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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048014 ID=TCONS_00048014|Name=TCONS_00048014|organism=Clytia hemisphaerica|type=transcript|length=1995bp
CATCAAGTCACATAATTAATGCAacgaaattgaaattgaaatatggCAAA
TAAATTATCGAACATACAACTAGTggatttcactgaaataaagTTGTTGA
ATGAGCTAGATGAGAAAACTTCAAGATATTTGTGTCAGCTATGTGGCAGC
TTAATGAAGAACCCGATCCAGACTTTTCAAGGAAATTCAGCGTGTCTCGA
ATGTTACAAAGAAGCTTTAAAAAGGAACGAGGGGAAACAGTGTCCACTGG
ATGGCTCACCCATCGTTGAATCAAAGAATAATTTCTTCAAAGATAGAGCC
AAGGAAATGGAAATACTGAACTTGAATTGTTATTGTTTGCAACGGGAGAA
TGGATGCCAGTGGACTGGAACTATTTGTGATATGATCAAGAGACATAATT
GCAAATTCATTCCACGCAATTGCAGAAACTGTTGCGAGACATTTTTGAAC
GAGAAAGATCATTTAACAACGTGTGTTTCGTTAATCAAAGAAGGTGATTG
TTTTTTCAAGCAAGTTGGCTGTCATTTCAAGGCAATAAATAAAGAAGATA
TGGCGAAACACGTTATAGAACATTCAGAGATACATCAATCAGTTTACGAA
ACAGACGAACAACGAAACATGGAGATAAAACACCTTCTAAACGAAAACAA
GAAACTCAAACAAACAGTTGACCAGTTAACCCAAAGATTGAAAAATGTGG
AAGAGAACTCGAACCAACAAAACAATGATTTATTAGATGCCATAGCTGAA
CTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCTGAAGGTCTTACGGC
TACCATTACGGAATCTGTCAAGACTAACACTGAGAATATAAGTGATTTGG
ATTTGAAATTCCAACTACATGAGAACTCAGTTGATGATGGTCACTTAGTT
TGGAAAGTTAACAATTTTCACCAAAGAACGACTGATGCAATCGTTGGCAA
AACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAGCAAGTATGGATACA
AGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAAGGAACA
CACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAACATTTT
GGAATGgcctttccaaaagaaaatcaaattcactTTGGTCAATCAAGAAG
ACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGATTCATCA
AGCTTtcaaaaaccaaagaaagaTATGAACATTGCTTCAGGTTGTCCAAT
GTTTATGAATTTGAACAGATTGCAGCCTGAAGGATTTTTAAAGGACGACT
CTTTATTTGTCGAAGTTAGAATAGATTAAACTACAGTACCAAATTTTTAA
GGTGAAGATTTTGAGAGTAAATAAGACATcgaacttattttttttcacgT
ATTCTATCTTTTgctataagaacacgaggctgaaaattggcctgaaacta
agaacaaattgagaacaatctgagcctcaaatttcagaaattaccaAGAC
ATCTTTAACATATTCTCaactcattttaagtttttatggAAAAAATCTAA
ATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaacatttcaaaaaatt
aagaacagcccaacctgagccaaaatttactggttcttataaaaaagtgt
gtattttaAAAAGACTTctcatttttcttgattttttatcTGATAGCAAG
CGTAAGGAAAGCCAGTTCATACAAACATACcgtttttggtttgattttag
aTAAAATATCCACACGGGTAcatgttttttacaaaaacaaaatatataag
aacatatagctttgatggtcaaaatattaaggaCACCTTAATAACACCTT
TAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaatcaacaaaa
atactcaaaaaatgatgaaaataagaacatgtcaagaacatttttagtct
cGAAACTcaagaaagttaagaacaccagaagtcttcaaaattttc Run BLAST on NCBI transcript from alignment at scaffold_14:710066..726417+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048014 ID=TCONS_00048014|Name=TCONS_00048014|organism=Clytia hemisphaerica|type=transcript|length=16352bp|location=Sequence derived from alignment at scaffold_14:710066..726417+ (Clytia hemisphaerica)
CATCAAGTCACATAATTAATGCAacgaaattgaaattgaaatatggCAAA
TAAATTATCGAACATACAACTAGTggatttcactgaaataaagTTGTTGA
