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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048016 ID=TCONS_00048016|Name=TCONS_00048016|organism=Clytia hemisphaerica|type=transcript|length=1991bp
GGAGAATGGATGCCAGTGGACTGGAACTATTTGTGATATGATCAAGAGAC
ATAATTGCAAATTCATTCCACGCAATTGCAGAAACTGTTGCGAGACATTT
TTGAACGAGAAAGATCATTTAACAACGTGTGTTTCGTTAATCAAAGAAGG
TGATTGTTTTTTCAAGCAAGTTGGCTGTCATTTCAAGGCAATAAATAAAG
AAGATATGGCGAAACACGTTATAGAACATTCAGAGATACATCAATCAGTT
TACGAAACAGACGAACAACGAAACATGGAGATAAAACACCTTCTAAACGA
AAACAAGAAACTCAAACAAACAGTTGACCAGTTAACCCAAAGATTGAAAA
ATGTGGAAGAGAACTCGAACCAACAAAACAATGATTTATTAGATGCCATA
GCTGAACTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCTGAAGGTCT
TACGGCTACCATTACGGAATCTGTCAAGACTAACACTGAGAATATAAGTG
ATTTGGATTTGAAATTCCAACTACATGAGAACTCAGTTGATGATGGTCAC
TTAGTTTGGAAAGTTAACAATTTTCACCAAAGAACGACTGATGCAATCGT
TGGCAAAACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAGCAAGTATG
GATACAAGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAA
GGAACACACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAA
CATTTTGGAATGgcctttccaaaagaaaatcaaattcactTTGGTCAATC
AAGAAGACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGAT
TCATCAAGCTTtcaaaaaccaaagaaagaTATGAACATTGCTTCAGGTTG
TCCAATGTTTATGAATTTGAACAGATTGCAGCCTGAAGGATTTTTAAAGG
ACGACTCTTTATTTGTCGAAGTTAGAATAGATTAAACTACAGTACCAAAT
TTTTAAGGTGAAGATTTTGAGAGTAAATAAGACATcgaacttattttttt
tcacgTATTCTATCTTTTgctataagaacacgaggctgaaaattggcctg
aaactaagaacaaattgagaacaatctgagcctcaaatttcagaaattac
caAGACATCTTTAACATATTCTCaactcattttaagtttttatggAAAAA
ATCTAAATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaacatttcaa
aaaattaagaacagcccaacctgagccaaaatttactggttcttataaaa
aagtgtgtattttaAAAAGACTTctcatttttcttgattttttatcTGAT
AGCAAGCGTAAGGAAAGCCAGTTCATACAAACATACcgtttttggtttga
ttttagaGAAAATATCCACACGGGTACatgttttttacaagaacaaaata
tataagaacatatagcttcgatggtcaaaatattaagaacaccTTAATAA
CACTTTTAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaatca
acaaaaattctcaaaaaatgatgaaaataagaacatgtcaagaacatttt
tagtcttGAAACTcaagaaagttaagaacaccagaattcttcaaaatttt
cgaatattcttataaaaaaacgtttatttcAATAAAGATTTTAGTTAATT
AACTAtttatgatttatgagaagtttatTTGCATCAACAAGCattcttat
tttgaaaatatatttaataaaaatattattctAGGCTCTAGGTTTTTTCA
CTGTacataatttttttcagattttcttgtattttgtTAATTCGAATTTT
ACATCGTATGTCACATCTAGAAAATATGccatataaatttttttgaagat
cttGTTTTTTATTAGCTTTATGATGATATCCATTTGATTTATTTATACCt
agtttttgttattttaaacaatttattccatgaaattaaga Run BLAST on NCBI transcript from alignment at scaffold_14:711259..727316+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048016 ID=TCONS_00048016|Name=TCONS_00048016|organism=Clytia hemisphaerica|type=transcript|length=16058bp|location=Sequence derived from alignment at scaffold_14:711259..727316+ (Clytia hemisphaerica)
