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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048018 ID=TCONS_00048018|Name=TCONS_00048018|organism=Clytia hemisphaerica|type=transcript|length=1893bp
AATGTCTTTAATTAaccatcactctgatacaagagtatggggagaTATGG
TGGACATTGGATGTGGTGTGGTGATGGTAATAGTCATATGCAATAAATAA
AGAAGATATGGCGAAACACGTTATAGAACATTCAGAGATACATCAATCAG
TTTACGAAACAGACGAACAACGAAACATGGAGATAAAACACCTTCTAAAC
GAAAACAAGAAACTCAAACAAACAGTTGACCAGTTAACCCAAAGATTGAA
AAATGTGGAAGAGAACTCGAACCAACAAAACAATGATTTATTAGATGCCA
TAGCTGAACTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCTGAAGGT
CTTACGGCTACCATTACGGAATCTGTCAAGACTAACACTGAGAATATAAG
TGATTTGGATTTGAAATTCCAACTACATGAGAACTCAGTTGATGATGGTC
ACTTAGTTTGGAAAGTTAACAATTTTCACCAAAGAACGACTGATGCAATC
GTTGGCAAAACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAGCAAGTA
TGGATACAAGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTATGGGTA
AAGGAACACACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGAC
AACATTTTGGAATGgcctttccaaaagaaaatcaaattcactTTGGTCAA
TCAAGAAGACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAG
ATTCATCAAGCTTtcaaaaaccaaagaaagaTATGAACATTGCTTCAGGT
TGTCCAATGTTTATGAATTTGAACAGATTGCAGCCTGAAGGATTTTTAAA
GGACGACTCTTTATTTGTCGAAGTTAGAATAGATTAAACTACAGTACCAA
ATTTTTAAGGTGAAGATTTTGAGAGTAAATAAGACATcgaacttattttt
tttcacgTATTCTATCTTTTgctataagaacacgaggctgaaaattggcc
tgaaactaagaacaaattgagaacaatctgagcctcaaatttcagaaatt
accaAGACATCTTTAACATATTCTCaactcattttaagtttttatggAAA
AAATCTAAATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaacatttc
aaaaaattaagaacagcccaacctgagccaaaatttactggttcttataa
aaaagtgtgtattttaAAAAGACTTctcatttttcttgattttttatcTG
ATAGCAAGCGTAAGGAAAGCCAGTTCATACAAACATACcgtttttggttt
gattttagaGAAAATATCCACACGGGTACatgttttttacaagaacaaaa
tatataagaacatatagcttcgatggtcaaaatattaagaacaccTTAAT
AACACTTTTAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaat
caacaaaaattctcaaaaaatgatgaaaataagaacatgtcaagaacatt
tttagtcttGAAACTcaagaaagttaagaacaccagaattcttcaaaatt
ttcgaatattcttataaaaaaacgtttatttcAATAAAGATTTTAGTTAA
TTAACTAtttatgatttatgagaagtttatTTGCATCAACAAGCattctt
attttgaaaatatatttaataaaaatattattctAGGCTCTAGGTTTTTT
CACTGTacataatttttttcagattttcttgtattttgtTAATTCGAATT
TTACATCGTATGTCACATCTAGAAAATATGccatataaatttttttgaag
atcttGTTTTTTATTAGCTTTATGATGATATCCATTTGATTTATTTATAC
Ctagtttttgttattttaaacaatttattccatgaaattaaga Run BLAST on NCBI transcript from alignment at scaffold_14:720873..727316+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048018 ID=TCONS_00048018|Name=TCONS_00048018|organism=Clytia hemisphaerica|type=transcript|length=6444bp|location=Sequence derived from alignment at scaffold_14:720873..727316+ (Clytia hemisphaerica)
AATGTCTTTAATTAaccatcactctgatacaagagtatggggagaTATGG
TGGACATTGGATGTGGTGTGGTGATGGTAATAGTCATATGTATGTATTTC
ATCATGAGTATTTTTAACTCATATGTtcaaatttcctaaaatttggtcca
ttttttccaaattttggtttgattttcaccaaattttggtcaaaattttt
