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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048021 ID=TCONS_00048021|Name=TCONS_00048021|organism=Clytia hemisphaerica|type=transcript|length=1726bp
GGATCCTgccttaaaataaaaacatctaTTCATTCATTTACAAAATACAC
GTCATGAGTTTTCATGCACATATAATTAAATACTTTTTAATATGGTCTTT
TATTCCACATCAACTTCAAAGAACAAACagtcatcttttaaaaaccCATC
AATATCCAATCTATTTAGTTCAATAAACATTGGGCACCCTGAAGCTATGT
TCATTTCCTTCTTtggtttttgaaaactttctgaTCCTTTCTTAGGATTA
ATTTCTTCGATGTGGTCTTTGCTCCTGTTTTGTTGATTGATCAAagtgaa
tttgattttcttttggaaaggcCATTCCAAGATGTTGTCATAGTCTGATT
TCATAAGAACCAAGAATAGTGATAAGTGTGTTCCTTCTCCTACTCCATCT
CCGTTTAGATAGGCCCTTAAACAAAATTTGTATCCGTATTCACTTGTATA
GCATGGTGCACTATGTAAAGCACTGATATCTCCAACTAAGGTCTGTTGGC
GTCGCTGTCTAAAGTCGTCTATTTTCCATAGCAATTTCCCATTCATTCGA
CTATTTTCAAGGAGTTGAAGACGCAGATCAACGTCGTTGATGTTTCTATG
ATTCTCCTCTGCACATTTATGTAATTTCCTTAAATCTTGTCGTTGTGGTT
GAACCATTTGCCTTGAAGCTTCCAGCATTTGTTCGAAATCTTTCTTCATA
TTTGCCATttcgttttgaaagttttcaaattgGATCATACATCTTTGTTT
GAACATTTCATAATTTATATCGGCTGATTCCAATGCCATTTGTAGTTCGT
CAACCCTTGATTTcagttctttgttttcttgttgttCCTCGAGTAATTGT
TTGTGAAGGCATTCCATATTTACTGGTGTTGTTGTTGAGTCGATCATTTT
TCTTCGGTTCAATCGATTTATTTTTTCTGCCAATATTTCCGTCCTAGGTA
CACTAGTACCAATCAGTTTTTAGAATActcaaaaattgagctttttgata
ctttttatgATTCCTTTGTGATAGTATACCAGGTTTTTTGTCTTCTTTGG
TTGAACGAGTGGGTTTGTCTTTGATTTCTGTTGATAAAGAAAGACTAATT
ATCATATATAGACAAAGTCTACGGTGTCCGAACGCAAAACAGTACCCTTT
TCATTAGACAAGGTGCAAAAACTATCAGATTACCATGACACGCAATTGTA
ACATGATAATATTATTCTAAAGCAGGCTTAAGTATTGAGCAATATGCCTC
AATAAGAAAAACATTGAATATAACGTAACATAAACAACAAGATCAAATAC
AAAAATACGTCAACTCgcttatttcttagaaaaatcaaatttaaagacCA
GGACAAAACCTCGTCAATTTTACGtcacaaaaatctcaaatgtaCTTTTA
TGAGGCTGTAAGGCTTGGAAATCTGTCTTCTGGAACGTGTCAAGCCAAAC
CCGAAAATTAGTTTGAATCTCGCTGATTTACTTATGCAGTTGCctaattc
tctaattcgatctccaAGGTATGAAGACTATTCTCCGAATTAGAATAAAA
TTCGAATTCCAGAGAGCATTCTACACTACTTTCCAGCTGAAAAAGATCAA
TGCTTGAATTCGAATTAAATCGAATTTAAGAACGATCCGAATTATAGAGG
GTTGACTGTATTCACAACTGAAAAAACCTTACCTGATTTTTGTGGAAGAT
TCTCCCTCTTGTTAACTCCTCCAAAT Run BLAST on NCBI transcript from alignment at scaffold_14:763881..771228+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048021 ID=TCONS_00048021|Name=TCONS_00048021|organism=Clytia hemisphaerica|type=transcript|length=7348bp|location=Sequence derived from alignment at scaffold_14:763881..771228+ (Clytia hemisphaerica)