GGAGAATGGATGCCAGTGGACTGGAACTATTTGTGATATGATCAAGGTAA
GTGAATCATTTGGATGATTTCTTCTGGTTTTTAAGACCATGTTAGACTAC
TTTTTACATAattggctcttccagaaaatgttccggggggtagtgaaaaa
tccacaaaatttgccttgtctgggggtaaacttgctctgtttgagggtaa
ttctGCTCTGTTTTAGggaaattttgaatgtccagggagTCAACTAACGC
TTGTGTGGGAGGGGAATGTCACAATTCCCGCGGGTAAATTTACAAAAAGT
CTTATATCCTCCCTCTATGTTTTAAATACAGCCCCTTCCATATATATTAC
CTCTACAATTGAATGTCTGCTTCTCGAACAGGCTCTggaatagatcttat
cggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcgg
ggatATTACAATGTATTACAAAAtatcttaggaattcctcgagggagtTC
TATTGTAATaatcccgaaacaatcccacaatgcatcgcttttttagaaaa
atcaaaaactccgataagatttattttgaaagctTGGAGACATGTTATAT
GTCTTTCTGTAACCTTGTAAAATAATTTCGATTTATAAACTaaaaaagtc
tattcacgataagtgtgcactcttttttcttttacctataacttttgaag
taattcttcaatctttataaatttggtatcattggaaagatattagtgag
tggaacaatttgaaataaaaaaatctttaaaaaaattctaaaaatgaaga
tgaaaatgaagaagaaaaaaatgaagatcttgtagagaagtgctataact
ttcatttttactgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgtttttagacgtcaatcacc
ttataactttgtttgatatcttttgactgaatgattatttttgagaattt
ttttcacagtgatgacgttcgatgatcgaggatttacttcagtgaaaatg
atagttataccacttttctacaagatcttcctttttttcttcttcatttt
catcttcatttttagaatttttttaaagattttttatttcaaattgttcc
actcactaatatctttccattgataccaaatttataaagattgaagaatt
acttcaaaagttataggtaaaagaaaaaagagtgcacacttatcgtggaT
AGACTTTAGCAATATTGCCGTTGGTCCAATGAATGATCTTGTTGGGGAAA
GGATCCGGGGTTATTCCCCGATCTAACGAGTTTTTTCCCGAGTGATCAAG
TGGCTTAATTGTACCTTTTTGAAGCCAACCCCTTTTACTATAGCCAATAC
CTTCCGACTAAACCAAATTTTTCAACAATGAAAGAGGCTAAAATTCGTCT
CATAGACTACTTTTACGCCGTCCTTAAATTACGCCAGCGACGAAAAATAa
caccaataagggccggcTTAAAAAGGGCGATAAGGAACTCTTAAAAACCA
AGGATGTTGAAGGTCCTTGCCGTCACCGATCGAACTAAATGAccttccat
ttaacagcaaaacaaacatttaaaaaatcaaagtttacACGCACCGTTAT
TTAGGTgcatgcccgcgcggcaatttgataaACTTCAGATTCTaggtccg
tgtttcggcttcctgTAACTATTTTGCTGTTCACTGGGTACCATACTGAA
TTCCAATGAAGGTGGCCTTAGTGCACTGCACTttagaactttaaaaaaaa
taagaaattgttaagggactgctcaggctgagaataagaaaacaagtaaG
GAACAgagtagtctagcaagctagacgactaattcagatataNtttgttt
tgagagtttgttattgcttgattagtctagcaagctagacgactaattca
gatatagtagaaataaaacaaaaagtaatggagggaacaaactaatatta
tcccgtaacaattatcgtattatcatataacgcctatactactgtattac
acgcattataaacgactccagtttaGGAACAGAGAGTTAAACTTGAACTT
GTTCACATTTACAAAAGTCTAAACAAAAAGATGACAAgatattgacaaaa
aaacattttcgtactttttcaaagcgggctacacggctttttgcgcactg
caattggttcttttcgcatgacgacgggcctacactacccagagttgccc
gtcgttaggaaaattcattgtgacgtcactttttcaaaggaaatgaacaa
tgcgttgacatcatttctctcattttttgtttctgacgtcagtaaataaa
caatttttgatctcttttcccttgttttttggacctacctggacactgac
ctttatataccctggacaaagcttctcaatcccagccaagaaaaatcttt
gatcggagttttttgaaaattggtaccctaatgttggcactactcgatag
cggtgtaaatgcatcgagagcgctaggtctactttttctcaaattctttt
gatgatgtagcggcttTAGAAGTTaatttttagcattgcaatggcttctc
cttgggtaccaattctaaaaaaactccaatcaaagatggcagatattgct
