|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048113 ID=TCONS_00048113|Name=TCONS_00048113|organism=Clytia hemisphaerica|type=transcript|length=1630bp
aatgaaagttctcttttaccttgaagtttttcttttaaaaatagatatta
tatttcaaaatgcattggatcaagcactgggcaaagtttatgtgattcag
ctcatcatgtacacaaaaattagtcaatatttttatttgtcatTATAGat
aTTCAGAATGCTCCGTTCAAAGTTCTAATCGTGCTGTAATTTTGCCGTGG
TGGAGCAATCCTATGATTTAGTTCAATAcagtaaacaaagatggcggccg
ATGGCATCACCTTCTGGAAAACCTTTTTAACTGTTCTTGTTCATTTCAAg
GATCAAGAAGTTGGATGGGAAACTTGTGGAGAACATATGTCTTCAGTATA
CGCTGAGACCACGAAATGGAGGATTCCGATGTTACGAAATGATATTTCAC
ACAACGTCTTGTTAtaattttgagattatgacttgggatATTTCACACGA
CGTTCTGGTATCATTTTGAGCTAACGTGTTGAGATATTTCACACGACGTG
TCCTGCCTGGTATGATATTGAGgattgagattatgacttgggatATTTCA
CCACGCGACGTCCTGGTATAATTTTGAGATATGTATTGGGATATTTCACA
CAATATCACTGGTATAATTTTTAGATTATTATGACNGTTGGGATAATTCA
CACAATATCATTGGTATAATTTTTAGATTATTATGACTTGGGATATTTCA
CACGACGTCCTGGTAtaattttgagattatgactttgGATATTTCACGCG
ACGTCCTGGTATAATTTGgagattatgacttgggatATTTCACGCGACGT
CCTGGTATAATTCATAATTTTGAGATTAATACTTGGGATATTTCACACGA
CGTCCTGGTATAATTTTGATATTATgacttcccagctggcacacaacatt
gtttcaacgtttatctaacgttcacaacgtccatttaacgttagatgaac
gttgaaacaacgttgtgtgccagctggattGGGATATTTCACACGGCGTC
CTGGTATGATTTTGATATTATGACTTGGGATATTTCACACGGCGTCCTGG
TATgattttgagattatgacttgggatATTTCACATGGCGTCCTGGTATG
ATTTTTAGATTATATTTCACACAATGTCCTGGtataatttgaaattataa
cttggaatattttacACCACCGTAACCTATTGTTATTGAATAATTCAACT
CAAAATTGCGTATATACCGTCAATAGCTTTAAATTGTGAAAGCCTTCCTG
GTGAGGGTAGCGTATTTACATTATTTTCTATCTATGATTTGCGactatgt
taattaaatgactttggaggctCAGTAAAATGATGGCCgtattgctgtcc
catgttttgtcagactgtcccaagttagagccgttgacggtaCTTGGAAA
ATTTTATGTCACCTCCTGGCTAGAATAATATGAGATTTGTTGGAGAACAG
CTTGCGATCATTTGTGACCAtgattatataattttttagaaaatttgata
aCAAATGTAGAGGAGAATATAAACACATGCATTTAGAATCTTTTTAGATT
CTTTTATTTAGTTTTAGTGTCTTTTTAACCTAGCTGAGGTTAATAGCCTt
ttatcgtcaacttgaaaaacataaaaaagg Run BLAST on NCBI transcript from alignment at scaffold_140:15652..17759- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048113 ID=TCONS_00048113|Name=TCONS_00048113|organism=Clytia hemisphaerica|type=transcript|length=2108bp|location=Sequence derived from alignment at scaffold_140:15652..17759- (Clytia hemisphaerica)
AATGAAAGTTCTCTTTTACCTTGAAGTTTTTCTTTTAAAAATAGATATTA
TATTTCAAAATGCATTGGATCAAGCACTGGGCAAAGTTTATGTGATTCAG
CTCATCATGTACACAAAAATTAGTCAATATTTTTATTTGTCATTATAGGT
AAATGATAGAATAGATGTAATATTTTCTAGAAACTTTTGTAATTTTCTTT
GTTATCTTGTTTATTGCCACTGCAGGGAGCCTAAAGCCCCCGAGGATGGC
ATTCATAGCTTCACGCATAAGGAAAGTTGGGCAAACATCTCATAATTTTG
TGTTTGCGTTTGCGCACGCGTTTTTCAGTATTTTAGTTTCGCTTAACGGG
ACATTATCAATTAATGGTTATTTGATTTCCCGGAATGACAAGCGCGCTTC
ATTTTTGTTTTAGATATTCAGAATGCTCCGTTCAAAGTTCTAATCGTGCT
GTAATTTTGCCGTGGTGGAGCAATCCTATGATTTAGTTCAATACAGTAAA
CAAAGATGGCGGCCGATGGCATCACCTTCTGGAAAACCTTTTTAACTGTT
CTTGTTCATTTCAAGGTAAAATTGAATATATTCTGTTATGTTTCTTTAGC
TTGATCTGTTTTATTTTTGCAGCTACTAAAGTTTTGAAAAACAGATGACA
GGATGATCTCACAGTTTTATAATTTACAGATCTGGACATTAAACCATTTT