GGATCCTgccttaaaataaaaacatctaTTCATTCATTTACAAAATACAC
GTCATGAGTTTTCATGCACATGATTAATTACTTTTCAATACAATATGGTC
TTTTATTCCACATCAACTTCAAAGAGCAAACAGTCATCTTTCAAAAACCC
ATCAATATCCAATTTATTTAGCTCAATAAAAATTGGTCAACCTAAACATT
TCCTTCTttgctttttgaaaactttctgaGCCTTTCTTAGGATTAATTTC
TTCGATGTGGTCTTTGCTTCTGTCTTGTTGATTGATTGAAGTGATTGATT
AGAGTGCAGATATTATTTGGGTCAAAGATAACAaattattactttatttt
ttaaagtaaaaaaacttACNATTATTTGGGTCAAAGATAACAAATTATTA
CTTTAATTTTTAAGGTAGAAAATTTTAAAGTAAACAAGTAATTTTAGCTA
TTTCTACAAAACATAATGAATCACAGTATAATTATCATAATATATTAAAC
AATTTGAACTATAACATTACCTTAGTTTTTTATCTTAGGATCCTgcctta
aaataaaaacatcaattcatttatttacaaaatacaCGTCATGAGTTTTC
ATGCACATATAATTAAATACTTTTTAATATGGTCTTTTATTCCACATCAA
CTTCAAAGAACAAACATAGTCTGGCTGATTTATGAAATAAAAGAGGTcaa
ccttgaaaaaatttcgGCACTAGGTTTCTTGGTACCGTTagaagcgcaat
tttatgtagattaacatactcagagcctcacgaTGAGGCCCTTGGGCAAA
ACATTTTATGAAATCAAACCTGAGGGAtacttttttgcccaaaatgcctg
gaattggaattttcgtaacaAAGCTGACCTATACGTCATGAACTTTTAAG
GCCTAAAAAACTCCTTTGATTAAATCTTAATTAGTATTTATGAATTGCAT
TAAAATAAAGACTtcctaaaaatattaaaattcggGTTTTTCGGGAATAA
TGGGCcataaaaatcggaaaatcggggaaactgcTCCGAAAACCTCAATA
GATATTGAAAATATGACAAACTAACGCTTATTAATATCATGACAGGTTGA
CAAATCTAGCTCTAAACTTCTGAAACCTTGTGAAAGCCAAAATAATGGTA
AGGATCTAGTTCTTcaggaaaatcggatttttaaaatccaaaaatcggga
aataaATGTTACAAAACTTAACTTCTCTTTTAGAAATTCACATAAGTATT
TCAGAAAGTGCTAGACATAAAATGGTCACAACTTTTGAACTTCTTTTAAG
TAAAGTAACGTTAAAAAGTTATGAAATAGGTTTTCGGTGAAAACGGGCTC
ACATAATCGGGAAATTGGGCACAGAGAATCGGGAAATTGAGAAATAAAAG
ATAAATTATGCTTTAAAAATTCATGAGATTTCTCAATCTTTAAGTTTGTG
AACTTTGCTCTTTGAAAGCCAGGGAttaaaaatgctttgaaaatcGGAAT
AAACATTAGAAATGAAATAACTTGTTGAGtataaaaatcggggaaacttt
tCAAGAAGCCTAAAtgtagtaaaataaaaattatgtaaTACTAAGTTTTG
ATATCACAAAATCTATTAGAAAGTCTAAACTAGTGTTTCCAGAATGTCAA
AGATATTCCTCTCACTCGTCAAAGGCTCGTCAGTTTCATTATCTGAATCG
GGTGGTGGAGCTTCTGCGTTTTAACACCCTTCACCATGACACCCACCACA
TGCAGCATCACAATAAAGCCCATTGCGACATAAGTTTGAGCTGCATGGTC
GCCGGGAACTTGTTTTGCAATTGCATCGTACTACTTTAAGAAGCCACTTT
GATGCATAGGATAGTCCTCTTTCCACAATCAACACATCTGCATCACCGTC
AATTTGGTCTGTCAGGAATCCTTGCTTCTTGAACACAGACGAAAGCATTT
TGATCAACTGAACTTTGTTGGATGGGCTAGATAAGAACAATTCTCTGTTG
GTAGTCACTTTACGATCTAGTGAGATGGCAACAGAAGCTGATGTTTTCCC