ATGAGCTAGATGAGAAAACTTCAAGATATTTGTGTCAGCTATGTGGCAGC
TTAATGAAGAACCCGATCCAGACTTTTCAAGGAAATTCAGCGTGTCTCGA
ATGTTACAAAGAAGCTTTAAAAAGGTactaaatttttctaatttcttttg
ttttcaaacttctgaattttaaattttgagagtGCTCAATAAAGATATAT
CTTCCGTACCTTTTTTGCACAAGTCCATTTTCTGAATATTTAACTTTTCt
tccaaaaaattgaaactttctgtctttttttatttgtccaCTACacgatt
ctttttttataagaaaagttgtttttccatttcatcatgaatattcttaa
ctttttggggaaaattatcctagaatattcttacaacattctttATGTTA
TGAAACCCCTGTGTCACACACCCACTGGCACcccagacccactggaaaat
atgacaaaaatttcgttcTCGGTGGGAAAATATCCTAGAATTTCAGCTCC
ACAGGGACattcactttgatttcatcccgctcggaattcaatgtttaaaa
atgacATTCCACTCACttcactccaaaaccatttCCACTGAATTTTtgaa
ccttggaacaataaaatttctatccccgttGGGATttaaataggaatttt
tatacTCATTaagggaaaaagttccactggggctgcgagacaggggtgtg
ttatGATCCAAATTCACCCAAAATTTAACATTAATACATGTACCTGAAAA
ATGAAATGGTATTTTCATGAAAACTTTGAGCATCACGGGGATCATTGGca
atttacatttaaaaatgctttaaaaaatatggcattcttaggttcagttg
ccaaataTCCACGGTGGTGATGTTCTTAGCAAATTCTAAatgttttgacc
aatttcatcatgagtTTTCTTCTGTAAAAGTGTGAAGAGAACACTGACAA
catttcaatttgtttttcaaCAGGAACGAGGGGAAACAGTGTCCACTGGA
TGGCTCACCCATCGTTGAATCAAAGAATAATTTCTTCAAAGATAGAGCCA
AGGAAATGGAAATACTGAACTTGAATTGTTATTGTTTGCAACGGGAGAAT
GGATGCCAGTGGACTGGAACTATTTGTGATATGATCAAGGTAAGTGAATC
ATTTGGATGATTTCTTCTGGTTTTTAAGACCATGTTAGACTACTTTTTAC
ATAattggctcttccagaaaatgttccggggggtagtgaaaaatccacaa
aatttgccttgtctgggggtaaacttgctctgtttgagggtaattctGCT
CTGTTTTAGggaaattttgaatgtccagggagTCAACTAACGCTTGTGTG
GGAGGGGAATGTCACAATTCCCGCGGGTAAATTTACAAAAAGTCTTATAT
CCTCCCTCTATGTTTTAAATACAGCCCCTTCCATATATATTACCTCTACA
ATTGAATGTCTGCTTCTCGAACAGGCTCTggaatagatcttatcggagtt
tttgatttttctaaaaaagcgatgcattgtgggattgtttcggggatATT
ACAATGTATTACAAAAtatcttaggaattcctcgagggagtTCTATTGTA
ATaatcccgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaa
actccgataagatttattttgaaagctTGGAGACATGTTATATGTCTTTC
TGTAACCTTGTAAAATAATTTCGATTTATAAACTaaaaaagtctattcac
gataagtgtgcactcttttttcttttacctataacttttgaagtaattct
tcaatctttataaatttggtatcattggaaagatattagtgagtggaaca
atttgaaataaaaaaatctttaaaaaaattctaaaaatgaagatgaaaat
gaagaagaaaaaaatgaagatcttgtagagaagtgctataactttcattt
ttactgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgcgtttttagacgtcaatcaccttataac
tttgtttgatatcttttgactgaatgattatttttgagaatttttttcac
agtgatgacgttcgatgatcgaggatttacttcagtgaaaatgatagtta
taccacttttctacaagatcttcctttttttcttcttcattttcatcttc
atttttagaatttttttaaagattttttatttcaaattgttccactcact
aatatctttccattgataccaaatttataaagattgaagaattacttcaa
aagttataggtaaaagaaaaaagagtgcacacttatcgtggaTAGACTTT
AGCAATATTGCCGTTGGTCCAATGAATGATCTTGTTGGGGAAAGGATCCG
GGGTTATTCCCCGATCTAACGAGTTTTTTCCCGAGTGATCAAGTGGCTTA
ATTGTACCTTTTTGAAGCCAACCCCTTTTACTATAGCCAATACCTTCCGA
CTAAACCAAATTTTTCAACAATGAAAGAGGCTAAAATTCGTCTCATAGAC
TACTTTTACGCCGTCCTTAAATTACGCCAGCGACGAAAAATAacaccaat
aagggccggcTTAAAAAGGGCGATAAGGAACTCTTAAAAACCAAGGATGT
TGAAGGTCCTTGCCGTCACCGATCGAACTAAATGAccttccatttaacag
