TCONS_00048047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048047
Unique NameTCONS_00048047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048047 ID=TCONS_00048047|Name=TCONS_00048047|organism=Clytia hemisphaerica|type=transcript|length=1005bp
CATTTTAAGAGGAAGAGATAAGACGTAAAAACAAAACGTTAGTAAAAACG
ATAtggaaaagaagaaattttgcgTTGAAAATACTGAAGAAGTTTCGAAT
GAGTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCTTAAACA
AACTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATCAACAGA
ACCATGGAGTTGAAACTTCAGAACAAATCGCCAtgaatgaaagaatgaaa
agtgTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGATTtaga
tttgaaatttcaacTCCATGAAAACTCTGTCAATGACAGTCATTTGATTT
GGAAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATTGGCAAG
ACGAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAAAATGgcctttcc
aaaagaaaatcaaattcactTTGATCAATCAAGAAGACCGAAGTAAAGAT
CATGTGGAGAAAATGTTTCCAAACAAAGATtcatcaagctttcagaaacc
AAAGAAAGATATGAACATTGCTTCAGGTTGTCCAATGTTTATGAATTTGA
ACAGATTGCAACCTGAAGGATTTTTAAAGGACGACTCTTTATTTGTCGAA
GTTAAAATAGATTAAGTTTTACGATATTTAGTACTTTTTAAGTAATTGTT
AANCTCAAACCTGAAGGATTTTTAAGGGATGACTCTTTATTTGTCGAGGT
CAAAATAGATTAATATTATGATAAACACAGCGGGGtgtgaaaagatattt
tacaaataaaaaatagttaTTCATGTATATTTTCGTAAATATAACAGAAA
ATAAAACTTActaaatttgaatgaaaaatttgtaTGCAATAAATATTATA
TAATGGAAATACGAAAAATTACGTAAAAATTATATTAAGCATTTTTTAAG
ATCAATTTTATACActttaaaacacaaaaaagaaATCTAGGATTTTAGTA
TTTTT
Run BLAST on NCBI

protein sequence of TCONS_00048047-protein

>TCONS_00048047-protein ID=TCONS_00048047-protein|Name=TCONS_00048047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MEKKKFCVENTEEVSNEFESLQKLFQENENLKQTVANLVKRLFIIENQQN
HGVETSEQIAMNERMKSVEETTRINIESIGDLDLKFQLHENSVNDSHLIW
KINNFQQRTTDAVIGKTRALHSAPCFTSKMAFPKENQIHFDQSRRPK
Run BLAST on NCBI

transcript from alignment at scaffold_14:754710..755827-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048047 ID=TCONS_00048047|Name=TCONS_00048047|organism=Clytia hemisphaerica|type=transcript|length=1118bp|location=Sequence derived from alignment at scaffold_14:754710..755827- (Clytia hemisphaerica)
CATTTTAAGAGGAAGAGATAAGACGTAAAAACAAAACGTTAGTAAAAACG
ATATGGAAAAGAAGAAATTTTGCGTTGAAAATACTGAAGAAGTTTCGAAT
GAGTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCTTAAACA
AACTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATCAACAGA
ACCATGGAGTTGAAACTTCAGAACAAATCGCCATGAATGAAAGAATGAAA
AGTGTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGATTTAGA
TTTGAAATTTCAACTCCATGAAAACTCTGTCAATGACAGTCATTTGATTT
GGAAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATTGGCAAG
ACGAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAAGTATGGATACAA
GTTTTGTCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAAGGAACTC
ATTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAACATTTTA
GAATGGCCTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAAGAAGA
CCGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGATTCATCAA
GCTTTCAGAAACCAAAGAAAGATATGAACATTGCTTCAGGTTGTCCAATG
TTTATGAATTTGAACAGATTGCAACCTGAAGGATTTTTAAAGGACGACTC
TTTATTTGTCGAAGTTAAAATAGATTAAGTTTTACGATATTTAGTACTTT
TTAAGTAATTGTTAANCTCAAACCTGAAGGATTTTTAAGGGATGACTCTT
TATTTGTCGAGGTCAAAATAGATTAATATTATGATAAACACAGCGGGGTG
TGAAAAGATATTTTACAAATAAAAAATAGTTATTCATGTATATTTTCGTA
AATATAACAGAAAATAAAACTTACTAAATTTGAATGAAAAATTTGTATGC
AATAAATATTATATAATGGAAATACGAAAAATTACGTAAAAATTATATTA
AGCATTTTTTAAGATCAATTTTATACACTTTAAAACACAAAAAAGAAATC
TAGGATTTTAGTATTTTT

