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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048053 ID=TCONS_00048053|Name=TCONS_00048053|organism=Clytia hemisphaerica|type=transcript|length=2085bp TTTTTTCTTGTTGCCAGCAATTTGCCGGCAAAAGTGCCCCTTAGGTCAAA ACCttatctaaaaatagatttttcacAATTGTTGCCGGCAAACTGTCTAC TGGCTTATTGCCAGCAGCAATTGATGAATTGCCAGACTGAACAAGAGTGT TGCTGGCAAAATGCCGATGGATTTGCCGGTATCAGCCGGAAAAAAATAAG TAGTATTTTGAGTTCAGAGTAGTAATTTTTTGGATTAATTGCTAGATGTT GAAAATGTGGAAGCAGAGAAATCTTAAAATACTTTATAGATATCTGTGGC AGAGAGGAATTTTTTACATGTTTCGATGCAAAAGCCTATTCAAAGCAAAA GCCAAATTGTATATTTTATAATTTGCTGTTCGCATTAATTCAAATTAAAT GCCTCCAGGCTGTTCCAGGTTCAATGCTGGCcgaattgccatcccatgtt ttgtcagatatttCCAAGTTAGAACCGTTGATGGTAGATggcattagaac aataaaagatttcataattcaaaaagaaaaactttcaaaatatccAAAGC CTTTTaagaatttgttcttaaagacagcAAATTCTGTTTTGAGGCTATTA ACAATTCCACAAAGGAGGTGAAGTACTCAggccaaactttcaaaacaccc aaattgaaagcagtaattatgacatCATACCTTCTTTCCCTgtgcaagaa aatattaaacCCCCATTTGGATATATGGCGTTTAGCTCACCCTGTTAGTA AAAACAAGTATTTTGCcgctttaaaaatttgaataatcgaAAAAAAATGA CTTAACAGTATGAAGATGAGCTGAATTAAGAGCCTTTTAAAGTTGCAGAG CCTGGACTTAAACTTATTCAAATGAAGGTGAATGTATTATGCATTCTGTA TTTAATTGAAAGGGCAGCTGACATTGAAAAATGAGGTTAagtatattttt taatgaacCTGGTAAATCACGCATTTTAGTGCTTTAGTGCCTTGCATGAA GAAATTAGTTGCCTCTGGTGCATGATTTAACTTATTTATacctaagggaa gaaattttcacgggAATCCAATTTTGCGGTTCatcaatattaaaaatttt tgcaggaattaaatttcgctgcTCACTGCAATCTTTGATTTGTTATTTga atacacattgttttttttttaataagaaacacctttataaggaacttgag gctgaaatttgactATGAATCTTATCTTATCACAAACTATATATACATCT ATTCGAAATATTGAACAAACAGAATGAAAAAGGACATTAAAAGAAgcatt ttttgggtatttttagGGATAGGGTGACTATATTTTCTATGAAGCTGGAC TtgtttgttggtttgccgttgccgaccctagattttggaggagGGTTGGC CAGTTGGAAATTCTTTTTATTATTACAATTTTGTATGGAGATAATCAACA ACATTTAAgtaattttgaaaggaaaacgGAAGAGCTAGAAGGGAATTCAC TTTTCTTAAGCTTAAGATAGAATGAGACGGACAAAATACAGGTTGTGCTT TGAAGcTTCTCACTCACAGTCACCACGACAATCGCCGAACTGTGCACGAA ATAATGgcgctatgaaaaaaaaacatGCAAACTTCATTGTTCCTGAAACC AATGATCAACGACCTTCGACACAGAAAAAATGCCACTCAAAATATGGAGA TGGCGGAAAGGACTTCAAAGAAATGTCGAATAAACaatatcaATATTCCG TCATGATGGAGTTGCAAGTTTTGAAACGAAATCAAAACAGAATTCTCGCC ATCCTGGAAAACCAAGAAACAAGCACTTCAGAACAGACACTTGAGCCACC AGAACCATTGGATACGATGGAAGAATTCGATATCGAGGAAGAAAAACTCA AAGCACACGATAAGAGAGTGATAAAGCGAAAAATGATCAAGCAAATAGGT GGCAAAGACATCCGTCAAGCAATCCGCTTAGCACTCGACAGCATGATGTC GAGAAGACTACAAAGCAAGTTTTCAAAGTCGGGCttgcagaaaaaaagaa aatttaaaggcACTTATCATTATAAATGCTTAGAG Run BLAST on NCBI protein sequence of TCONS_00048053-protein >TCONS_00048053-protein ID=TCONS_00048053-protein|Name=TCONS_00048053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MRRTKYRLCFEASHSQSPRQSPNCARNNGAMKKKHANFIVPETNDQRPST