TCONS_00048050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048050
Unique NameTCONS_00048050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048050 ID=TCONS_00048050|Name=TCONS_00048050|organism=Clytia hemisphaerica|type=transcript|length=1275bp
CCAATTTCTAACATGTATATACAGATTCAATCTCGAAAATGCAACTTTGC
TGCTGGCGTGCCACTACCATTACGCTACTACGGCTACCATTTTTTTAGCT
TCTAGAACGCTAAGCGGAGAGAGGCTAAAATAGGATACTTGGTCAGTCGC
ACGCAAATACAATTGATGAAAGTGAATTATAGACGTGTCTAAGTGAGAGT
GACCAAGTTACACCATATTCCCGCGTGACTGCACGGAGTTCCTTCCTTTT
GTAATTGAGCAGCTCTTGTCTTGTCGTCAATGTTCTCTTCGATTTAATTG
TCAACTTTTAATTGTCTTTTGTCattattgttatattattgAATACAACA
TGCCATCATCAACGGAATTTCCATCTGCCTGtgGCAAAAAGTCCAGTACT
CCAAATGCAGGAAAACAACGCTTTAAGCGCCAACTTAATTCATCAGCAAC
ATCAACGTCCTCAGCATCTGCTTGCTTGGAGGCTAAAAAGTCCAGGTCTG
CAACGTCTGCGTCTGCTTGCTTGGAGGCTAAGAAATCCAGATCACGTGAA
GATCCAATGCATATGTTAAGCAATTCATTTAATGGATTTAGTGGTGACGA
AGACTCGGACATTGGAAACCAATCATTGGACAAGACCCCACGTATCCATG
AAAACACTCAACTACGCAACCGAGGACTAAACACCCCAAGCAACAATTGC
ATTGTTTCATCAGATGTTGTCACACCTACGGGCAGCAATGTCAATGAAGG
TGAACTTTACAGgaaaatcacgAACATGGGAGACACAATATCCCAATCTA
TCAGGAATGTTGGTGAACTAGTTAAAAGCCAAGGGGAAAAGAATGAAGCC
CTCGAAACAAAACTTCAATCCATCGAAAACAAATTGAGCCAGCACCTGGA
AACAATTAAAAAGTCAACAAAAGTAACTGTTCCAAAATTTTTGCAGAAAA
GGATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAGAAAAATGGGATTTA
CTTGAACAATGGAATTCAGAGGTTAATGGGAACATAACGGACCAAATCCT
TGCGGACATTCATGCCCAGTTGAAGGGAAAACAACCTGAAGATGTGATTT
TAGCGGGTTTGAAGACACATTTTACATCAATTAAACGCGAACACGATGCG
GAGCTGAATGATCCAGGGAAATACAGAGAAGACAAGCTTAAGAAGAAATA
TCGCGCCAGAAAACAACGGCTTTATAATGCACGTACAAAATATATCAAGG
ATGGTTGGGAGGAGGAATTGTGGGC
Run BLAST on NCBI

transcript from alignment at scaffold_14:798513..805397-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048050 ID=TCONS_00048050|Name=TCONS_00048050|organism=Clytia hemisphaerica|type=transcript|length=6885bp|location=Sequence derived from alignment at scaffold_14:798513..805397- (Clytia hemisphaerica)
CCAATTTCTAACATGTATATACAGATTCAATCTCGAAAATGCAACTTTGC TGCTGGCGTGCCACTACCATTACGCTACTACGGCTACCATTTTTTTAGCT TCTAGAACGCTAAGCGGAGAGAGGCTAAAATAGGATACTTGGTCAGTCGC ACGCAAATACAATTGATGAAAGTGAATTATAGACGTGTCTAAGTGAGAGT GACCAAGTTACACCATATTCCCGCGTGACTGCACGGAGTTCCTTCCTTTT GTAATTGAGCAGCTCTTGTCTTGTCGTCAATGTTCTCTTCGATTTAATTG TCAACTTTTAATTGTCTTTTGTCATTATTGTTATATTATTGAATACAACA TGCCATCATCAACGGAATTTCCATCTGCCTGGTAAGCATTATATTATATT TTGATTTCGAAAGTGATTTCTACGAACTGACTGATTGCTGTAGAGTATAG ACATTAAACAGTTAAAGCCTGGCTAACATTAAAGTAGAATAAAATAGCGA ATGAAACACAACATAAACATTGCCTGGGTCTACACTCATTTGTGTATGTG CTCCCTATTCTAGGCTGCCTTGAGACCTGGCATGTAACCTTGTGTTTCCT GAGCATAGATAGACCAAATCAGTTATGTTGTCTATTGTTTTGATATGATG ATGGCAATTAGAATATCTGGGTCTACACTTCTTTGTGTATGTGCTGCTTT TTTCAAGTGAGCCTTAAGACCTGATATCTATTTTGACATTACATATGGTG ACAAAAGAAGTTTACTTCCCTAAACAGCTAAATCTTGGTAATCTCTCAGA ACTTCTCGTCCAGTTCACAATTCTTATTCAATAGATAGAAATTTGATTAA AGACATATTTTTTGCATGTAGGGTAAATAGTCCACCTATGAGAGAGGAAG AATAAAATTATTAGGTGGTCCATAGCGTAAGGTCTCTTGGGTCACGATGC TTTCTATAGACTTTATTTATTTTTAGTGGCAAAAAGTCCAGTACTCCAAA TGCAGGAAAACAACGCTTTAAGCGCCAACTTAATTCATCAGCAACATCAA CGTCCTCAGCATCTGCTTGCTTGGAGGCTAAAAAGTCCAGGTCTGCAACG