tggtccagggttatataaaggtcagtgacctGGAGgcataaattaacctt
tgtccgtccgtccgtccgttcgtccgtccgtctgttcgtcgtctgttacc
agcttttctcgagattggctcattagttttttctgatttttggcacaatg
atgcaaaatggtaatgcccaaattgtgatggagcccgattttcgaaaaaa
aatcatttccggccgaaaatgccggaaatatgccggaaaaaccggttttt
tggcattttctcgagatttcatcattagtttttcagattttttgcacaaa
gatgcgtattagcaatgccccaAACATGGAAGAGTCCgatctttgagaaa
aattcttttccgtccgaaaaagccggaaatatgccggaaatcgccgtttt
tgcagattttcatcggactttttccttatacttcgttgttttttcacaca
aaaccattattaatagcaatgtccacgatcaagcatggttcaattgtcga
cgaaactgatttttgaagccggaattttctaaaaatcgccggaacagccg
attttcgccggaaaacgGTATGCGAgctttactttatattttttatgaaa
ttttgcacactgatgcaaaatgacaatacctaaaaagtgactgagcccga
ttttcgaaaaagattttttttctggccgaaaatgccggaaatatgtcgta
aaagttgttttttttggcattttctcgagattttatctagttttttctga
ttttttgctcaaagatgcgtattaatattgcccaaaacatggccgagtct
gatttttgagaaaaattttttcgccgtttttctggattttcattgggctt
tttccttatCATTGGTTAttgtttcattcaaaaacattattaatagcaat
gcccaccatcaagtatgtttcaattttcaataaaattgatttttgaagcc
ggaactatttaaaaatcgccggaacaacctattttcgactgaaagacagt
atttcttgaattactcgagctgtactttatatttttttatgaaattttgc
acactgatgcaatatgacaatacctaaaatgtgacggagcccgattttcg
aaaaacattttttctggccgaaaatgccggaaatatgccggaaaaaccgt
ttttttaacattttctagaattttcatctttaattttttctgattttttt
gcagaaagatgcgtattcgcaatgctcaaaacatggctgagttcgatttt
tgagaaatctttttttccggttgaaaatgtcggaaatcgccgtttttgca
gattttcattagatttttttccttgtatttctatgtttttgacgcaaaaa
cattattgataacaatgctcaccatcaagcatgattcaattgtcaataaa
actgatttttgcgaccagaactttctatttattttttccctacaaccctt
ccctctccccttaTCAACAataaatgatgaatttattgcgttatgcattt
tcgctaaacgctatattttctgactgatttttttctcctcgcattgctat
ctaactttcatcatcatcagataggtccattcagcatctagcttgtttcg
ctttattttgctatttttcctggataaagcgctaaaaatcagtcgaagct
gaaggaaacggttaacaaatacaataatgaccggttagtgagggctgtac
tgaaaatattgccctcggtcaacgcaacaacctcgcaagttCGGTCGTTG
CTTGACCTCGTGCAATATTTCTCAGTcggccctcactaaccggtcattat
tgtataaGTGTTAAATGACGTGCATGCCTTCAACTCTTATGTGCCTGACA
ACAGTTTGAatatttattgatgtcactttACAAAATAACGGATTGTTTAC
ATAACAATGTTATTGATTTAATAATGGAATGCAAAATTACCATAGCAACA
GAGGAATCTTTGTTGAATTGttataaactttttaaattgcCTTGACAAGT
TCCTCAAATGGAGATTTATCAAGTTTATACTGCCGAGAAGTacttgcacg
ttttttataagaacataaggcttcgatggccgaaatattaagaacattct
aaggccttgaacttttgatttaaactattttattacatacatacatcTGA
TGATCGGCTCAGGTATGAAACAGCCTgttatgttttaatttttttaaaga
aaaacaaattttgaatttagctcTCTCTACCcttggtatagagcactttg
tCACCACAAATTACTGATgttgttaaacatttttattaCAATTAATAGAG
ACATAATTGCAAATTCATTCCACGCAATTGCAGAAACTGTTGCGAGACAT
TTTTGAACGAGAAAGATCATTTAACAACGTGTGTTTCGTTAATCAAAGAA
GGTGATTGTTTTTTCAAGCAAGTTGGCTGTCATTTCAAGGtaagatattt
tcttttttcttttttgggaaaTGTTTCGGAATTTCAGGAGCCTGccatat
ttcaaattccttcaTTTTGCAATTGTTGAACCTTTAGCATTTGGTCTCTT
TCGATCTATTTAATTTATACAGTACAGTACATTCGACTCTCTCTATCTAC
