TCONS_00048048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048048
Unique NameTCONS_00048048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048048 ID=TCONS_00048048|Name=TCONS_00048048|organism=Clytia hemisphaerica|type=transcript|length=1924bp
ATTCATTTGCACATTGCATTTGGAGGAGTTAACAAGAGGGAGAATCTTCC
ACAAAAATCAGAAATCAAAGACAAACCCACTCGTTCAACCAAAGAAGACA
AAAAACCTGGTATACTATCACAAAGGAATcataaaaagtatcaaaaagct
caatttttgagTATTCTAAAAACTGATTGGTACTAGTGTACCTAGGACGG
AAATATTGGCAGAAAAAATAAATCGATTGAACCGAAGAAAAATGATCGAC
TCAACAACAACACCAGTAAATATGGAATGCCTTCACAAACAATTACTCGA
GGaacaacaagaaaacaaagaactgAAATCAAGGGTTGACGAACTACAAA
TGGCATTGGAATCAGCCGATATAAATTATGAAATGTTCAAACAAAGATGT
ATGATCcaatttgaaaactttcaaaacgaaATGGCAAATATGAAGAAAGA
TTTCGAACAAATGCTGGAAGCTTCAAGGCAAATGGTTCAACCACAACGAC
AAGATTTAAGGAAATTACATAAATGTGCAGAGGAGAATCATAGAAACATC
AACGACGTTGATCTGCGTCTTCAACTCCTTGAAAATAGTCGAATGAATGG
GAAATTGCTATGGAAAATAGACGACTTTAGACAGCGACGCCAACAGACCT
TAGTTGGAGATATCAGTGCTTTACATAGTGCACCATGCTATACAAGTGAA
TACGGATACAAATTTTGTTTAAGGGCCTATCTAAACGGAGATGGAGTAGG
AGAAGGAACACACTTATCACTATTCTTGGTTCTTATGAAATCAGACTATG
ACAACATCTTGGAATGgcctttccaaaagaaaatcaaattcactTTGATC
AATCAACAAAACAGGAGCAAAGACCACATCGAAGAAATTAATCCTAAGAA
AGGAtcagaaagttttcaaaaaccaAAGAAGGAAATGAACATAGCTTCAG
GGTGCCCAATGTTTATTGAACTAAATAGATTGGATATTGATGggttttta
aaagatgactgtTTGTTCTTTGAAGTTGATGTGGAATAAAGACCATATAG
TATTGAAAAAGTAATTAATTATATGTGCATGAAAACTCATGACGtgtatt
ttgtaaataaatgaaaagatGTTTTTATTCTAAGGCAGGATCCTAAGATA
GAAAACTAAGGTAATGTTATagttcaaattttttaatatattatGATAAT
TATACTGTGATTCATTATGTTTTGTAGAAATAGCTAAAATTACTTGTTTA
CTGTAAGATTTTTTACCTTAAAGAATAAAGTAAtataaattgaaccaaaa
tttcgtcaccgaaaattcctttgaaattcagtatttttgtcgaaaattcc
gcaaattttgaatatcttttaccaattccgaaattccgcaaatttttttg
NAATTGTTTAATATATTATGATAATTATACTGTGATTCATTATGTTTTGT
AGAAATAGCTAAAATTACTTGTTTACTTTAAAATTTTCTACCTTAAAAAT
TAAAGTAATAATTTGTTATCTTTGACCCAAATAATATCTGCACTCTAATC
AATCACTTCAATCAATCAACAAGACAGAAGCAAAGACCACATCATAGAAA
TTAATCCTAAGAAAGGATCAGAAAGTTTTCACAAACCAAAGAGGGAAATG
AACATAGCTTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTGGATAT
TGATGggtttttaaaagatgactgtTAGTCTGGCTGAAATAGGATTTGAC
CTTGAAAAATTTCCGCACTAGGTTTCTTGGTACCGTTagaagcgcaattt
tatgtagattaacatactcagagcctcacgaTGAGGCccttgtgcaaaaa
atcttaTGAAATCAAACCTGAGGGGTACTTTTTAGCCCAAAATGACCGGA
ATTTGAATTTTCGTAACAAAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00048048-protein

>TCONS_00048048-protein ID=TCONS_00048048-protein|Name=TCONS_00048048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MIDSTTTPVNMECLHKQLLEEQQENKELKSRVDELQMALESADINYEMFK
QRCMIQFENFQNEMANMKKDFEQMLEASRQMVQPQRQDLRKLHKCAEENH
RNINDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCY
TSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKF
TLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDID
GFLKDDCLFFEVDVE
Run BLAST on NCBI

transcript from alignment at scaffold_14:768717..771245-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048048 ID=TCONS_00048048|Name=TCONS_00048048|organism=Clytia hemisphaerica|type=transcript|length=2529bp|location=Sequence derived from alignment at scaffold_14:768717..771245- (Clytia hemisphaerica)