CGATCGTCGATCGTGTTCTTGTCCTTTTGTTGACATTTCATCCTCGTATC
TATCGAAAACAATGACGACAGTAGAGTAACAATTGAAATTGTTCTTGAGG
AAGTTGAAATACTCGTCGATCACCGCTGAATGTGTTGTTTTCGGCCACGA
GTTTTTGTGTAGCAATGAACCGCCATCAACGATGCATACATCGTGAGATT
TTAATTGGCATGCGTTTCTTTTGTTGATGAAACAATAAACTCACCGGTTT
CGTGAGCTGAGAACCAGTTGCTCTGTCTCCGAGATACCACGTTGGCATCG
TTGGATTCATCAGGCGGTAACCTCCACAGCGTCTTCTGTTTCGCCCCCTT
GCTGCGACAGACTATGGAGGTGGAGGGCACCTCCCATGAGGTATCCAACG
TGGTGACTGACTTCTTCAGTTTGCAACGTTTCTCTTGGTCCAAATAAACC
GACTTGCATTCTCAACAGTTTCCTCGATCTGCTCAaccattttttttcct
tcagtACGATTAAAACCAAGATGCTTTAGTTCTGAGACCAACAAAACCTC
TGAATCCGACTTCAACGGGTAGACAAGTGACAGTCCAACCGTGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGA
CCCAGCCAGTTCCTTATCTTCAGGGACATTTTCTGTTGAATAATATTCAC
CCTTGAAACAGCAACTTCGTAGAAATTTTAACCAACATCCTCAGTGAAGT
TGCCAAGAGCAGTTAGTCGACTAAACAATATTGTTGGACTTGGAATCCCT
CTTCCAACGTCTTCGGGGCTTCGGCGACGTCACAGTTAATCTCTGGCCCA
GCGATCAGCCCACTCGAGAGACTCTTCAATTCAGGCTCTGTTTTTTCGAA
CGGTTCGTGGTTGCCAAACCAATTCTTCACGGTAGCGAAATCTTTATCGC
CACACTTCATTCTGCTCAACGAAAGATTGACATGTTGCTCGCTTGTTTTA
CGGCATGCACCGGTAAGGGCTGACATAGCGTTGTGGATGTCGGCAGATCT
GTGGATGCCTCCGATCCGAAGTTGACTCGGCGATTCCACTCCCACGATTG
AGCCCTCCGTTGCTTTTGATGGGTCGCATTATTATCTGCTCGATGATCAA
ATCCGACCATAAACCAGCCCAAAATTTATCGCTTCGTTTCACAGTGTGGT
AATCATTTGAAAACTGCTTGTAAACCCAAGTGTGAGTTGTCTTGAGCTCG
AGCATATTTTAGAGGTGTAGCCGTGTGATCTTAGCGTAATGGATGTGACC
GGTTGCTGTAAACAGGTTGATCATCCGAGAAAGGGTGAAAAGGTAAAGGT
TCCAATCTCCTGTCCTTTCTGATCTAATGAAATCCTTTACAACTTTCATG
TAATCCAGATATTGCAACCATAATTTCGCAGTACGTGAGCATGTTTTCAG
ATCATCTTTGTAATTTTCCATAAGTTTCGACAGTGTTGGATATCTGCTCA
TGTCCAAATCAATGGTGGGATCAACAGCATTGGCAATCATGTTCAGATCA
GTTGTCAGATCTTCGATTTCTACAGCCTCATCATCAGAACCAACAAGTGT
TGACATCAATTTTCAAACAAGAGCTGATTCAACTAGAAAATGTGCCCTCA
GGGCTCTGGCAATGGCTTTACTACTTATGATGTGTAAAGGATGGGGTATA
TTATTGAAAAGAGGAAATaaagcaatgcaatgtctttgtcaaaaatcaaa
accaatccGATAATTGTTCAGCCTGGCAAGGTCTGGTCGATcttcatatt
ttcaaagaaaatcgaggttttttcaaacaatttccccAATTTCCCGATTT
CTGGACCccgtttttccaaaaaaaaaggcgatttttaatatttttaagaa
gTCCTTATTTTAATGCAATTCATAAATTCTAATTAAGATTTAATCAAAGG
AGTTTTTTAGGCCTTAAAAGTTCATGACGTATGGGTCAACTTTGTTACGA
AAATTCAAATTCCGGTCATTTTGGGCTAAAAAGTACCCCTCAGGTTTGAT
TTCAtaagattttttgcacaaggGCCTCAtcgtgaggctctgagtatgtt
aatctacataaaattgcgcttctAACGGTACCAAGAAACCTAGTGCGGAA