TTCGATCTTGAAAAGACCATGAAATTTCTTCGGATTAGGGAAAGGTTCGA
ATTGCAGAGAGAATTTAACGTTGGAGATAGATAAAGTTGACTGCAATTTA
ATATCTCAAAATTCCAttgattttgctgaaaaatttaggTGTTATTTAAT
ATTCCTTATTCAACTTAAACAAGTTTGCTTAAAGTTTGAGcgtttgagat
tttttaaatttttttgatttttttttcaacttgaaGTGATAAAGCgatga
tacacgcttttttttataagaatggtgtaaatccatttcatcatggatat
tcttaacttttttgggaaaatcatgctgaaatattcttacagcattttta
ttacttgggggtaattggcaatttataatttaaaatgctctaaaaatgac
attcttagcatGAGTATCAAAATTCCATGaaggtgatattcttagcattt
tcttattttttggccattttcatcatggacattcttataaagtgtattct
tatttaaaaaaaaagcgtgtaacccTTTAAAAAGGAGGTGTCCTGAAAAT
TGCAGAAAGGGAGGAGGCGTGTTAGCAAAGTTCTTTGGACTTAGTTCTTT
AAATTTCTAGTATTGCAGTCTTGGACTGggttaaaatcctaaaaaaatcg
TTTGCTTGCTTCGATTGCAATCTATTTTAACCAATCTTCAGAAGGGATAC
TGTGAATAGACTGAAAAGCGCCTTCATTTTAGTTAATACTGGTGGTGGAT
AATGTCTTAAAAGTGGTAAAAAAATCCCGATGATACCTCGATTTTAAGGG
GGGCTCCATCAAATCCTAATAggatacccctgtgtcacaaaccgGCTGGG
AGCCCAGCCCCGctgtaaaaatttacaaaagtttcgtccccggtgggaaa
ataccttagaatttcagccccacttggaaattaGCTTTTAGTTTGAACCC
CattcattcgaaattcaatgttaaaaattgcacttcaaaaccattgcAAC
TAAATCTTTGAACCTTGgaacaaaggaatttctatccccattgggatttc
aatacgaatttttatccccactgagaaaaatattccaccggggctgtgag
acaggggtataaccTACTGTAGAGGGGGTAGCTATAGATTGGGATAGTGA
GTTAGTGGAAGTACATCGATTTGTGAAGCGTCTTTACGTCACATAGAATA
AAAGAAAATGgcaaaagaacaaaagaattcCCCATAGCCCCAATTTCGAA
TCCTCATATcgaataaagcatcttctgaaaatttcattcttccccataaa
tgcgaaaaatgaaaaacgaatacgaatctttttacaaaagaatATGTAAT
TTTGTTTATTAGGGTACTATAGTTAGATCTGGGACGTTCCTCAAGATTAT
CTCAGATCATTTGAGATTATCTCATTACCATGACGTTACCATGTTTCTCT
TAAGCCGTCAGCAACAAAATTAAGCATCATTTCACTCCAGTAACCCACAC
GGATGAGCAATTCCAATACACAAATTTTccattagcagattcatgtaaaa
agtcacgaaaaaacgtcgagtaaaaagctctgattggctaaaaattcCTA
acacaaacatttttttctcaaaatgttcaaattatgaggtaatctttgca
tgtcTCAGCTAATCAGATCTTTATTCAACGTTTGTTTGTGACTTTGTTAC
ATGAATCTGCCAATAGGAAAATTATGTATTACACGCACGATGCTCCTCCC
CGCGTGCGAATCAGATTGGTGGCGACGAAgaagattttcgatttttcacc
cttattttatttgaatgaaaaatatatttattagGGGGGTGCATGCTACG
TTATTCAACGTTATATTTATCAAGGACTAACATTCAGTGCAAATACGTAT
GTATTCACATTGACCTGAGTTTGACAGCGAACACTTAACATAGGACTGAA
ATGAGATTCGACTTTCGCACTGCTAGTGCAACCGTTCAACTGACTAAGCT
ATCTAGAATTCTTTTGAAGTACATTCGCGGGGAACAGCGTCGGTTCTTTT
TATACGATTGTCTTATTGTTACGGTACACAAATTCCTcgataaacgtttt
tttataagaggaaactataaggcttcgatggccaagaTACTAAGAACTCT
AAAACGGACCCTAAAACACCTATTTtatttgaaactcaaaaagttaagaa
cgtcaaaagactttatgttcttataaaaaaaacttgtacgTGATCATTTA
GATGCCTACACATTTCAGTGTCAATGAACTTGTGAAAAAGTTTTCTATGG
GAAAAAAGTCATGGTGACAGACAAATGTCATTATTCgacttttattggaa
ttactCAACGATTTTTGTATCTATGACGATGCCATAACGATATCATTTTA
CATGTAGAAATTCAATAATCAACTGATTAACAACGATTGTCTAGCTTTTA
CCAGGCAGAGGTTTTTTCCCTCACTGTTCGTTAGTTGATTGTTAAACTTT
ACTGGTGTCATTTTCGTGTTAAAGAAGACCTAAATGTAAACAGACCCATA
ACTAATGAGAGAATAATCACGTGGTAGGCTTAGGTTAAAAGGATAATTTT
GCCTCAAACCCACGATCAGAAAGTGACAAAGCAAGTTTGGTCATAATTGT