ATTCATTTGCACATTGCATTTGGAGGAGTTAACAAGAGGGAGAATCTTCC
ACAAAAATCAGGTAAGGTTTTTTCAGTTGTGAATACAGTCAACCCTCTAT
AATTCGGATCGTTCTTAAATTCGATTTAATTCGAATTCAAGCATTGATCT
TTTTCAGCTGGAAAGTAGTGTAGAATGCTCTCTGGAATTCGAATTTTATT
CTAATTCGGAGAATAGTCTTCATACCTTGGAGATCGAATTAGAGAATTAG
GCAACTGCATAAGTAAATCAGCGAGATTCAAACTAATTTTCGGGTTTGGC
TTGACACGTTCCAGAAGACAGATTTCCAAGCCTTACAGCCTCATAAAAGT
ACATTTGAGATTTTTGTGACGTAAAATTGACGAGGTTTTGTCCTGGTCTT
TAAATTTGATTTTTCTAAGAAATAAGCGAGTTGACGTATTTTTGTATTTG
ATCTTGTTGTTTATGTTACGTTATATTCAATGTTTTTCTTATTGAGGCAT
ATTGCTCAATACTTAAGCCTGCTTTAGAATAATATTATCATGTTACAATT
GCGTGTCATGGTAATCTGATAGTTTTTGCACCTTGTCTAATGAAAAGGGT
ACTGTTTTGCGTTCGGACACCGTAGACTTTGTCTATATATGATAATTAGT
CTTTCTTTATCAACAGAAATCAAAGACAAACCCACTCGTTCAACCAAAGA
AGACAAAAAACCTGGTATACTATCACAAAGGAATCATAAAAAGTATCAAA
AAGCTCAATTTTTGAGTATTCTAAAAACTGATTGGTACTAGTGTACCTAG
GACGGAAATATTGGCAGAAAAAATAAATCGATTGAACCGAAGAAAAATGA
TCGACTCAACAACAACACCAGTAAATATGGAATGCCTTCACAAACAATTA
CTCGAGGAACAACAAGAAAACAAAGAACTGAAATCAAGGGTTGACGAACT
ACAAATGGCATTGGAATCAGCCGATATAAATTATGAAATGTTCAAACAAA
GATGTATGATCCAATTTGAAAACTTTCAAAACGAAATGGCAAATATGAAG
AAAGATTTCGAACAAATGCTGGAAGCTTCAAGGCAAATGGTTCAACCACA
ACGACAAGATTTAAGGAAATTACATAAATGTGCAGAGGAGAATCATAGAA
ACATCAACGACGTTGATCTGCGTCTTCAACTCCTTGAAAATAGTCGAATG
AATGGGAAATTGCTATGGAAAATAGACGACTTTAGACAGCGACGCCAACA
GACCTTAGTTGGAGATATCAGTGCTTTACATAGTGCACCATGCTATACAA
GTGAATACGGATACAAATTTTGTTTAAGGGCCTATCTAAACGGAGATGGA
GTAGGAGAAGGAACACACTTATCACTATTCTTGGTTCTTATGAAATCAGA
CTATGACAACATCTTGGAATGGCCTTTCCAAAAGAAAATCAAATTCACTT
TGATCAATCAACAAAACAGGAGCAAAGACCACATCGAAGAAATTAATCCT
AAGAAAGGATCAGAAAGTTTTCAAAAACCAAAGAAGGAAATGAACATAGC
TTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTGGATATTGATGGGT
TTTTAAAAGATGACTGTTTGTTCTTTGAAGTTGATGTGGAATAAAGACCA
TATAGTATTGAAAAAGTAATTAATTATATGTGCATGAAAACTCATGACGT
GTATTTTGTAAATAAATGAAAAGATGTTTTTATTCTAAGGCAGGATCCTA
AGATAGAAAACTAAGGTAATGTTATAGTTCAAATTTTTTAATATATTATG
ATAATTATACTGTGATTCATTATGTTTTGTAGAAATAGCTAAAATTACTT
GTTTACTGTAAGATTTTTTACCTTAAAGAATAAAGTAATATAAATTGAAC
CAAAATTTCGTCACCGAAAATTCCTTTGAAATTCAGTATTTTTGTCGAAA
ATTCCGCAAATTTTGAATATCTTTTACCAATTCCGAAATTCCGCAAATTT
TTTTGNAATTGTTTAATATATTATGATAATTATACTGTGATTCATTATGT
TTTGTAGAAATAGCTAAAATTACTTGTTTACTTTAAAATTTTCTACCTTA
AAAATTAAAGTAATAATTTGTTATCTTTGACCCAAATAATATCTGCACTC
TAATCAATCACTTCAATCAATCAACAAGACAGAAGCAAAGACCACATCAT
AGAAATTAATCCTAAGAAAGGATCAGAAAGTTTTCACAAACCAAAGAGGG
AAATGAACATAGCTTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTG
GATATTGATGGGTTTTTAAAAGATGACTGTTAGTCTGGCTGAAATAGGAT
TTGACCTTGAAAAATTTCCGCACTAGGTTTCTTGGTACCGTTAGAAGCGC
AATTTTATGTAGATTAACATACTCAGAGCCTCACGATGAGGCCCTTGTGC
AAAAAATCTTATGAAATCAAACCTGAGGGGTACTTTTTAGCCCAAAATGA
CCGGAATTTGAATTTTCGTAACAAAGTTG

Coding sequence (CDS) from alignment at scaffold_14:768717..771245-

>TCONS_00048048 ID=TCONS_00048048|Name=TCONS_00048048|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_14:768717..771245- (Clytia hemisphaerica)
ATGATCGACTCAACAACAACACCAGTAAATATGGAATGCCTTCACAAACA