TCTGCGTCTGCTTGCTTGGAGGCTAAGAAATCCAGGTAAGAAAATTCCTT TATTAATATGTGATAAACTTTTGTGGGGATATTATCTTGTGGGCTTAAAA TTTAGTTCCCCATTTGAAGAAGCCTTACCATGGCAAAATAGTTTTTAATA AAATGCCCAAATTATGTGAAATAACAAAGCCCTTCACAAAATTAAGTCCC TGAAAAATCTTGTGGATGAACTTTCAGCTTTTCAGTTCTAAAGAAGGAAA GGGATTTGAAAGCTAACCCATGAAATTGCTCTACTGCGCGTACTCTTAAT AATCGGATTTTAGTCTATTTTTCCTCTATTTTCAGTTTTTTAACCCTTAG CAATTAGGTTTTCCAATGTTTATTGGAATTTGAAATCTTTTTAATCCTGC ATTTATTTATACCAGGAACCTGAAGTAGAATTAGTATATGTAATCACATG ATAACGAGTGCAATTCGAGAATAATTGCATGAGTGATTTTTTTGTAATTA ATTTTCCGAGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATCACGA GTGCAATTTTCGAATTGTACGAGTTATCATGTGATTACGAGCTAATCGCA CAATCGGTTTCACTGCTTTTTCCCTGTCAAGAAAATAAATTACACTGAAA GTTTTATATTTTTGATATTTTTCTCTTCTCTTTATGTTTTTCTCTTTATT GTTGTTTATAGATTTTCTTTCTCACAAAATTAATTTCGAATGCAATTAGA ACGTTCGATAAAAAAATGTAAGAAAAAACATTAAAATCAATTTTGTAAAC ATTGGTCCGTCACTGAAGAGTGTGATTAACGATTAATTGCTCTCTACAGG ATGCAATTAACGATTAATTGCTCTCTTTGAAGGGGCGCCAAATGAGAAAA AATAACTAATCGTGCGATTACTGTTAAAAACTGTTACTTATGTCTTTTAG ANAAATAACTAATCGTGCGATTAGGTGTCTTATTTTATGAATAATAAATT TTTTCTAGATCACGTGAAGATCCAATGCATATGTTAAGCAATTCATTTAA TGGATTTAGTGGTGACGAAGACTCGGACATTGGAAACCAATCATTGGACA AGACCCCACGGTAATTTATTATGTTTTCATTTCCCCTTATTAAACAGTAG CATCAAAGCAGTTATGGTGTAAAATTGCTTGTATAATTCAGTTGGACTGT CAATTCTCCTTCATCAGTTCAGTGATGCAAGTTTTAAACCTTTATGACTG TTTACTGCGGTATGAGCCAGTGAAATTTCAAGCAGCAAAACAAAGTTCCC ATTGCAATATTATGTTGAGTATTATGAGTATTTTTAAAATTCCATATTTG TTTAGTATGTTATAAGATATTATTTTAAATTTGCAGTATCCATGAAAACA CTCAACTACGCAACCGAGGACTAAACACCCCAAGCAACAATTGCATTGTT TCATCAGATGTTGTCACACCTACGGGCAGCAATGTCAATGAAGGTGAACT TTACAGGTAGGTTTTAATTTTATCTAATATTTAATTGAAATCTTCTTTTG AACTATTCAGATTTTTTGACCTAGAATTAAAAGGTTTGCTTCTAAAACAA ACAAAAATGAAAAAAATGGTTTTTAATTTTCACCGATGTCCCTTTAAATG TAAGTTGACATGAAGAACAAATAACATTTAGATTACCTGGGCAGTGGTTG GTCTGATATATTTTTATTGGAAAAAAAGAATGTCCATTTTTTCTAAACTC AGGAAGAAGAAAACATTTAAAAATGCAATAAAGAATTTGAAGAAAAAACA AAGAAAACAGTTATGGAAGGCCCACCAAACCTATGATGAAAATCTAACTA AAGAACAGGAAAAAGTTCAATGCCTGGAAGATGTTGTAGAATCAACAAAG AAAAATTATAATGAAAAGTTAAATGAAGAAAAGGAGAAGGTTCAATGTCT GGAGGATGTTGTAGAATCGACAAAGAAAAATTTTCAACTTCTTGCAAAGC ACAGTTTAAGATATAACAATATAACATCTACTAAAGAATATAAAACATGC ATTGCCACTGGTTTATGCCAAACAACAAAACCTAAAGTAGCCAAACATAA TAGAAGCAAAAAGACTTCAGATTTACTATCAGAGATACCCATCTTTCACG AAGAAGATGTTATTGAAATTGAAAATGGTACAATAGGCAATGGTCAATTT GGAAATGTGAAAGCTTTTAGATTAAAAAGGCTNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNAAAAAATACAATACGTATCATCGTCACATTG CATATGAACTGAGAAACATACCAGGATCAAAACAAAGCGTTCAAACCGAT ATATTTTCTCTTGGACACATGCTTAAACATCTGCTCTTGTGCCTTGTGAC CAAGTTGTAGAACTAGGAAGAAGTATGAAAGTAAATGAGGCAGATTTTCG AATCCCCATTAAAAAAGCATTGACTGTGTTGATGAAAATGAAATGATATT GCACATTTTTATTACTTTGGTATTTTACCTTCAATAGTATGATGAAATTT TTCCTAAGCTATTTCTCTAAGGCTTAGCTGTTACAAAAACAGTGTGATCA ATTTCTAATTTCATGGATTTGAGTCTCTAATTACACGGTTTAGGAAAAGT TTACAATTTTATATATTTTTGGATATCAAAAGATCTTTGTCATTTTGTTG TTTTTCATGTGTGTTTTTGTTATGGCAGTCTATTTAAATTGTTTTAATGA CTTATTTTTTAGTGACATTTGAAAAATGTCATTAACATTTAAAAGAAGAG AAACAACAGTAACAAACAGTAACGAAAAAAAAGTATCATAGTTCGGATGA CACCTTCCAAAAAAGTGAAGAAGGGGGGATCAGAAATTTTCATTAAAAAG