caaaacaaacatttaaaaaatcaaagtttacACGCACCGTTATTTAGGTg
catgcccgcgcggcaatttgataaACTTCAGATTCTaggtccgtgtttcg
gcttcctgTAACTATTTTGCTGTTCACTGGGTACCATACTGAATTCCAAT
GAAGGTGGCCTTAGTGCACTGCACTttagaactttaaaaaaaataagaaa
ttgttaagggactgctcaggctgagaataagaaaacaagtaaGGAACAga
gtagtctagcaagctagacgactaattcagatataNtttgttttgagagt
ttgttattgcttgattagtctagcaagctagacgactaattcagatatag
tagaaataaaacaaaaagtaatggagggaacaaactaatattatcccgta
acaattatcgtattatcatataacgcctatactactgtattacacgcatt
ataaacgactccagtttaGGAACAGAGAGTTAAACTTGAACTTGTTCACA
TTTACAAAAGTCTAAACAAAAAGATGACAAgatattgacaaaaaaacatt
ttcgtactttttcaaagcgggctacacggctttttgcgcactgcaattgg
ttcttttcgcatgacgacgggcctacactacccagagttgcccgtcgtta
ggaaaattcattgtgacgtcactttttcaaaggaaatgaacaatgcgttg
acatcatttctctcattttttgtttctgacgtcagtaaataaacaatttt
tgatctcttttcccttgttttttggacctacctggacactgacctttata
taccctggacaaagcttctcaatcccagccaagaaaaatctttgatcgga
gttttttgaaaattggtaccctaatgttggcactactcgatagcggtgta
aatgcatcgagagcgctaggtctactttttctcaaattcttttgatgatg
tagcggcttTAGAAGTTaatttttagcattgcaatggcttctccttgggt
accaattctaaaaaaactccaatcaaagatggcagatattgcttggtcca
gggttatataaaggtcagtgacctGGAGgcataaattaacctttgtccgt
ccgtccgtccgttcgtccgtccgtctgttcgtcgtctgttaccagctttt
ctcgagattggctcattagttttttctgatttttggcacaatgatgcaaa
atggtaatgcccaaattgtgatggagcccgattttcgaaaaaaaatcatt
tccggccgaaaatgccggaaatatgccggaaaaaccggttttttggcatt
ttctcgagatttcatcattagtttttcagattttttgcacaaagatgcgt
attagcaatgccccaAACATGGAAGAGTCCgatctttgagaaaaattctt
ttccgtccgaaaaagccggaaatatgccggaaatcgccgtttttgcagat
tttcatcggactttttccttatacttcgttgttttttcacacaaaaccat
tattaatagcaatgtccacgatcaagcatggttcaattgtcgacgaaact
gatttttgaagccggaattttctaaaaatcgccggaacagccgattttcg
ccggaaaacgGTATGCGAgctttactttatattttttatgaaattttgca
cactgatgcaaaatgacaatacctaaaaagtgactgagcccgattttcga
aaaagattttttttctggccgaaaatgccggaaatatgtcgtaaaagttg
ttttttttggcattttctcgagattttatctagttttttctgattttttg
ctcaaagatgcgtattaatattgcccaaaacatggccgagtctgattttt
gagaaaaattttttcgccgtttttctggattttcattgggctttttcctt
atCATTGGTTAttgtttcattcaaaaacattattaatagcaatgcccacc
atcaagtatgtttcaattttcaataaaattgatttttgaagccggaacta
tttaaaaatcgccggaacaacctattttcgactgaaagacagtatttctt
gaattactcgagctgtactttatatttttttatgaaattttgcacactga
tgcaatatgacaatacctaaaatgtgacggagcccgattttcgaaaaaca
ttttttctggccgaaaatgccggaaatatgccggaaaaaccgttttttta
acattttctagaattttcatctttaattttttctgatttttttgcagaaa
gatgcgtattcgcaatgctcaaaacatggctgagttcgatttttgagaaa
tctttttttccggttgaaaatgtcggaaatcgccgtttttgcagattttc
attagatttttttccttgtatttctatgtttttgacgcaaaaacattatt
gataacaatgctcaccatcaagcatgattcaattgtcaataaaactgatt
tttgcgaccagaactttctatttattttttccctacaacccttccctctc
cccttaTCAACAataaatgatgaatttattgcgttatgcattttcgctaa
acgctatattttctgactgatttttttctcctcgcattgctatctaactt
tcatcatcatcagataggtccattcagcatctagcttgtttcgctttatt
ttgctatttttcctggataaagcgctaaaaatcagtcgaagctgaaggaa
acggttaacaaatacaataatgaccggttagtgagggctgtactgaaaat
