLHSINERNAATMFATELVRGMMMTLSYIFREPATLNYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHQXXXXXXXXXXXXGDRWEPEIAANIQADYLYR 670
A YKYV E D+ S+ +R A T+ TEL RG+ MTLSY+FREPAT+NYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR DGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETH+ELLYNKEKLL NGD+WE EIAANIQADYLYR
Sbjct: 33 AATYKYVNMQDPEM--DMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210
The following BLAST results are available for this feature:
|