ggaaatcgtggccctttgagagagaaattttagattttcgtgattttggg
accctttcagagactaacttttgaatttgtacccctttgagagactttta
aGGAATGAGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCTTTTAGATCGCATCATGGAGTAGCCAATAACATTTCCACGGTGTTCAG
CATTTCATGATAATCGTTACCGTGTTAAGAGTTAATGAAATGGTCAGTAA
AATATTCGTTAGTTCTGAAGATCTTTTGGATTACATCATGGAATAGCCAA
TTATATTTCCACAATGCAAGAAGTTTTATCTCAGCATTTTTTGATaatta
gatttaaaaaaagtttcattCGCTGTGCTGTAACTTTCCATTACGAATAC
ACGAGTTTCGAATAAGAAAACCATCTGATTGGATAACTTGTTATTGCAca
ctctttcattttttcatgcAAATTTCGCAGAATCCAATCAAAAGATTGAT
TTGAGCAACACGCGTATCGGAGCTTCTCCAATAGCAGGAAGTAGGAAGAA
TATTATAGCTTAACTTGCAGCGTGGGAAGAGAAAAAATCCTAAATTAGGC
TAATTTTTCCATACCACGTTGAAAGAGAGTCACTTTTTAACAAATTAGCT
TTTTATCTATGCGGAAGTTTTGGACCATAAATCACGGAAGTGAAAGTTAG
AAACGGGTATTTTCACCACGAGCTAATAGTGgaagaaacaaataaaaact
cGGAAACGTATCCATTGTTCTTCAGTTTTAGGTTATAGCGTGTGATAAAA
ACGCTTTATAATTAAGCTTGTGGGAAGAGAAAATACTACGACTAAATGCT
TCATCAGCAAGCCGTGAGACCgaattcaatataaaaattaACCACCGCAT
AGTCCTCTGATACTTACATTGAAACTAAGCTGTCATGACAAGATGATATC
TGAAATTAAGTATATTGGTTCCTCGATAGATTACTGAAAAGTTACTTTAT
TACACCTGTATGATCCTTTAGCTAGTCTTGCTGAAGGTCTAAATGAAGGG
CGAATAATCTGACGACTGCAACATCTTTTTTGTAAGGACTTTGAATTGTT
ACAAATGAATTGGGAGCGACAAAATTATAACCAGAATTGTGTTGCCTTAT
TGGAAGCTTGGTCTTATACCTTTTTTCgttagatttttttctacagCTGT
GCACAGCGTCCGTACGATAATTATGGTCTGATACCAAACTTAATCATGGG
TTTAGATTTCACGATTGTAGCACCTGATCTCACGACTGGACATCTGTCAA
TTTTATTTGCTTCTTCATTATGGATTGTAAAAACAGACAAATACAATGTC
AATTTAGTTTGTTCAAGTGACTCTCAGCTGTGATATAATTAGTCATACCT
CACGCCACATCTTTGCAACTCTTTCACCTTCATATTGATACAGTTATATC
ATTAGATTTGCACGCGTGTTTCTTTAGAAACTAATGAAATAATGATCGAG
TCTTTAGATAATCACATGGTTGATTTTAGAAGATAAAAGCTGTGTAGTCC
ATATTATCCAAAGTGCAGTaccagtagcgtagccaagcagggtgcaaaat
ttgtgtaggagaacagtttttatgacactgtaatcatctattcataatat
taaaatataattacagtgtcataaaaatctgctttcctacacaaattttg
cgccctcTGGCTACGCTACTGAAGTGTTTATTCCTTGTTTGTAGTATCAA
AAGGTTTTGATGTTGCTTGGGAGGGTCTACGTATCTGTTAAATCTTAAGT
ACTTTTATTAGCTTATTCTTAATTAGTCATTTTAATCTGTAAGCATAAAC
CCTGGTTACTATGTGATCTCTGTTAGAGTATCTGACTGGGTTTGGGGATT
GCTTTAAAGGTAGTTTTCATCCAGATTTTGATTATTATGATTAGTATGTT
GAGTTTCGAGCATATAGCGATTGGCTGTGTAAAACTCTCCCACTTTTGCT
GGTTCGATTGCAAAAGCATTAGGGGAAAACTATGTAACTTTTGGTCAAGA
TTATGTCATTTTATTATAACTGCTGAACATGTGATTGAACAAGGATTGAA
TACACGATAATGTAACTAAAGTGAAACTCTTTGCTTTTGAAATAAACTTT
GAGTGCACTGGGGTAATTTGAGACTGCTCTTACTTCTCAGGAAGTTATTT
GAAACAGAAAGTAACACAATTTCgttgtttttactttttatggGTATTAA
ACTGATGCTGATGTACGTTTTAGCAGTCATGCTACAAATTTAGTAAAATG
TATTCATATCAATTGATTAGGGCATCACATCAACAATGatgcaattttcg
aaaaaaaaagccACAACCTCTTTTCATTATGACGTCAACAAGCTACTTGA
TAAAAGGAAATTATTACAGTACCAAGTTCAATAGTGTAATGCCAAACGGG
TATAGCTTGGTTATGTTAtgttataaaaattaaaaaagaatttcattttt
ttgttatgTTCAAGTTGTACTTTGGGACCACTGAGATTTATATGGACTAC
TGAAAGGTAGTTTCTCAATCCACTCACctgacacacaacgttctttcaac
gtcaatttaacgttcacaacgtccattcaACGCcagatgaatgttgaaac
aacgttgtgtgtcagatGTGCAggcaaagcaaaatcttttgattagagtt
tttttaaaagtggtaccctaatagTATCACTACTCGATAGGGCTGTAGAA
GCATCGAGAGCGCTACTTACTTTTTGTTAGCTGTttatgatgtagcgccg