ATTTTTCAAGGTCAAATCCTATTTCAGCCAGACTAacagtcatcttttaa
aaaccCATCAATATCCAATCTATTTAGTTCAATAAACATTGGGCACCCTG
AAGCTATGTTCATTTCCCTCTTTGGTTTGTGAAAACTTTCTGATCCTTTC
TTAGGATTAATTTCTATGATGTGGTCTTTGCTTCTGTCTTGTTGATTGAT
TGAAGTGATTGATTAGAGTGCAGATATTATTTGGGTCAAAGATAACAAAT
TATTACTTTAATTTTTAAGGTAGAAAATTTTAAAGTAAACAAGTAATTTT
AGCTATTTCTACAAAACATAATGAATCACAGTATAATTATCATAATATAT
TAAACAATTNcaaaaaaatttgcggaatttcggaattggtaaaagatatt
caaaatttgcggaattttcgacaaaaatactgaatttcaaaggaattttc
ggtgacgaaattttggttcaatttataTTACTTTATTCTTTAAGGTAAAA
AATCTTACAGTAAACAAGTAATTTTAGCTATTTCTACAAAACATAATGAA
TCACAGTATAATTATCataatatattaaaaaatttgaactATAACATTAC
CTTAGTTTTCTATCTTAGGATCCTGCCTTAGAATAAAAACatcttttcat
ttatttacaaaatacaCGTCATGAGTTTTCATGCACATATAATTAATTAC
TTTTTCAATACTATATGGTCTTTATTCCACATCAACTTCAAAGAACAAac
agtcatcttttaaaaaccCATCAATATCCAATCTATTTAGTTCAATAAAC
ATTGGGCACCCTGAAGCTATGTTCATTTCCTTCTTtggtttttgaaaact
ttctgaTCCTTTCTTAGGATTAATTTCTTCGATGTGGTCTTTGCTCCTGT
TTTGTTGATTGATCAAagtgaatttgattttcttttggaaaggcCATTCC
AAGATGTTGTCATAGTCTGATTTCATAAGAACCAAGAATAGTGATAAGTG
TGTTCCTTCTCCTACTCCATCTCCGTTTAGATAGGCCCTTAAACAAAATT
TGTATCCGTATTCACTTGTATAGCATGGTGCACTATGTAAAGCACTGATA
TCTCCAACTAAGGTCTGTTGGCGTCGCTGTCTAAAGTCGTCTATTTTCCA
TAGCAATTTCCCATTCATTCGACTATTTTCAAGGAGTTGAAGACGCAGAT
CAACGTCGTTGATGTTTCTATGATTCTCCTCTGCACATTTATGTAATTTC
CTTAAATCTTGTCGTTGTGGTTGAACCATTTGCCTTGAAGCTTCCAGCAT
TTGTTCGAAATCTTTCTTCATATTTGCCATttcgttttgaaagttttcaa
attgGATCATACATCTTTGTTTGAACATTTCATAATTTATATCGGCTGAT
TCCAATGCCATTTGTAGTTCGTCAACCCTTGATTTcagttctttgttttc
ttgttgttCCTCGAGTAATTGTTTGTGAAGGCATTCCATATTTACTGGTG
TTGTTGTTGAGTCGATCATTTTTCTTCGGTTCAATCGATTTATTTTTTCT
GCCAATATTTCCGTCCTAGGTACACTAGTACCAATCAGTTTTTAGAATAc
tcaaaaattgagctttttgatactttttatgATTCCTTTGTGATAGTATA
CCAGGTTTTTTGTCTTCTTTGGTTGAACGAGTGGGTTTGTCTTTGATTTC
TGTTGATAAAGAAAGACTAATTATCATATATAGACAAAGTCTACGGTGTC
CGAACGCAAAACAGTACCCTTTTCATTAGACAAGGTGCAAAAACTATCAG
ATTACCATGACACGCAATTGTAACATGATAATATTATTCTAAAGCAGGCT
TAAGTATTGAGCAATATGCCTCAATAAGAAAAACATTGAATATAACGTAA
CATAAACAACAAGATCAAATACAAAAATACGTCAACTCgcttatttctta
gaaaaatcaaatttaaagacCAGGACAAAACCTCGTCAATTTTACGtcac
aaaaatctcaaatgtaCTTTTATGAGGCTGTAAGGCTTGGAAATCTGTCT
TCTGGAACGTGTCAAGCCAAACCCGAAAATTAGTTTGAATCTCGCTGATT
TACTTATGCAGTTGCctaattctctaattcgatctccaAGGTATGAAGAC