QKKCHSKYGDGGKDFKEMSNKQYQYSVMMELQVLKRNQNRILAILENQET STSEQTLEPPEPLDTMEEFDIEEEKLKAHDKRVIKRKMIKQIGGKDIRQA IRLALDSMMSRRLQSKFSKSGLQKKRKFKGTYHYKCLE Run BLAST on NCBI transcript from alignment at scaffold_14:847510..850656- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048053 ID=TCONS_00048053|Name=TCONS_00048053|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at scaffold_14:847510..850656- (Clytia hemisphaerica) TTTTTTCTTGTTGCCAGCAATTTGCCGGCAAAAGTGCCCCTTAGGTCAAA
ACCTTATCTAAAAATAGATTTTTCACAATTGTTGCCGGCAAACTGTCTAC
TGGCTTATTGCCAGCAGCAATTGATGAATTGCCAGACTGAACAAGAGTGT
TGCTGGCAAAATGCCGATGGATTTGCCGGTATCAGCCGGAAAAAAATAAG
TAGTATTTTGAGTTCAGAGTAGTAATTTTTTGGATTAATTGCTAGATGTT
GAAAATGTGGAAGCAGAGAAATCTTAAAATACTTTATAGATATCTGTGGC
AGAGAGGAATTTTTTACATGTTTCGATGCAAAAGCCTATTCAAAGCAAAA
GCCAAATTGTATATTTTATAATTTGCTGTTCGCATTAATTCAAATTAAAT
GCCTCCAGGCTGTTCCAGGTTCAATGCTGGCCGAATTGCCATCCCATGTT
TTGTCAGATATTTCCAAGTTAGAACCGTTGATGGTAGATGGCATTAGAAC
AATAAAAGATTTCATAATTCAAAAAGAAAAACTTTCAAAATATCCAAAGC
CTTTTAAGAATTTGTTCTTAAAGACAGCAAATTCTGTTTTGAGGCTATTA
ACAATTCCACAAAGGAGGTGAAGTACTCAGGCCAAACTTTCAAAACACCC
AAATTGAAAGCAGTAATTATGACATCATACCTTCTTTCCCTGTGCAAGAA
AATATTAAACCCCCATTTGGATATATGGCGTTTAGCTCACCCTGTTAGTA
AAAACAAGTATTTTGCCGCTTTAAAAATTTGAATAATCGAAAAAAAATGA
CTTAACAGTATGAAGATGAGCTGAATTAAGAGCCTTTTAAAGTTGCAGAG
CCTGGACTTAAACTTATTCAAATGAAGGTGAATGTATTATGCATTCTGTA
TTTAATTGAAAGGGCAGCTGACATTGAAAAATGAGGTTAAGTATATTTTT
TAATGAACCTGGTAAATCACGCATTTTAGTGCTTTAGTGCCTTGCATGAA
GAAATTAGTTGCCTCTGGTGCATGATTTAACTTATTTATACCTAAGGGAA
GAAATTTTCACGGGAATCCAATTTTGCGGTTCATCAATATTAAAAATTTT
TGCAGGAATTAAATTTCGCTGCTCACTGCAATCTTTGATTTGTTATTTGA
ATACACATTGTTTTTTTTTTAATAAGAAACACCTTTATAAGGAACTTGAG
GCTGAAATTTGACTATGAATCTTATCTTATCACAAACTATATATACATCT
ATTCGAAATATTGAACAAACAGAATGAAAAAGGACATTAAAAGAAGCATT
TTTTGGGTATTTTTAGGGATAGGGTGACTATATTTTCTATGAAGCTGGAC
TTGTTTGTTGGTTTGCCGTTGCCGACCCTAGATTTTGGAGGAGGGTTGGC
CAGTTGGAAATTCTTTTTATTATTACAATTTTGTATGGAGATAATCAACA
ACATTTAAGTAATTTTGAAAGGAAAACGGAAGAGCTAGAAGGGAATTCAC
TTTTCTTAAGCTTAAGATAGAATGAGACGGACAAAATACAGGTTGTGCTT
TGAAGGTTTGACATTTTTGAAGAAAAAAATTTCTCTTCTTTAAAATAGCA
ATAAATTTTTTTGGATTGGCAGATTTTGAGGTAAGGTCGGTTGGGTGATG
GCAATAAGTCCAGCCTGAAAAGTGCTTAGTAATCTAGGGACTATGAAATT
TCGCCGTTCACTGATTATGAAAAATTTTGTGGTTCACCTATTTTGAAAAA
TTTCGCAGGAAGTTAACTTTGCAGATTGCCGATTTTGTAAATCTCTGTGA
GAACTTTATTTATTTTTATTCAGCATACATTTTCATATTTTTCATAGCTT
CTCACTCACAGTCACCACGACAATCGCCGAACTGTGCACGAAATAATGGC
GCTATGAAAAAAAAACGTAAAAAAAATATATTTTTTTTTATTAGCAATTT
CAGTACCGAATATTTTCAAAGCAGCCCTGTTCAGAAAGCTCGAGCTTATC