GGGGGATAGCAAGGACGGAGGGGGGATTGTTTAAGAAGGCGGGGCTTACA TATATTGTAGATTATTTTCCAACACTGTTACTACACTGTTCACTAAAAAG TGGTATTATATTTGCCAAACTTCATTTTTCTTCACTGTTTCCCTTCACTT TTTACCATAAACAAATAGAGAGAGAAAACAAGGGAATTGATTTTTACAAG GGGGTAGCAGGGAGAAGGGGATTATCGGATCGCACTATTCACTATATATT TTCGAAAATTTAGCCCAAATCCCTTGGGGATAGGCATTTTTGGGGGGGAT GCCAAGAAGGGGACCCCTTTCCGCACTATGAGTATATTACTTTTTCGTAT TCTAACCTTAAAAATTATAATACCCTAAATTATTATAGGTATCATTGATT ATCTATTAACAAAAAAATAATGCAATGATTTTTTTAACTAGAATTCAGAT GAATTTCTTTAATTTGTACTGCAGTCCTATTGATAATTACATTTTATCTT TGAATAACATTATAACTGTTTCTTTAATTTTTAGGAAAATCACGAACATG GGAGACACAATATCCCAATCTATCAGGAATGTTGGTGAACTAGTTAAAAG CCAAGGGGAAAAGAATGAAGCCCTCGAAACAAAACTTCAATCCATCGAAA ACAAATTGAGCCAGCACCTGGAAACAATTAAAAAGTCAACAAAAGTAACT GTTCCAAAATTTTTGCAGGTAAGACTTTGCAGGACTTTGATTCATTACCC TAAATCAATATTATTAAAGACTTTCCAATGGTTTAAATTTAGTTTTGTCA CTAATATTTTCATTTATCATCGTCACTTGAAGGAGCAAAAAAAAANNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNGGGGTTGAGGAATTTTCATTTTTAAG AGGGGGTTGAGCTAAAAAAAGGGGTGTCATTTTTAAGGGGGGCTTGATAC CCCTCTGCCCACTTTGATTTTAAGACCTAATCCCTTTAAAGTAGGGCTAT CTTGGGATTGGTGACACAGGGGTGAGTTGAAATTAAAGTTTTATGCTAGA AATTTTGAAATTTTCATAGCTCATAGACATTATTTTCTTGTTTAGAAAAG GATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAGAAAAATGGGATTTAC TTGAACAGTAAGTTGTATAATTCTTTGATTTGTTTGCATTTTAGGTCCAA TTTATAACAGTTTGGTAAACTTTGTAACAATTCAAGTCTTACAATTTAAA GTATCTATTCGAGTGAAACGAACAGTCATTTTGGTAGTTATTTTGACGTT GTATCACCTTTTGATTAACAAAGTATTTTTTCTTTTGTTTCTGTTAGATG GAATTCAGAGGTTAATGGGAACATAACGGACCAAATCCTTGCGGACATTC ATGCCCAGTTGAAGGGAAAACAACCTGAAGATGTGATTTTAGGTAACACA TGGGACTACTTTTAATCTGTATCTTTACCTCATCTCTTACTGAAATAAGC AGAGTCAATGAAAACTTTGCGAAGCTTAGCTAAGGATGACTACAACCGTC GATCATAATATATATTGGTTTAATATTGTAATTAGAAAAACGAAGTGATA ACAATTTAGGTGGTAAATTTAGGCTCCTAATTATAAATTTGAATGAATAT ACTGATTGGACTTTTCTTACAGCGGGTTTGAAGACACATTTTACATCAAT TAAACGCGAACACGATGCGGAGCTGAATGATCCAGGGAAATACAGAGAAG ACAAGCTTAAGAAGAAATATCGCGCCAGAAAACAACGGGTAAGCTTTGCA ACCTTAAATGCTTAAGCTAGCCTCACAAAAAATTACTTCGTGGGTAATCA AAATTCTAAACTAAGGTCACACTTGTTTTAGTGTGTACAAGATATTGTCT CTTCTCAAACAATCATTGGTTGATATAACTCAGAGGACGGAAAAGAAAAG CTTTCAGTTCCTTTTCACTTCCATTTTAGCTTTATAATGCACGTACAAAA TATATCAAGGATGGTTGGGAGGAGGAATTGTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030575XLOC_030575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048050-exon-scaffold_14-1575043694:805017..805397TCONS_00048050-exon-scaffold_14-1575043694:805017..805397Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:804263..804421TCONS_00048050-exon-scaffold_14-1575043694:804263..804421Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:803188..803289TCONS_00048050-exon-scaffold_14-1575043694:803188..803289Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:802792..802911TCONS_00048050-exon-scaffold_14-1575043694:802792..802911Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:800480..800663TCONS_00048050-exon-scaffold_14-1575043694:800480..800663Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:799391..799452TCONS_00048050-exon-scaffold_14-1575043694:799391..799452Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:799106..799200