TAAAGTCACCCTGTTAAAGATTAACCCTtttcaggcaagagaaattgaag
ccacttattcccCATCCAAAACTTGCATAGAAGAATAGAACGCACCGTAA
TCATGACGatgtggttcctttgttttggaggactactttttttgaaatct
agcatagattttagttttaatccggcgtttttgtaaaaactacgcgcgga
cGTTCTATGGATGAGAAAGAAGTGGTTTTATTtcggagtctcgcctctag
cccttcgggcttgaaactcaaaggttttcatacaaacgccTTATTGAAAG
TTTTATAATCGCCAGTGATTTCGAATTATATGCCgcctgaaaacaaaaga
aacgcTTGATTCGCAATCCGTTATTAGAGATTTCATTTGCTTGTCGTTCC
AAAAGCGACACAAatcttaaggcttggggacacggtaagctttttttcgc
gttggtgcaatgcaacatactccatccaacctgaaacgctttttcgtgtc
tccaccccatttttctttctaccaataaaagtgaaatctcacttttgtcc
ctgggacaatcaGCGTGTCCTCACTTTtttcccatgaaacaaaaaaagaa
accatgggactttttttcttgtgttggtagGATAGATCATGTTGCATTGC
Tccaacgtgaaaaaaacttctcgtgtccccaagccttaaggcttcacttt
ttcttgttcgagaaaagttttaaactcaatgaggCGTCCTCGTTATTAAC
tgtctttttctttctctctaTATCAACTGTTATAATCATCGTTTTAAATC
TCATTACGTAAATTTTGATAGTTCATCTCTGTTATCATCACTTCTTAACC
TGGTTAAATTCCTGTGATTCAAAGGTTAAAAGGTTTTAATCACTGTAATT
TGTATAACTTTTGTCGTCAATTGATATAGTCATCATACAAGATTGTAATA
GTGCAcgctttttctttataagaatatactttataagaatgttgttTATg
gtgaaattggccaaaatcatcatggaatttggtgactgaacctaagaatg
cccatttttagagcatttacTATTGAATTGCCAATTATTCACCAGCAATG
CTAAAAGTTTCCACAAAATGCCTGGGTTGGGATCCAAACCTAAGAATGCC
GTAACAACATTCCAGTATGATTTTTcgcaaaaagttaagaatattcatca
taaattgaaaaaacaccattcttataaaaaaaagtgtgtaattCAGCTTC
TTGTTGACAATCATTACTGGTCATTATACGTGATTGAAAGCCACAGTGTT
GGCTTATTGTTACATTATTATGTTATGAAATTACAAGTATTACAGTTTGA
TTAGAGTATATAATTTTGTTAGAGTTTTTTACAACTTGATTTGTGAAGGA
gtttgagttttgttttgttCGCTAACAGTTGTTGACTGTGTCTCAGAGAA
AAGAAAGTAGAGAACTTTGTAGAAGTTGGTTATCACAGAATGATATAACA
TGTTCAAATCGGTGAATGTCTTTAATTAaccatcactctgatacaagagt
atggggagaTATGGTGGACATTGGATGTGGTGTGGTGATGGTAATAGTCA
TATGTATGTATTTCATCATGAGTATTTTTAACTCATATGTtcaaatttcc
taaaatttggtccattttttccaaattttggtttgattttcaccaaattt
tggtcaaaatttttggaaatcgtggccctttgagagagaaattttagatt
ttcgtgattttgggaccctttcagagactaacttttgaatttgtacccct
ttgagagacttttaaGGAATGAGAAAAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTTTTAGATCGCATCATGGAGTAGCCAATAACATT
TCCACGGTGTTCAGCATTTCATGATAATCGTTACCGTGTTAAGAGTTAAT
GAAATGGTCAGTAAAATATTCGTTAGTTCTGAAGATCTTTTGGATTACAT
CATGGAATAGCCAATTATATTTCCACAATGCAAGAAGTTTTATCTCAGCA
TTTTTTGATaattagatttaaaaaaagtttcattCGCTGTGCTGTAACTT
TCCATTACGAATACACGAGTTTCGAATAAGAAAACCATCTGATTGGATAA
CTTGTTATTGCAcactctttcattttttcatgcAAATTTCGCAGAATCCA
ATCAAAAGATTGATTTGAGCAACACGCGTATCGGAGCTTCTCCAATAGCA
GGAAGTAGGAAGAATATTATAGCTTAACTTGCAGCGTGGGAAGAGAAAAA
ATCCTAAATTAGGCTAATTTTTCCATACCACGTTGAAAGAGAGTCACTTT
TTAACAAATTAGCTTTTTATCTATGCGGAAGTTTTGGACCATAAATCACG
GAAGTGAAAGTTAGAAACGGGTATTTTCACCACGAGCTAATAGTGgaaga
aacaaataaaaactcGGAAACGTATCCATTGTTCTTCAGTTTTAGGTTAT
AGCGTGTGATAAAAACGCTTTATAATTAAGCTTGTGGGAAGAGAAAATAC
TACGACTAAATGCTTCATCAGCAAGCCGTGAGACCgaattcaatataaaa
attaACCACCGCATAGTCCTCTGATACTTACATTGAAACTAAGCTGTCAT