CTAGTTTGTTTTTTTTTTACTTTTAGATGCAAACTTCATTGTTCCTGAAA
CCAATGATCAACGACCTTGTAAGTCTTTTTTAAATTAAGCACAGATGATT
TTTTTGTTTTTTTCTTGTGAGTGAAGAATTCTTTTGCCTTGATCAATGCT
TCCTGATTTTTTTTTACTTTCTGGGAAGGACTTGACAGATATTTTGTTGA
GATAGAGAAACATACTATACTATTTTTTTAATTTCTTTTTGCAGCGACAC
AGAAAAAATGCCACTCAAAATATGGAGATGGCGGAAAGGACTTCAAAGAA
ATGTCGAATAAACGTAAGTTTTCAAGCTCAATATTACATTCTTGTTTTGT
ACAAAGAAATAAAGTCCATTCGCTTTGAGTATGCACTCGTTTTTTCTACC
ACGTGGGAAACAATCTCAAAGGAAGTAAGTCTAATTACGATGACACGGTT
TCTACATGGTAGCTAAAACGAGTGCACACTTAAAGCGAATGTACTCTAGT
TTGGTTGGATTTACATAAAAGCAAGAGTATAGAGTATAGTCATTCATGCG
GGCTCCAGACATTCGGTAAGAAAATGAGCAAGAGTGTAACCCACCCTTTG
TTTCCATATCACATCAGACTAATTATTACACTTTTTTTTCAGAATATCAA
TATTCCGTCATGATGGAGTTGCAAGTTTTGAAACGAAATCAAAACAGAAT
TCTCGCCATCCTGGAAAACCAAGAAACAAGCACTTCAGAACAGACACTTG
AGCCACCAGAACCATTGGATACGATGGAAGAATTCGATATCGAGGAAGAA
AAACTCAAAGCACACGATAAGAGAGTGATAAAGGTAAAAATAATCAATAC
TTTTTATATACCTTTTCAATACCTCGATCTTCTTTTTACCCGACAACTTC
ACGCTTCACAGTAGGCCCTCGTGAAATTTTTTTATTTCTTGTGAAAATAT
ATAGTAATTAATGTATTATTTTGAATTTTATCTTGTAGCGAAAAATGATC
AAGCAAATAGGTGGCAAAGACATCCGTCAAGCAATCCGCTTAGCACTCGA
CAGCATGATGTCGAGAAGACTACAAAGCAAGTTTTCAAAGTCGGGCTTGC
AGAAAAAAAGAAAATTTAAAGGCACTTATCATTATAAATGCTTAGAG Coding sequence (CDS) from alignment at scaffold_14:847510..850656- >TCONS_00048053 ID=TCONS_00048053|Name=TCONS_00048053|organism=Clytia hemisphaerica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_14:847510..850656- (Clytia hemisphaerica) CGAAAAATGATCAAGCAAATAGGTGGCAAAGACATCCGTCAAGCAATCCG CTTAGCACTCGACAGCATGATGTCGAGAAGACTACAAAGCAAGTTTTCAA AGTCGGGCTTGCAGAAAAAAAGAAAATTTAAAGGCACTTATCATTATAAA TGCTTAGAGAATATCAATATTCCGTCATGATGGAGTTGCAAGTTTTGAAA CGAAATCAAAACAGAATTCTCGCCATCCTGGAAAACCAAGAAACAAGCAC TTCAGAACAGACACTTGAGCCACCAGAACCATTGGATACGATGGAAGAAT TCGATATCGAGGAAGAAAAACTCAAAGCACACGATAAGAGAGTGATAAAG CGACACAGAAAAAATGCCACTCAAAATATGGAGATGGCGGAAAGGACTTC AAAGAAATGTCGAATAAACATGCAAACTTCATTGTTCCTGAAACCAATGA TCAACGACCTTCTTCTCACTCACAGTCACCACGACAATCGCCGAACTGTG CACGAAATAATGGCGCTATGAAAAAAAAACATGAGACGGACAAAATACAG GTTGTGCTTTGAAGCGAAAAATGATCAAGCAAATAGGTGGCAAAGACATC CGTCAAGCAATCCGCTTAGCACTCGACAGCATGATGTCGAGAAGACTACA AAGCAAGTTTTCAAAGTCGGGCTTGCAGAAAAAAAGAAAATTTAAAGGCA CTTATCATTATAAATGCTTAGAGAATATCAATATTCCGTCATGATGGAGT TGCAAGTTTTGAAACGAAATCAAAACAGAATTCTCGCCATCCTGGAAAAC CAAGAAACAAGCACTTCAGAACAGACACTTGAGCCACCAGAACCATTGGA TACGATGGAAGAATTCGATATCGAGGAAGAAAAACTCAAAGCACACGATA AGAGAGTGATAAAGCGACACAGAAAAAATGCCACTCAAAATATGGAGATG GCGGAAAGGACTTCAAAGAAATGTCGAATAAACATGCAAACTTCATTGTT CCTGAAACCAATGATCAACGACCTTCTTCTCACTCACAGTCACCACGACA