AAAAAAAGGTTCTATTTTTCAGGGGAATTTTCAAGGGGAATTTGAGCAGC
TCATTAATTTTGTCTCTCACCTCTCCAGGATCAAGAAGTTGGATGGGAAA
CTTGTGGAGAACATATGTCTTCAGTATACGCTGAGACCACGAAATGGAGG
ATTCCGATGTTACGAAATGATATTTCACACAACGTCTTGTTATAATTTTG
AGATTATGACTTGGGATATTTCACACGACGTTCTGGTATCATTTTGAGCT
AACGTGTTGAGATATTTCACACGACGTGTCCTGCCTGGTATGATATTGAG
GATTGAGATTATGACTTGGGATATTTCACCACGCGACGTCCTGGTATAAT
TTTGAGATATGTATTGGGATATTTCACACAATATCACTGGTATAATTTTT
AGATTATTATGACNGTTGGGATAATTCACACAATATCATTGGTATAATTT
TTAGATTATTATGACTTGGGATATTTCACACGACGTCCTGGTATAATTTT
GAGATTATGACTTTGGATATTTCACGCGACGTCCTGGTATAATTTGGAGA
TTATGACTTGGGATATTTCACGCGACGTCCTGGTATAATTCATAATTTTG
AGATTAATACTTGGGATATTTCACACGACGTCCTGGTATAATTTTGATAT
TATGACTTCCCAGCTGGCACACAACATTGTTTCAACGTTTATCTAACGTT
CACAACGTCCATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCA
GCTGGATTGGGATATTTCACACGGCGTCCTGGTATGATTTTGATATTATG
ACTTGGGATATTTCACACGGCGTCCTGGTATGATTTTGAGATTATGACTT
GGGATATTTCACATGGCGTCCTGGTATGATTTTTAGATTATATTTCACAC
AATGTCCTGGTATAATTTGAAATTATAACTTGGAATATTTTACACCACCG
TAACCTATTGTTATTGAATAATTCAACTCAAAATTGCGTATATACCGTCA
ATAGCTTTAAATTGTGAAAGCCTTCCTGGTGAGGGTAGCGTATTTACATT
ATTTTCTATCTATGATTTGCGACTATGTTAATTAAATGACTTTGGAGGCT
CAGTAAAATGATGGCCGTATTGCTGTCCCATGTTTTGTCAGACTGTCCCA
AGTTAGAGCCGTTGACGGTACTTGGAAAATTTTATGTCACCTCCTGGCTA
GAATAATATGAGATTTGTTGGAGAACAGCTTGCGATCATTTGTGACCATG
ATTATATAATTTTTTAGAAAATTTGATAACAAATGTAGAGGAGAATATAA
ACACATGCATTTAGAATCTTTTTAGATTCTTTTATTTAGTTTTAGTGTCT
TTTTAACCTAGCTGAGGTTAATAGCCTTTTATCGTCAACTTGAAAAACAT
AAAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048113-exon-scaffold_140-1575043694:17612..17759 | TCONS_00048113-exon-scaffold_140-1575043694:17612..17759 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1575043694:17195..17346 | TCONS_00048113-exon-scaffold_140-1575043694:17195..17346 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1575043694:15652..16981 | TCONS_00048113-exon-scaffold_140-1575043694:15652..16981 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1510915933:17612..17759 | TCONS_00048113-exon-scaffold_140-1510915933:17612..17759 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1510915933:17195..17346 | TCONS_00048113-exon-scaffold_140-1510915933:17195..17346 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1510915933:15652..16981 | TCONS_00048113-exon-scaffold_140-1510915933:15652..16981 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1491911889:17612..17759 | TCONS_00048113-exon-scaffold_140-1491911889:17612..17759 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1491911889:17195..17346 | TCONS_00048113-exon-scaffold_140-1491911889:17195..17346 | Clytia hemisphaerica | exon |
| TCONS_00048113-exon-scaffold_140-1491911889:15652..16981 | TCONS_00048113-exon-scaffold_140-1491911889:15652..16981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:15652..17759 - |
Blast
The following BLAST results are available for this feature:
|