TATTCTCCGAATTAGAATAAAATTCGAATTCCAGAGAGCATTCTACACTA
CTTTCCAGCTGAAAAAGATCAATGCTTGAATTCGAATTAAATCGAATTTA
AGAACGATCCGAATTATAGAGGGTTGACTGTATTCACAACTGAAAAAACC
TTACCTGATTTTTGTGGAAGATTCTCCCTCTTGTTAACTCCTCCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048021-exon-scaffold_14-1491911889:763881..763949 | TCONS_00048021-exon-scaffold_14-1491911889:763881..763949 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1510915933:763881..763949 | TCONS_00048021-exon-scaffold_14-1510915933:763881..763949 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1575043694:763881..763949 | TCONS_00048021-exon-scaffold_14-1575043694:763881..763949 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1491911889:764487..764545 | TCONS_00048021-exon-scaffold_14-1491911889:764487..764545 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1510915933:764487..764545 | TCONS_00048021-exon-scaffold_14-1510915933:764487..764545 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1575043694:764487..764545 | TCONS_00048021-exon-scaffold_14-1575043694:764487..764545 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1491911889:769631..771228 | TCONS_00048021-exon-scaffold_14-1491911889:769631..771228 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1510915933:769631..771228 | TCONS_00048021-exon-scaffold_14-1510915933:769631..771228 | Clytia hemisphaerica | exon |
| TCONS_00048021-exon-scaffold_14-1575043694:769631..771228 | TCONS_00048021-exon-scaffold_14-1575043694:769631..771228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:763881..771228 + |
Blast
BLAST of TCONS_00048021 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.110e-47 Identity = 75/163 (46.01%), Postives = 113/163 (69.33%), Query Frame = -2
Query: 103 INDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCYTSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKFTLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDIDGFLKDDCLFFEVDVE 591
+ D+DLR Q+LE + NG L+WKI D+++R+Q+ ++G +L+S P YT +GYK C R YLNGDG+G+GTHLSLF V+M+ +YD +L WPF++K+ L++Q + + + P S SF+KP EMNIASGCP+F+ L+ ++KDD +F +V V+
Sbjct: 399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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