ATCGCCGAACTGTGCACGAAATAATGGCGCTATGAAAAAAAAACATGAGA CGGACAAAATACAGGTTGTGCTTTGAAGCGAAAAATGATCAAGCAAATAG GTGGCAAAGACATCCGTCAAGCAATCCGCTTAGCACTCGACAGCATGATG TCGAGAAGACTACAAAGCAAGTTTTCAAAGTCGGGCTTGCAGAAAAAAAG AAAATTTAAAGGCACTTATCATTATAAATGCTTAGAGAATATCAATATTC CGTCATGATGGAGTTGCAAGTTTTGAAACGAAATCAAAACAGAATTCTCG CCATCCTGGAAAACCAAGAAACAAGCACTTCAGAACAGACACTTGAGCCA CCAGAACCATTGGATACGATGGAAGAATTCGATATCGAGGAAGAAAAACT CAAAGCACACGATAAGAGAGTGATAAAGCGACACAGAAAAAATGCCACTC AAAATATGGAGATGGCGGAAAGGACTTCAAAGAAATGTCGAATAAACATG CAAACTTCATTGTTCCTGAAACCAATGATCAACGACCTTCTTCTCACTCA CAGTCACCACGACAATCGCCGAACTGTGCACGAAATAATGGCGCTATGAA AAAAAAACATGAGACGGACAAAATACAGGTTGTGCTTTGAAGCGAAAAAT GATCAAGCAAATAGGTGGCAAAGACATCCGTCAAGCAATCCGCTTAGCAC TCGACAGCATGATGTCGAGAAGACTACAAAGCAAGTTTTCAAAGTCGGGC TTGCAGAAAAAAAGAAAATTTAAAGGCACTTATCATTATAAATGCTTAGA GAATATCAATATTCCGTCATGATGGAGTTGCAAGTTTTGAAACGAAATCA AAACAGAATTCTCGCCATCCTGGAAAACCAAGAAACAAGCACTTCAGAAC AGACACTTGAGCCACCAGAACCATTGGATACGATGGAAGAATTCGATATC GAGGAAGAAAAACTCAAAGCACACGATAAGAGAGTGATAAAGCGACACAG AAAAAATGCCACTCAAAATATGGAGATGGCGGAAAGGACTTCAAAGAAAT GTCGAATAAACATGCAAACTTCATTGTTCCTGAAACCAATGATCAACGAC CTTCTTCTCACTCACAGTCACCACGACAATCGCCGAACTGTGCACGAAAT AATGGCGCTATGAAAAAAAAACATGAGACGGACAAAATACAGGTTGTGCT TTGAAGCGAAAAATGATCAAGCAAATAGGTGGCAAAGACATCCGTCAAGC AATCCGCTTAGCACTCGACAGCATGATGTCGAGAAGACTACAAAGCAAGT TTTCAAAGTCGGGCTTGCAGAAAAAAAGAAAATTTAAAGGCACTTATCAT TATAAATGCTTAGAGAATATCAATATTCCGTCATGATGGAGTTGCAAGTT TTGAAACGAAATCAAAACAGAATTCTCGCCATCCTGGAAAACCAAGAAAC AAGCACTTCAGAACAGACACTTGAGCCACCAGAACCATTGGATACGATGG AAGAATTCGATATCGAGGAAGAAAAACTCAAAGCACACGATAAGAGAGTG ATAAAGCGACACAGAAAAAATGCCACTCAAAATATGGAGATGGCGGAAAG GACTTCAAAGAAATGTCGAATAAACATGCAAACTTCATTGTTCCTGAAAC CAATGATCAACGACCTTCTTCTCACTCACAGTCACCACGACAATCGCCGA ACTGTGCACGAAATAATGGCGCTATGAAAAAAAAACATGAGACGGACAAA ATACAGGTTGTGCTTTGAAGCGAAAAATGATCAAGCAAATAGGTGGCAAA GACATCCGTCAAGCAATCCGCTTAGCACTCGACAGCATGATGTCGAGAAG ACTACAAAGCAAGTTTTCAAAGTCGGGCTTGCAGAAAAAAAGAAAATTTA AAGGCACTTATCATTATAAATGCTTAGAGAATATCAATATTCCGTCATGA TGGAGTTGCAAGTTTTGAAACGAAATCAAAACAGAATTCTCGCCATCCTG GAAAACCAAGAAACAAGCACTTCAGAACAGACACTTGAGCCACCAGAACC ATTGGATACGATGGAAGAATTCGATATCGAGGAAGAAAAACTCAAAGCAC ACGATAAGAGAGTGATAAAGCGACACAGAAAAAATGCCACTCAAAATATG GAGATGGCGGAAAGGACTTCAAAGAAATGTCGAATAAACATGCAAACTTC ATTGTTCCTGAAACCAATGATCAACGACCTTCTTCTCACTCACAGTCACC ACGACAATCGCCGAACTGTGCACGAAATAATGGCGCTATGAAAAAAAAAC ATGAGACGGACAAAATACAGGTTGTGCTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048053-exon-scaffold_14-1575043694:849102..850656 | TCONS_00048053-exon-scaffold_14-1575043694:849102..850656 