attgccctcggtcaacgcaacaacctcgcaagttCGGTCGTTGCTTGACC
TCGTGCAATATTTCTCAGTcggccctcactaaccggtcattattgtataa
GTGTTAAATGACGTGCATGCCTTCAACTCTTATGTGCCTGACAACAGTTT
GAatatttattgatgtcactttACAAAATAACGGATTGTTTACATAACAA
TGTTATTGATTTAATAATGGAATGCAAAATTACCATAGCAACAGAGGAAT
CTTTGTTGAATTGttataaactttttaaattgcCTTGACAAGTTCCTCAA
ATGGAGATTTATCAAGTTTATACTGCCGAGAAGTacttgcacgtttttta
taagaacataaggcttcgatggccgaaatattaagaacattctaaggcct
tgaacttttgatttaaactattttattacatacatacatcTGATGATCGG
CTCAGGTATGAAACAGCCTgttatgttttaatttttttaaagaaaaacaa
attttgaatttagctcTCTCTACCcttggtatagagcactttgtCACCAC
AAATTACTGATgttgttaaacatttttattaCAATTAATAGAGACATAAT
TGCAAATTCATTCCACGCAATTGCAGAAACTGTTGCGAGACATTTTTGAA
CGAGAAAGATCATTTAACAACGTGTGTTTCGTTAATCAAAGAAGGTGATT
GTTTTTTCAAGCAAGTTGGCTGTCATTTCAAGGtaagatattttcttttt
tcttttttgggaaaTGTTTCGGAATTTCAGGAGCCTGccatatttcaaat
tccttcaTTTTGCAATTGTTGAACCTTTAGCATTTGGTCTCTTTCGATCT
ATTTAATTTATACAGTACAGTACATTCGACTCTCTCTATCTACTTCGATC
TTGAAAAGACCATGAAATTTCTTCGGATTAGGGAAAGGTTCGAATTGCAG
AGAGAATTTAACGTTGGAGATAGATAAAGTTGACTGCAATTTAATATCTC
AAAATTCCAttgattttgctgaaaaatttaggTGTTATTTAATATTCCTT
ATTCAACTTAAACAAGTTTGCTTAAAGTTTGAGcgtttgagattttttaa
atttttttgatttttttttcaacttgaaGTGATAAAGCgatgatacacgc
ttttttttataagaatggtgtaaatccatttcatcatggatattcttaac
ttttttgggaaaatcatgctgaaatattcttacagcatttttattacttg
ggggtaattggcaatttataatttaaaatgctctaaaaatgacattctta
gcatGAGTATCAAAATTCCATGaaggtgatattcttagcattttcttatt
ttttggccattttcatcatggacattcttataaagtgtattcttatttaa
aaaaaaagcgtgtaacccTTTAAAAAGGAGGTGTCCTGAAAATTGCAGAA
AGGGAGGAGGCGTGTTAGCAAAGTTCTTTGGACTTAGTTCTTTAAATTTC
TAGTATTGCAGTCTTGGACTGggttaaaatcctaaaaaaatcgTTTGCTT
GCTTCGATTGCAATCTATTTTAACCAATCTTCAGAAGGGATACTGTGAAT
AGACTGAAAAGCGCCTTCATTTTAGTTAATACTGGTGGTGGATAATGTCT
TAAAAGTGGTAAAAAAATCCCGATGATACCTCGATTTTAAGGGGGGCTCC
ATCAAATCCTAATAggatacccctgtgtcacaaaccgGCTGGGAGCCCAG
CCCCGctgtaaaaatttacaaaagtttcgtccccggtgggaaaatacctt
agaatttcagccccacttggaaattaGCTTTTAGTTTGAACCCCattcat
tcgaaattcaatgttaaaaattgcacttcaaaaccattgcAACTAAATCT
TTGAACCTTGgaacaaaggaatttctatccccattgggatttcaatacga
atttttatccccactgagaaaaatattccaccggggctgtgagacagggg
tataaccTACTGTAGAGGGGGTAGCTATAGATTGGGATAGTGAGTTAGTG
GAAGTACATCGATTTGTGAAGCGTCTTTACGTCACATAGAATAAAAGAAA
ATGgcaaaagaacaaaagaattcCCCATAGCCCCAATTTCGAATCCTCAT
ATcgaataaagcatcttctgaaaatttcattcttccccataaatgcgaaa
aatgaaaaacgaatacgaatctttttacaaaagaatATGTAATTTTGTTT
ATTAGGGTACTATAGTTAGATCTGGGACGTTCCTCAAGATTATCTCAGAT
CATTTGAGATTATCTCATTACCATGACGTTACCATGTTTCTCTTAAGCCG
TCAGCAACAAAATTAAGCATCATTTCACTCCAGTAACCCACACGGATGAG
CAATTCCAATACACAAATTTTccattagcagattcatgtaaaaagtcacg
aaaaaacgtcgagtaaaaagctctgattggctaaaaattcCTAacacaaa
catttttttctcaaaatgttcaaattatgaggtaatctttgcatgtcTCA
GCTAATCAGATCTTTATTCAACGTTTGTTTGTGACTTTGTTACATGAATC
TGCCAATAGGAAAATTATGTATTACACGCACGATGCTCCTCCCCGCGTGC
GAATCAGATTGGTGGCGACGAAgaagattttcgatttttcacccttattt