tttgaaTAACGTAAAGACAAGATTTCTTTATAACCGTTGACCTCGTTAGA
AccattaaaaaggaaaaataaccaAGTTTCTCAGTCACTTTACATATcac
tttgtttttgttgattttctctGTTGATCATTCTATTTTCCTTTTTACTA
GCCAGGAAAATGGTGATTGTAAAGCTCTTACAAAAACCTTTTCAACATTG
AGATAAGTGTCTATAGTAGTAAACAATATCTTTAGGCCTAATTGTGAATC
ATTACGGCTCGGTGTTATTTTAATCTAGAGTTTTAAGAACAGCTATATTA
GATTATCGGAAGAGCTTTTAATGGGCTTGAATTGGAACTCAACGTGATAG
TCATCATATATCATTTATCAGTTatggtttttttcttttgctttttcatA
CTTTTTCTTCGCAATTTTCTTCCGCCAATCTATTATTTTCCTCACGTAAA
GGTTGTGATATTTTCCTGTTAGACAGGACATGATAAGCTATTTAAAGGAT
GTGCACAAGAAAAAACTATTTCATTTCTAGGGGATTTTCTAGCGAACACT
CGCAGAAGAAgtacttcattttcatttttattcaatcaaagtgaattttt
gttgtAAACGTTCAAGCTCATCATTTATTTACATTGTTTTCAGCGATAAC
GTATTCAAAGCAACTGTATTTTTCTTTcccgaattttcttcgaatttttc
TTATGAGGTAGTTTGATTTTGTACGAGGTGAAATTGTCCTAACTATATAG
GGGATATCTTCGCGTACAAAAATGCTGCAAATGTGCAATTCTATATTCAG
GTTTTTCTGTTTTGCACCAGTGTGTTCGCTGTGTTTTACCCAAAAAACAG
TTGAGACATTGTTTTAATTGTAAATGGAAAAGTGAAAGTGCAAACTTAAA
gattcttaaaaattttcatttttttcaacagGCAATAAATAAAGAAGATA
TGGCGAAACACGTTATAGAACATTCAGAGATACATCAATCAGTTTACGAA
ACAGACGAACAACGAAACATGGAGATAAAACACCTTCTAAACGAAAACAA
GAAACTCAAACAAACAGTTGACCAGTTAACCCAAAGATTGAAAAATGTGG
AAGAGAACTCGAACCAACAAAACAATGATTTATTAGATGCCATAGCTGAA
CTTGCAAAACGTAGTGGACAACCTGCGCCAGATTCTGAAGGTCTTACGGC
TACCATTACGGAATCTGTCAAGACTAACACTGAGAATATAAGTGATTTGG
ATTTGAAATTCCAACTACATGAGAACTCAGTTGATGATGGTCACTTAGTT
TGGAAAGTTAACAATTTTCACCAAAGAACGACTGATGCAATCGTTGGCAA
AACTAGAGCACTCCATTCTGCTCCTTGCTTCACGAGCAAGTATGGATACA
AGTTTTGCCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAAGGAACA
CACTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAACATTTT
GGAATGgcctttccaaaagaaaatcaaattcactTTGGTCAATCAAGAAG
ACAGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGATTCATCA
AGCTTtcaaaaaccaaagaaagaTATGAACATTGCTTCAGGTTGTCCAAT
GTTTATGAATTTGAACAGATTGCAGCCTGAAGGATTTTTAAAGGACGACT
CTTTATTTGTCGAAGTTAGAATAGATTAAACTACAGTACCAAATTTTTAA
GGTGAAGATTTTGAGAGTAAATAAGACATcgaacttattttttttcacgT
ATTCTATCTTTTgctataagaacacgaggctgaaaattggcctgaaacta
agaacaaattgagaacaatctgagcctcaaatttcagaaattaccaAGAC
ATCTTTAACATATTCTCaactcattttaagtttttatggAAAAAATCTAA
ATGTTAAGACCATCGTAAGAAGATAAACCTCGtgaacatttcaaaaaatt
aagaacagcccaacctgagccaaaatttactggttcttataaaaaagtgt
gtattttaAAAAGACTTctcatttttcttgattttttatcTGATAGCAAG
CGTAAGGAAAGCCAGTTCATACAAACATACcgtttttggtttgattttag
aTAAAATATCCACACGGGTAcatgttttttacaaaaacaaaatatataag
aacatatagctttgatggtcaaaatattaaggaCACCTTAATAACACCTT
TAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaatcaacaaaa
atactcaaaaaatgatgaaaataagaacatgtcaagaacatttttagtct
cGAAACTcaagaaagttaagaacaccagaagtcttcaaaattttctgata
ttcttataaaaaaaagtttatttcaatAAAGATTTTAGTTAATTAACTAt
ttatgatttatgagaagtttaNtacggtgtgacgggattgaccctttttt
agtacggtattacgggatttgacgaaaaaagagacgggaaaacggtattt
taaaatcagacggggACGGTNNcggtgtgacggtgttattatttttccaa
ttttcgggattccgggattcagcaaaaattttgacgggaaaacggtattt
cgaacccctacaaacccccctcAGTTCATACAAACATACcgtttttggtt