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1575043694:848741..848809 | TCONS_00048053-exon-scaffold_14-1575043694:848741..848809 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1575043694:848589..848630 | TCONS_00048053-exon-scaffold_14-1575043694:848589..848630 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1575043694:848344..848412 | TCONS_00048053-exon-scaffold_14-1575043694:848344..848412 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1575043694:847824..848014 | TCONS_00048053-exon-scaffold_14-1575043694:847824..848014 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1575043694:847510..847668 | TCONS_00048053-exon-scaffold_14-1575043694:847510..847668 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:849102..850656 | TCONS_00048053-exon-scaffold_14-1510915933:849102..850656 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:848741..848809 | TCONS_00048053-exon-scaffold_14-1510915933:848741..848809 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:848589..848630 | TCONS_00048053-exon-scaffold_14-1510915933:848589..848630 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:848344..848412 | TCONS_00048053-exon-scaffold_14-1510915933:848344..848412 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:847824..848014 | TCONS_00048053-exon-scaffold_14-1510915933:847824..848014 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1510915933:847510..847668 | TCONS_00048053-exon-scaffold_14-1510915933:847510..847668 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:849102..850656 | TCONS_00048053-exon-scaffold_14-1491911889:849102..850656 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:848741..848809 | TCONS_00048053-exon-scaffold_14-1491911889:848741..848809 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:848589..848630 | TCONS_00048053-exon-scaffold_14-1491911889:848589..848630 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:848344..848412 | TCONS_00048053-exon-scaffold_14-1491911889:848344..848412 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:847824..848014 | TCONS_00048053-exon-scaffold_14-1491911889:847824..848014 | Clytia hemisphaerica | exon |
TCONS_00048053-exon-scaffold_14-1491911889:847510..847668 | TCONS_00048053-exon-scaffold_14-1491911889:847510..847668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_14 | supercontig | scaffold_14:847510..850656 - |
Blast
The following BLAST results are available for this feature:
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