tatttgaatgaaaaatatatttattagGGGGGTGCATGCTACGTTATTCA
ACGTTATATTTATCAAGGACTAACATTCAGTGCAAATACGTATGTATTCA
CATTGACCTGAGTTTGACAGCGAACACTTAACATAGGACTGAAATGAGAT
TCGACTTTCGCACTGCTAGTGCAACCGTTCAACTGACTAAGCTATCTAGA
ATTCTTTTGAAGTACATTCGCGGGGAACAGCGTCGGTTCTTTTTATACGA
TTGTCTTATTGTTACGGTACACAAATTCCTcgataaacgtttttttataa
gaggaaactataaggcttcgatggccaagaTACTAAGAACTCTAAAACGG
ACCCTAAAACACCTATTTtatttgaaactcaaaaagttaagaacgtcaaa
agactttatgttcttataaaaaaaacttgtacgTGATCATTTAGATGCCT
ACACATTTCAGTGTCAATGAACTTGTGAAAAAGTTTTCTATGGGAAAAAA
GTCATGGTGACAGACAAATGTCATTATTCgacttttattggaattactCA
ACGATTTTTGTATCTATGACGATGCCATAACGATATCATTTTACATGTAG
AAATTCAATAATCAACTGATTAACAACGATTGTCTAGCTTTTACCAGGCA
GAGGTTTTTTCCCTCACTGTTCGTTAGTTGATTGTTAAACTTTACTGGTG
TCATTTTCGTGTTAAAGAAGACCTAAATGTAAACAGACCCATAACTAATG
AGAGAATAATCACGTGGTAGGCTTAGGTTAAAAGGATAATTTTGCCTCAA
ACCCACGATCAGAAAGTGACAAAGCAAGTTTGGTCATAATTGTTAAAGTC
ACCCTGTTAAAGATTAACCCTtttcaggcaagagaaattgaagccactta
ttcccCATCCAAAACTTGCATAGAAGAATAGAACGCACCGTAATCATGAC
Gatgtggttcctttgttttggaggactactttttttgaaatctagcatag
attttagttttaatccggcgtttttgtaaaaactacgcgcggacGTTCTA
TGGATGAGAAAGAAGTGGTTTTATTtcggagtctcgcctctagcccttcg
ggcttgaaactcaaaggttttcatacaaacgccTTATTGAAAGTTTTATA
ATCGCCAGTGATTTCGAATTATATGCCgcctgaaaacaaaagaaacgcTT
GATTCGCAATCCGTTATTAGAGATTTCATTTGCTTGTCGTTCCAAAAGCG
ACACAAatcttaaggcttggggacacggtaagctttttttcgcgttggtg
caatgcaacatactccatccaacctgaaacgctttttcgtgtctccaccc
catttttctttctaccaataaaagtgaaatctcacttttgtccctgggac
aatcaGCGTGTCCTCACTTTtttcccatgaaacaaaaaaagaaaccatgg
gactttttttcttgtgttggtagGATAGATCATGTTGCATTGCTccaacg
tgaaaaaaacttctcgtgtccccaagccttaaggcttcactttttcttgt
tcgagaaaagttttaaactcaatgaggCGTCCTCGTTATTAACtgtcttt
ttctttctctctaTATCAACTGTTATAATCATCGTTTTAAATCTCATTAC
GTAAATTTTGATAGTTCATCTCTGTTATCATCACTTCTTAACCTGGTTAA
ATTCCTGTGATTCAAAGGTTAAAAGGTTTTAATCACTGTAATTTGTATAA
CTTTTGTCGTCAATTGATATAGTCATCATACAAGATTGTAATAGTGCAcg
ctttttctttataagaatatactttataagaatgttgttTATggtgaaat
tggccaaaatcatcatggaatttggtgactgaacctaagaatgcccattt
ttagagcatttacTATTGAATTGCCAATTATTCACCAGCAATGCTAAAAG
TTTCCACAAAATGCCTGGGTTGGGATCCAAACCTAAGAATGCCGTAACAA
CATTCCAGTATGATTTTTcgcaaaaagttaagaatattcatcataaattg
aaaaaacaccattcttataaaaaaaagtgtgtaattCAGCTTCTTGTTGA
CAATCATTACTGGTCATTATACGTGATTGAAAGCCACAGTGTTGGCTTAT
TGTTACATTATTATGTTATGAAATTACAAGTATTACAGTTTGATTAGAGT
ATATAATTTTGTTAGAGTTTTTTACAACTTGATTTGTGAAGGAgtttgag
ttttgttttgttCGCTAACAGTTGTTGACTGTGTCTCAGAGAAAAGAAAG
TAGAGAACTTTGTAGAAGTTGGTTATCACAGAATGATATAACATGTTCAA
ATCGGTGAATGTCTTTAATTAaccatcactctgatacaagagtatgggga
gaTATGGTGGACATTGGATGTGGTGTGGTGATGGTAATAGTCATATGTAT
GTATTTCATCATGAGTATTTTTAACTCATATGTtcaaatttcctaaaatt
tggtccattttttccaaattttggtttgattttcaccaaattttggtcaa
aatttttggaaatcgtggccctttgagagagaaattttagattttcgtga
ttttgggaccctttcagagactaacttttgaatttgtacccctttgagag
acttttaaGGAATGAGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTTTTAGATCGCATCATGGAGTAGCCAATAACATTTCCACGG