GACAAGATGATATCTGAAATTAAGTATATTGGTTCCTCGATAGATTACTG
AAAAGTTACTTTATTACACCTGTATGATCCTTTAGCTAGTCTTGCTGAAG
GTCTAAATGAAGGGCGAATAATCTGACGACTGCAACATCTTTTTTGTAAG
GACTTTGAATTGTTACAAATGAATTGGGAGCGACAAAATTATAACCAGAA
TTGTGTTGCCTTATTGGAAGCTTGGTCTTATACCTTTTTTCgttagattt
ttttctacagCTGTGCACAGCGTCCGTACGATAATTATGGTCTGATACCA
AACTTAATCATGGGTTTAGATTTCACGATTGTAGCACCTGATCTCACGAC
TGGACATCTGTCAATTTTATTTGCTTCTTCATTATGGATTGTAAAAACAG
ACAAATACAATGTCAATTTAGTTTGTTCAAGTGACTCTCAGCTGTGATAT
AATTAGTCATACCTCACGCCACATCTTTGCAACTCTTTCACCTTCATATT
GATACAGTTATATCATTAGATTTGCACGCGTGTTTCTTTAGAAACTAATG
AAATAATGATCGAGTCTTTAGATAATCACATGGTTGATTTTAGAAGATAA
AAGCTGTGTAGTCCATATTATCCAAAGTGCAGTaccagtagcgtagccaa
gcagggtgcaaaatttgtgtaggagaacagtttttatgacactgtaatca
tctattcataatattaaaatataattacagtgtcataaaaatctgctttc
ctacacaaattttgcgccctcTGGCTACGCTACTGAAGTGTTTATTCCTT
GTTTGTAGTATCAAAAGGTTTTGATGTTGCTTGGGAGGGTCTACGTATCT
GTTAAATCTTAAGTACTTTTATTAGCTTATTCTTAATTAGTCATTTTAAT
CTGTAAGCATAAACCCTGGTTACTATGTGATCTCTGTTAGAGTATCTGAC
TGGGTTTGGGGATTGCTTTAAAGGTAGTTTTCATCCAGATTTTGATTATT
ATGATTAGTATGTTGAGTTTCGAGCATATAGCGATTGGCTGTGTAAAACT
CTCCCACTTTTGCTGGTTCGATTGCAAAAGCATTAGGGGAAAACTATGTA
ACTTTTGGTCAAGATTATGTCATTTTATTATAACTGCTGAACATGTGATT
GAACAAGGATTGAATACACGATAATGTAACTAAAGTGAAACTCTTTGCTT
TTGAAATAAACTTTGAGTGCACTGGGGTAATTTGAGACTGCTCTTACTTC
TCAGGAAGTTATTTGAAACAGAAAGTAACACAATTTCgttgtttttactt
tttatggGTATTAAACTGATGCTGATGTACGTTTTAGCAGTCATGCTACA
AATTTAGTAAAATGTATTCATATCAATTGATTAGGGCATCACATCAACAA
TGatgcaattttcgaaaaaaaaagccACAACCTCTTTTCATTATGACGTC
AACAAGCTACTTGATAAAAGGAAATTATTACAGTACCAAGTTCAATAGTG
TAATGCCAAACGGGTATAGCTTGGTTATGTTAtgttataaaaattaaaaa
agaatttcatttttttgttatgTTCAAGTTGTACTTTGGGACCACTGAGA
TTTATATGGACTACTGAAAGGTAGTTTCTCAATCCACTCACctgacacac
aacgttctttcaacgtcaatttaacgttcacaacgtccattcaACGCcag
atgaatgttgaaacaacgttgtgtgtcagatGTGCAggcaaagcaaaatc
ttttgattagagtttttttaaaagtggtaccctaatagTATCACTACTCG
ATAGGGCTGTAGAAGCATCGAGAGCGCTACTTACTTTTTGTTAGCTGTtt
atgatgtagcgccgtttgaaTAACGTAAAGACAAGATTTCTTTATAACCG
TTGACCTCGTTAGAAccattaaaaaggaaaaataaccaAGTTTCTCAGTC
ACTTTACATATcactttgtttttgttgattttctctGTTGATCATTCTAT
TTTCCTTTTTACTAGCCAGGAAAATGGTGATTGTAAAGCTCTTACAAAAA
CCTTTTCAACATTGAGATAAGTGTCTATAGTAGTAAACAATATCTTTAGG
CCTAATTGTGAATCATTACGGCTCGGTGTTATTTTAATCTAGAGTTTTAA
GAACAGCTATATTAGATTATCGGAAGAGCTTTTAATGGGCTTGAATTGGA
ACTCAACGTGATAGTCATCATATATCATTTATCAGTTatggtttttttct
tttgctttttcatACTTTTTCTTCGCAATTTTCTTCCGCCAATCTATTAT
TTTCCTCACGTAAAGGTTGTGATATTTTCCTGTTAGACAGGACATGATAA
GCTATTTAAAGGATGTGCACAAGAAAAAACTATTTCATTTCTAGGGGATT
TTCTAGCGAACACTCGCAGAAGAAgtacttcattttcatttttattcaat
caaagtgaatttttgttgtAAACGTTCAAGCTCATCATTTATTTACATTG
TTTTCAGCGATAACGTATTCAAAGCAACTGTATTTTTCTTTcccgaattt
tcttcgaatttttcTTATGAGGTAGTTTGATTTTGTACGAGGTGAAATTG