ATTACTCGAGGAACAACAAGAAAACAAAGAACTGAAATCAAGGGTTGACG
AACTACAAATGGCATTGGAATCAGCCGATATAAATTATGAAATGTTCAAA
CAAAGATGTATGATCCAATTTGAAAACTTTCAAAACGAAATGGCAAATAT
GAAGAAAGATTTCGAACAAATGCTGGAAGCTTCAAGGCAAATGGTTCAAC
CACAACGACAAGATTTAAGGAAATTACATAAATGTGCAGAGGAGAATCAT
AGAAACATCAACGACGTTGATCTGCGTCTTCAACTCCTTGAAAATAGTCG
AATGAATGGGAAATTGCTATGGAAAATAGACGACTTTAGACAGCGACGCC
AACAGACCTTAGTTGGAGATATCAGTGCTTTACATAGTGCACCATGCTAT
ACAAGTGAATACGGATACAAATTTTGTTTAAGGGCCTATCTAAACGGAGA
TGGAGTAGGAGAAGGAACACACTTATCACTATTCTTGGTTCTTATGAAAT
CAGACTATGACAACATCTTGGAATGGCCTTTCCAAAAGAAAATCAAATTC
ACTTTGATCAATCAACAAAACAGGAGCAAAGACCACATCGAAGAAATTAA
TCCTAAGAAAGGATCAGAAAGTTTTCAAAAACCAAAGAAGGAAATGAACA
TAGCTTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTGGATATTGAT
GGGTTTTTAAAAGATGACTGTTTGTTCTTTGAAGTTGATGTGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030574XLOC_030574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048048-proteinTCONS_00048048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048048-exon-scaffold_14-1575043694:771185..771245TCONS_00048048-exon-scaffold_14-1575043694:771185..771245Clytia hemisphaericaexon
TCONS_00048048-exon-scaffold_14-1575043694:768717..770579TCONS_00048048-exon-scaffold_14-1575043694:768717..770579Clytia hemisphaericaexon
TCONS_00048048-exon-scaffold_14-1510915933:771185..771245TCONS_00048048-exon-scaffold_14-1510915933:771185..771245Clytia hemisphaericaexon
TCONS_00048048-exon-scaffold_14-1510915933:768717..770579TCONS_00048048-exon-scaffold_14-1510915933:768717..770579Clytia hemisphaericaexon
TCONS_00048048-exon-scaffold_14-1491911889:771185..771245TCONS_00048048-exon-scaffold_14-1491911889:771185..771245Clytia hemisphaericaexon
TCONS_00048048-exon-scaffold_14-1491911889:768717..770579TCONS_00048048-exon-scaffold_14-1491911889:768717..770579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:768717..771245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43909	0.708682	0.435105	0.234208	0.316764	0.237811	0.306943	0.321772	0.414349	0.700091	0.763088	5.76437	28.6431	26.9106	28.1518	15.7722	2.72846	8.94456	4.88486	10.7024	1.45255	1.70334	1.12125	0.935872	0.412449	0.295505	68.7261	79.4429	26.4034	19.6622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00048048 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 2.107e-47
Identity = 75/163 (46.01%), Postives = 113/163 (69.33%), Query Frame = 2 
Query:  548 INDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCYTSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKFTLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDIDGFLKDDCLFFEVDVE 1036
            + D+DLR Q+LE +  NG L+WKI D+++R+Q+ ++G   +L+S P YT  +GYK C R YLNGDG+G+GTHLSLF V+M+ +YD +L WPF++K+   L++Q +  +   +   P   S SF+KP  EMNIASGCP+F+    L+   ++KDD +F +V V+
Sbjct:  399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00048048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF32.107e-4746.01TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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