Coding sequence (CDS) from alignment at scaffold_14:754710..755827-

>TCONS_00048047 ID=TCONS_00048047|Name=TCONS_00048047|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_14:754710..755827- (Clytia hemisphaerica)
AATGGCCTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAAGAAGAC
CGAAGTAAATGGAAAAGAAGAAATTTTGCGTTGAAAATACTGAAGAAGTT
TCGAATGAGTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCT
TAAACAAACTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATC
AACAGAACCATGGAGTTGAAACTTCAGAACAAATCGCCATGAATGAAAGA
ATGAAAAGTGTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGA
TTTAGATTTGAAATTTCAACTCCATGAAAACTCTGTCAATGACAGTCATT
TGATTTGGAAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATT
GGCAAGACGAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAAAATGGC
CTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAAGAAGACCGAAGT
AAATGGAAAAGAAGAAATTTTGCGTTGAAAATACTGAAGAAGTTTCGAAT
GAGTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCTTAAACA
AACTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATCAACAGA
ACCATGGAGTTGAAACTTCAGAACAAATCGCCATGAATGAAAGAATGAAA
AGTGTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGATTTAGA
TTTGAAATTTCAACTCCATGAAAACTCTGTCAATGACAGTCATTTGATTT
GGAAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATTGGCAAG
ACGAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030573XLOC_030573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048047-proteinTCONS_00048047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048047-exon-scaffold_14-1575043694:755390..755827TCONS_00048047-exon-scaffold_14-1575043694:755390..755827Clytia hemisphaericaexon
TCONS_00048047-exon-scaffold_14-1575043694:754710..755276TCONS_00048047-exon-scaffold_14-1575043694:754710..755276Clytia hemisphaericaexon
TCONS_00048047-exon-scaffold_14-1510915933:755390..755827TCONS_00048047-exon-scaffold_14-1510915933:755390..755827Clytia hemisphaericaexon
TCONS_00048047-exon-scaffold_14-1510915933:754710..755276TCONS_00048047-exon-scaffold_14-1510915933:754710..755276Clytia hemisphaericaexon
TCONS_00048047-exon-scaffold_14-1491911889:755390..755827TCONS_00048047-exon-scaffold_14-1491911889:755390..755827Clytia hemisphaericaexon
TCONS_00048047-exon-scaffold_14-1491911889:754710..755276TCONS_00048047-exon-scaffold_14-1491911889:754710..755276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:754710..755827 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62604	0.605843	0.921682	0.221754	0.576071	0.560414	0.940243	1.21078	2.33055	11.1678	5.07154	8.50315	12.0275	12.2524	17.9085	15.0624	6.35449	9.3175	15.4196	8.92784	4.88249	10.2026	1.83991	1.65527	1.84145	3.31156	23.3116	24.3269	40.4306	32.3945
Blast
[Close]
BLAST of TCONS_00048047 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.868e-24
Identity = 32/75 (42.67%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:  441 WPFQKKIKFTLINQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVKID 662
            WPF++K+   L++Q   S+ H+   F P+ +SSSF+KP  +MNIASGCP+F+    L+   ++KDD++F++V +D
Sbjct:  488 WPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561

HSP 2 Score: 60.8474 bits (146), Expect = 1.868e-24
Identity = 37/133 (27.82%), Postives = 75/133 (56.39%), Query Frame = 2 
Query:   74 VENTEEVSNEFESLQKLFQENENLKQTVANLVKRLFIIEN--------QQNHGVETSEQIAMNERMKSVEETTRINIESIGDLDLKFQLHENSVNDSHLIWKINNFQQRTTDAVIGKTRALHSAPCFTSKMAF 448
             E  +E+  E    ++ ++E +++K +V +L  R+  +E+         +N G+  S Q++ +++M SV +        + D+DL+FQ+ E +  +  LIWKI ++++R  +AV+GKT +L+S P +T    +
Sbjct:  327 AEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLES-QLSRHDQMLSVHDI------RLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGY 452
The following BLAST results are available for this feature:
BLAST of TCONS_00048047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.868e-2442.67TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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