TGTTCAGCATTTCATGATAATCGTTACCGTGTTAAGAGTTAATGAAATGG
TCAGTAAAATATTCGTTAGTTCTGAAGATCTTTTGGATTACATCATGGAA
TAGCCAATTATATTTCCACAATGCAAGAAGTTTTATCTCAGCATTTTTTG
ATaattagatttaaaaaaagtttcattCGCTGTGCTGTAACTTTCCATTA
CGAATACACGAGTTTCGAATAAGAAAACCATCTGATTGGATAACTTGTTA
TTGCAcactctttcattttttcatgcAAATTTCGCAGAATCCAATCAAAA
GATTGATTTGAGCAACACGCGTATCGGAGCTTCTCCAATAGCAGGAAGTA
GGAAGAATATTATAGCTTAACTTGCAGCGTGGGAAGAGAAAAAATCCTAA
ATTAGGCTAATTTTTCCATACCACGTTGAAAGAGAGTCACTTTTTAACAA
ATTAGCTTTTTATCTATGCGGAAGTTTTGGACCATAAATCACGGAAGTGA
AAGTTAGAAACGGGTATTTTCACCACGAGCTAATAGTGgaagaaacaaat
aaaaactcGGAAACGTATCCATTGTTCTTCAGTTTTAGGTTATAGCGTGT
GATAAAAACGCTTTATAATTAAGCTTGTGGGAAGAGAAAATACTACGACT
AAATGCTTCATCAGCAAGCCGTGAGACCgaattcaatataaaaattaACC
ACCGCATAGTCCTCTGATACTTACATTGAAACTAAGCTGTCATGACAAGA
TGATATCTGAAATTAAGTATATTGGTTCCTCGATAGATTACTGAAAAGTT
ACTTTATTACACCTGTATGATCCTTTAGCTAGTCTTGCTGAAGGTCTAAA
TGAAGGGCGAATAATCTGACGACTGCAACATCTTTTTTGTAAGGACTTTG
AATTGTTACAAATGAATTGGGAGCGACAAAATTATAACCAGAATTGTGTT
GCCTTATTGGAAGCTTGGTCTTATACCTTTTTTCgttagatttttttcta
cagCTGTGCACAGCGTCCGTACGATAATTATGGTCTGATACCAAACTTAA
TCATGGGTTTAGATTTCACGATTGTAGCACCTGATCTCACGACTGGACAT
CTGTCAATTTTATTTGCTTCTTCATTATGGATTGTAAAAACAGACAAATA
CAATGTCAATTTAGTTTGTTCAAGTGACTCTCAGCTGTGATATAATTAGT
CATACCTCACGCCACATCTTTGCAACTCTTTCACCTTCATATTGATACAG
TTATATCATTAGATTTGCACGCGTGTTTCTTTAGAAACTAATGAAATAAT
GATCGAGTCTTTAGATAATCACATGGTTGATTTTAGAAGATAAAAGCTGT
GTAGTCCATATTATCCAAAGTGCAGTaccagtagcgtagccaagcagggt
gcaaaatttgtgtaggagaacagtttttatgacactgtaatcatctattc
ataatattaaaatataattacagtgtcataaaaatctgctttcctacaca
aattttgcgccctcTGGCTACGCTACTGAAGTGTTTATTCCTTGTTTGTA
GTATCAAAAGGTTTTGATGTTGCTTGGGAGGGTCTACGTATCTGTTAAAT
CTTAAGTACTTTTATTAGCTTATTCTTAATTAGTCATTTTAATCTGTAAG
CATAAACCCTGGTTACTATGTGATCTCTGTTAGAGTATCTGACTGGGTTT
GGGGATTGCTTTAAAGGTAGTTTTCATCCAGATTTTGATTATTATGATTA
GTATGTTGAGTTTCGAGCATATAGCGATTGGCTGTGTAAAACTCTCCCAC
TTTTGCTGGTTCGATTGCAAAAGCATTAGGGGAAAACTATGTAACTTTTG
GTCAAGATTATGTCATTTTATTATAACTGCTGAACATGTGATTGAACAAG
GATTGAATACACGATAATGTAACTAAAGTGAAACTCTTTGCTTTTGAAAT
AAACTTTGAGTGCACTGGGGTAATTTGAGACTGCTCTTACTTCTCAGGAA
GTTATTTGAAACAGAAAGTAACACAATTTCgttgtttttactttttatgg
GTATTAAACTGATGCTGATGTACGTTTTAGCAGTCATGCTACAAATTTAG
TAAAATGTATTCATATCAATTGATTAGGGCATCACATCAACAATGatgca
attttcgaaaaaaaaagccACAACCTCTTTTCATTATGACGTCAACAAGC
TACTTGATAAAAGGAAATTATTACAGTACCAAGTTCAATAGTGTAATGCC
AAACGGGTATAGCTTGGTTATGTTAtgttataaaaattaaaaaagaattt
catttttttgttatgTTCAAGTTGTACTTTGGGACCACTGAGATTTATAT
GGACTACTGAAAGGTAGTTTCTCAATCCACTCACctgacacacaacgttc
tttcaacgtcaatttaacgttcacaacgtccattcaACGCcagatgaatg
ttgaaacaacgttgtgtgtcagatGTGCAggcaaagcaaaatcttttgat
tagagtttttttaaaagtggtaccctaatagTATCACTACTCGATAGGGC
TGTAGAAGCATCGAGAGCGCTACTTACTTTTTGTTAGCTGTttatgatgt
agcgccgtttgaaTAACGTAAAGACAAGATTTCTTTATAACCGTTGACCT
CGTTAGAAccattaaaaaggaaaaataaccaAGTTTCTCAGTCACTTTAC