tgattttagaGAAAATATCCACACGGGTACatgttttttacaagaacaaa
atatataagaacatatagcttcgatggtcaaaatattaagaacaccTTAA
TAACACTTTTAGGCTTTACGGAATTTGAAACGGCCGACTCCttagaaaaa
tcaacaaaaattctcaaaaaatgatgaaaataagaacatgtcaagaacat
ttttagtcttGAAACTcaagaaagttaagaacaccagaattcttcaaaat
tttcgaatattcttataaaaaaacgtttatttcAATAAAGATTTTAGTTA
ATTAACTAtttatgatttatgagaagtttatTTGCATCAACAAGCattct
tattttgaaaatatatttaataaaaatattattctAGGCTCTAGGTTTTT
TCACTGTacataatttttttcagattttcttgtattttgtTAATTCGAAT
TTTACATCGTATGTCACATCTAGAAAATATGccatataaatttttttgaa
gatcttGTTTTTTATTAGCTTTATGATGATATCCATTTGATTTATTTATA
CCtagtttttgttattttaaacaatttattccatgaaattaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00048018-exon-scaffold_14-1491911889:720873..720961 | TCONS_00048018-exon-scaffold_14-1491911889:720873..720961 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1510915933:720873..720961 | TCONS_00048018-exon-scaffold_14-1510915933:720873..720961 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1575043694:720873..720961 | TCONS_00048018-exon-scaffold_14-1575043694:720873..720961 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1491911889:724954..726148 | TCONS_00048018-exon-scaffold_14-1491911889:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1510915933:724954..726148 | TCONS_00048018-exon-scaffold_14-1510915933:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1575043694:724954..726148 | TCONS_00048018-exon-scaffold_14-1575043694:724954..726148 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1491911889:726708..727316 | TCONS_00048018-exon-scaffold_14-1491911889:726708..727316 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1510915933:726708..727316 | TCONS_00048018-exon-scaffold_14-1510915933:726708..727316 | Clytia hemisphaerica | exon |
| TCONS_00048018-exon-scaffold_14-1575043694:726708..727316 | TCONS_00048018-exon-scaffold_14-1575043694:726708..727316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:720873..727316 + |
Blast
BLAST of TCONS_00048018 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 6.141e-50 Identity = 100/277 (36.10%), Postives = 175/277 (63.18%), Query Frame = 3
Query: 129 HSEIHQSVYETDEQRNM------EIKHLL----NENKKLKQTVDQLTQRLKNVEENSNQQNN--DLLDAIAELA---KRSGQPAPDSEGLTATIT---ESVKTNTENISDLDLKFQLHENSVDDGHLVWKVNNFHQRTTDAIVGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSEYDNILEWPFQKKIKFTLVNQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVRID*TTVPN 902
H++I E + Q+ M +I HL ++ +KLK+ ++ +N EE + +++ L + + EL K +GQ A ++ L + ++ + + + ++D+DL+FQ+ E + +G L+WK+ ++ +R +A++GKT +L+S P +T +GYK C R+YL+GDGMGKGTHLSLF V+M+ EYD +L WPF++K+ L++Q S+ H+ F P+ +SSSF+KP +MNIASGCP+F+ L+ ++KDD++F++V +D + +P+
Sbjct: 292 HNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPD 567
The following BLAST results are available for this feature:
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