TCONS_00048050-exon-scaffold_14-1575043694:799106..799200Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:798760..798875TCONS_00048050-exon-scaffold_14-1575043694:798760..798875Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1575043694:798513..798568TCONS_00048050-exon-scaffold_14-1575043694:798513..798568Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:805017..805397TCONS_00048050-exon-scaffold_14-1510915933:805017..805397Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:804263..804421TCONS_00048050-exon-scaffold_14-1510915933:804263..804421Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:803188..803289TCONS_00048050-exon-scaffold_14-1510915933:803188..803289Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:802792..802911TCONS_00048050-exon-scaffold_14-1510915933:802792..802911Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:800480..800663TCONS_00048050-exon-scaffold_14-1510915933:800480..800663Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:799391..799452TCONS_00048050-exon-scaffold_14-1510915933:799391..799452Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:799106..799200TCONS_00048050-exon-scaffold_14-1510915933:799106..799200Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:798760..798875TCONS_00048050-exon-scaffold_14-1510915933:798760..798875Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1510915933:798513..798568TCONS_00048050-exon-scaffold_14-1510915933:798513..798568Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:805017..805397TCONS_00048050-exon-scaffold_14-1491911889:805017..805397Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:804263..804421TCONS_00048050-exon-scaffold_14-1491911889:804263..804421Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:803188..803289TCONS_00048050-exon-scaffold_14-1491911889:803188..803289Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:802792..802911TCONS_00048050-exon-scaffold_14-1491911889:802792..802911Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:800480..800663TCONS_00048050-exon-scaffold_14-1491911889:800480..800663Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:799391..799452TCONS_00048050-exon-scaffold_14-1491911889:799391..799452Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:799106..799200TCONS_00048050-exon-scaffold_14-1491911889:799106..799200Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:798760..798875TCONS_00048050-exon-scaffold_14-1491911889:798760..798875Clytia hemisphaericaexon
TCONS_00048050-exon-scaffold_14-1491911889:798513..798568TCONS_00048050-exon-scaffold_14-1491911889:798513..798568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:798513..805397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 2.31595 2.80124 3.57183 5.53755 5.74005 2.32511 3.64724 4.14662 2.92255 3.32174 4.24919 3.29779 4.27039 3.10742 3.40718 4.58373 1.10459 1.65878 0.517994 1.48413 0.84258 0 1.92079 1.49114 0.180703 0.552624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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