TCCTAACTATATAGGGGATATCTTCGCGTACAAAAATGCTGCAAATGTGC
AATTCTATATTCAGGTTTTTCTGTTTTGCACCAGTGTGTTCGCTGTGTTT
TACCCAAAAAACAGTTGAGACATTGTTTTAATTGTAAATGGAAAAGTGAA
AGTGCAAACTTAAAgattcttaaaaattttcatttttttcaacagGCAAT
AAATAAAGAAGATATGGCGAAACACGTTATAGAACATTCAGAGATACATC
AATCAGTTTACGAAACAGACGAACAACGAAACATGGAGATAAAACACCTT
CTAAACGAAAACAAGAAACTCAAACAAACAGTTGACCAGTTAACCCAAAG
ATTGAAAAATGTGGAAGAGAACTCGAACCAACAAAACAATGATTTATTAG
ATGCCATAGCTGAACTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCT
GAAGGTCTTACGGCTACCATTACGGAATCTGTCAAGACTAACACTGAGAA
TATAAGTGATTTGGATTTGAAATTCCAACTACATGAGAACTCAGTTGATG
ATGGTCACTTAGTTTGGAAAGTTAACAATTTTCACCAAAGAACGACTGAT
GCAATCGTTGGCAAAACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAG
CAAGTATGGATACAAGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTA
TGGGTAAAGGAACACACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAA
TATGACAACATTTTGGAATGgcctttccaaaagaaaatcaaattcactTT
GGTCAATCAAGAAGACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAA
ACAAAGATTCATCAAGCTTtcaaaaaccaaagaaagaTATGAACATTGCT
TCAGGTTGTCCAATGTTTATGAATTTGAACAGATTGCAGCCTGAAGGATT
TTTAAAGGACGACTCTTTATTTGTCGAAGTTAGAATAGATTAAACTACAG
TACCAAATTTTTAAGGTGAAGATTTTGAGAGTAAATAAGACATcgaactt
attttttttcacgTATTCTATCTTTTgctataagaacacgaggctgaaaa
ttggcctgaaactaagaacaaattgagaacaatctgagcctcaaatttca
gaaattaccaAGACATCTTTAACATATTCTCaactcattttaagttttta
tggAAAAAATCTAAATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaa
catttcaaaaaattaagaacagcccaacctgagccaaaatttactggttc
ttataaaaaagtgtgtattttaAAAAGACTTctcatttttcttgattttt
tatcTGATAGCAAGCGTAAGGAAAGCCAGTTCATACAAACATACcgtttt
tggtttgattttagaTAAAATATCCACACGGGTAcatgttttttacaaaa
acaaaatatataagaacatatagctttgatggtcaaaatattaaggaCAC
CTTAATAACACCTTTAGGCTTTACGGAATTTGAAACGGCCGACTCCttag
aaaaatcaacaaaaatactcaaaaaatgatgaaaataagaacatgtcaag
aacatttttagtctcGAAACTcaagaaagttaagaacaccagaagtcttc
aaaattttctgatattcttataaaaaaaagtttatttcaatAAAGATTTT
AGTTAATTAACTAtttatgatttatgagaagtttaNtacggtgtgacggg
attgacccttttttagtacggtattacgggatttgacgaaaaaagagacg
ggaaaacggtattttaaaatcagacggggACGGTNNcggtgtgacggtgt
tattatttttccaattttcgggattccgggattcagcaaaaattttgacg
ggaaaacggtatttcgaacccctacaaacccccctcAGTTCATACAAACA
TACcgtttttggtttgattttagaGAAAATATCCACACGGGTACatgttt
tttacaagaacaaaatatataagaacatatagcttcgatggtcaaaatat
taagaacaccTTAATAACACTTTTAGGCTTTACGGAATTTGAAACGGCCG
ACTCCttagaaaaatcaacaaaaattctcaaaaaatgatgaaaataagaa
catgtcaagaacatttttagtcttGAAACTcaagaaagttaagaacacca
gaattcttcaaaattttcgaatattcttataaaaaaacgtttatttcAAT
AAAGATTTTAGTTAATTAACTAtttatgatttatgagaagtttatTTGCA
TCAACAAGCattcttattttgaaaatatatttaataaaaatattattctA
GGCTCTAGGTTTTTTCACTGTacataatttttttcagattttcttgtatt
ttgtTAATTCGAATTTTACATCGTATGTCACATCTAGAAAATATGccata
taaatttttttgaagatcttGTTTTTTATTAGCTTTATGATGATATCCAT