ATATcactttgtttttgttgattttctctGTTGATCATTCTATTTTCCTT
TTTACTAGCCAGGAAAATGGTGATTGTAAAGCTCTTACAAAAACCTTTTC
AACATTGAGATAAGTGTCTATAGTAGTAAACAATATCTTTAGGCCTAATT
GTGAATCATTACGGCTCGGTGTTATTTTAATCTAGAGTTTTAAGAACAGC
TATATTAGATTATCGGAAGAGCTTTTAATGGGCTTGAATTGGAACTCAAC
GTGATAGTCATCATATATCATTTATCAGTTatggtttttttcttttgctt
tttcatACTTTTTCTTCGCAATTTTCTTCCGCCAATCTATTATTTTCCTC
ACGTAAAGGTTGTGATATTTTCCTGTTAGACAGGACATGATAAGCTATTT
AAAGGATGTGCACAAGAAAAAACTATTTCATTTCTAGGGGATTTTCTAGC
GAACACTCGCAGAAGAAgtacttcattttcatttttattcaatcaaagtg
aatttttgttgtAAACGTTCAAGCTCATCATTTATTTACATTGTTTTCAG
CGATAACGTATTCAAAGCAACTGTATTTTTCTTTcccgaattttcttcga
atttttcTTATGAGGTAGTTTGATTTTGTACGAGGTGAAATTGTCCTAAC
TATATAGGGGATATCTTCGCGTACAAAAATGCTGCAAATGTGCAATTCTA
TATTCAGGTTTTTCTGTTTTGCACCAGTGTGTTCGCTGTGTTTTACCCAA
AAAACAGTTGAGACATTGTTTTAATTGTAAATGGAAAAGTGAAAGTGCAA
ACTTAAAgattcttaaaaattttcatttttttcaacagGCAATAAATAAA
GAAGATATGGCGAAACACGTTATAGAACATTCAGAGATACATCAATCAGT
TTACGAAACAGACGAACAACGAAACATGGAGATAAAACACCTTCTAAACG
AAAACAAGAAACTCAAACAAACAGTTGACCAGTTAACCCAAAGATTGAAA
AATGTGGAAGAGAACTCGAACCAACAAAACAATGATTTATTAGATGCCAT
AGCTGAACTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCTGAAGGTC
TTACGGCTACCATTACGGAATCTGTCAAGACTAACACTGAGAATATAAGT
GATTTGGATTTGAAATTCCAACTACATGAGAACTCAGTTGATGATGGTCA
CTTAGTTTGGAAAGTTAACAATTTTCACCAAAGAACGACTGATGCAATCG
TTGGCAAAACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAGCAAGTAT
GGATACAAGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTATGGGTAA
AGGAACACACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACA
ACATTTTGGAATGgcctttccaaaagaaaatcaaattcactTTGGTCAAT
CAAGAAGACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGA
TTCATCAAGCTTtcaaaaaccaaagaaagaTATGAACATTGCTTCAGGTT
GTCCAATGTTTATGAATTTGAACAGATTGCAGCCTGAAGGATTTTTAAAG
GACGACTCTTTATTTGTCGAAGTTAGAATAGATTAAACTACAGTACCAAA
TTTTTAAGGTGAAGATTTTGAGAGTAAATAAGACATcgaacttatttttt
ttcacgTATTCTATCTTTTgctataagaacacgaggctgaaaattggcct
gaaactaagaacaaattgagaacaatctgagcctcaaatttcagaaatta
ccaAGACATCTTTAACATATTCTCaactcattttaagtttttatggAAAA
AATCTAAATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaacatttca
aaaaattaagaacagcccaacctgagccaaaatttactggttcttataaa
aaagtgtgtattttaAAAAGACTTctcatttttcttgattttttatcTGA
TAGCAAGCGTAAGGAAAGCCAGTTCATACAAACATACcgtttttggtttg
attttagaTAAAATATCCACACGGGTAcatgttttttacaaaaacaaaat
atataagaacatatagctttgatggtcaaaatattaaggaCACCTTAATA
ACACCTTTAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaatc
aacaaaaatactcaaaaaatgatgaaaataagaacatgtcaagaacattt
ttagtctcGAAACTcaagaaagttaagaacaccagaagtcttcaaaattt