TTGATTTATTTATACCtagtttttgttattttaaacaatttattccatga
aattaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048016-exon-scaffold_14-1491911889:711259..711304 | TCONS_00048016-exon-scaffold_14-1491911889:711259..711304 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1510915933:711259..711304 | TCONS_00048016-exon-scaffold_14-1510915933:711259..711304 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1575043694:711259..711304 | TCONS_00048016-exon-scaffold_14-1575043694:711259..711304 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1491911889:716407..716547 | TCONS_00048016-exon-scaffold_14-1491911889:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1510915933:716407..716547 | TCONS_00048016-exon-scaffold_14-1510915933:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1575043694:716407..716547 | TCONS_00048016-exon-scaffold_14-1575043694:716407..716547 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1491911889:724954..726148 | TCONS_00048016-exon-scaffold_14-1491911889:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1510915933:724954..726148 | TCONS_00048016-exon-scaffold_14-1510915933:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1575043694:724954..726148 | TCONS_00048016-exon-scaffold_14-1575043694:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1491911889:726708..727316 | TCONS_00048016-exon-scaffold_14-1491911889:726708..727316 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1510915933:726708..727316 | TCONS_00048016-exon-scaffold_14-1510915933:726708..727316 | Clytia hemisphaerica | exon |
| TCONS_00048016-exon-scaffold_14-1575043694:726708..727316 | TCONS_00048016-exon-scaffold_14-1575043694:726708..727316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:711259..727316 + |
Blast
BLAST of TCONS_00048016 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 4.310e-51 Identity = 115/350 (32.86%), Postives = 198/350 (56.57%), Query Frame = 2
Query: 116 HLTTCVSLIKEGDCFFKQVGCHFKAINKEDMA-------KHV---------------------IEHSEIHQSVYETDEQRNMEI---KHLLNENKK----LKQTVDQLTQRLK-----------NVEENSNQQNN--DLLDAIAELA---KRSGQPAPDSEGLTATIT---ESVKTNTENISDLDLKFQLHENSVDDGHLVWKVNNFHQRTTDAIVGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSEYDNILEWPFQKKIKFTLVNQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVRID*TTVPN 1000
HL+ CV+ C FK+ GC F+ N++ A +HV +E ++ QS++ +EI K +L N+ L++ +D ++LK N EE + +++ L + + EL K +GQ A ++ L + ++ + + + ++D+DL+FQ+ E + +G L+WK+ ++ +R +A++GKT +L+S P +T +GYK C R+YL+GDGMGKGTHLSLF V+M+ EYD +L WPF++K+ L++Q S+ H+ F P+ +SSSF+KP +MNIASGCP+F+ L+ ++KDD++F++V +D + +P+
Sbjct: 221 HLSECVN--APSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPD 567
The following BLAST results are available for this feature:
|