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048014-exon-scaffold_14-1491911889:710066..710289 | TCONS_00048014-exon-scaffold_14-1491911889:710066..710289 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1510915933:710066..710289 | TCONS_00048014-exon-scaffold_14-1510915933:710066..710289 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1575043694:710066..710289 | TCONS_00048014-exon-scaffold_14-1575043694:710066..710289 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1491911889:711139..711304 | TCONS_00048014-exon-scaffold_14-1491911889:711139..711304 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1510915933:711139..711304 | TCONS_00048014-exon-scaffold_14-1510915933:711139..711304 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1575043694:711139..711304 | TCONS_00048014-exon-scaffold_14-1575043694:711139..711304 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1491911889:716407..716547 | TCONS_00048014-exon-scaffold_14-1491911889:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1510915933:716407..716547 | TCONS_00048014-exon-scaffold_14-1510915933:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1575043694:716407..716547 | TCONS_00048014-exon-scaffold_14-1575043694:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1491911889:724954..726417 | TCONS_00048014-exon-scaffold_14-1491911889:724954..726417 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1510915933:724954..726417 | TCONS_00048014-exon-scaffold_14-1510915933:724954..726417 | Clytia hemisphaerica | exon |
| TCONS_00048014-exon-scaffold_14-1575043694:724954..726417 | TCONS_00048014-exon-scaffold_14-1575043694:724954..726417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:710066..726417 + |
Blast
BLAST of TCONS_00048014 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 5.551e-53 Identity = 148/524 (28.24%), Postives = 252/524 (48.09%), Query Frame = 1
Query: 124 RYLCQLCGSLMKNPIQTFQGNSACLECYKEALKRNEGKQCPLDGSPIVESKNNFFKDRAKEMEILNLNCYCLQRENG----------------------------------------------CQWTGTICD---------MIKRH---NCKFIPRNCRNCC--ETFLNEK--DHLTTCVSLIKEGDCFFKQVGCHFKAINKEDMA-------KHV---------------------IEHSEIHQSVYETDEQRNMEI---KHLLNENKK----LKQTVDQLTQRLK-----------NVEENSNQQNN--DLLDAIAELA---KRSGQPAPDSEGLTATIT---ESVKTNTENISDLDLKFQLHENSVDDGHLVWKVNNFHQRTTDAIVGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSEYDNILEWPFQKKIKFTLVNQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVRID*TTVPN 1344
+Y C+ C ++ +P QT G+ C C AL + +C IV K+ FKD + EIL L YC G C++ C +++H +C + +C + C +T L + HL+ CV+ C FK+ GC F+ N++ A +HV +E ++ QS++ +EI K +L N+ L++ +D ++LK N EE + +++ L + + EL K +GQ A ++ L + ++ + + + ++D+DL+FQ+ E + +G L+WK+ ++ +R +A++GKT +L+S P +T +GYK C R+YL+GDGMGKGTHLSLF V+M+ EYD +L WPF++K+ L++Q S+ H+ F P+ +SSSF+KP +MNIASGCP+F+ L+ ++KDD++F++V +D + +P+
Sbjct: 50 KYKCEKCHLVLCSPKQTECGHRFCESCMA-ALLSSSSPKCTACQESIV--KDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVN--APSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPD 567
The following BLAST results are available for this feature:
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