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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048115 ID=TCONS_00048115|Name=TCONS_00048115|organism=Clytia hemisphaerica|type=transcript|length=567bp
TTCAATTCTAAAAACTCACACAAGAAGGATGTATGTGGAAGATGTTGAGA
TGCGTATATAGATACAAGTTTTAGAGTTCAATATTTCAAGTTCAATCTTT
TGTCAATCATTTTCATGTACCTGTATTCACTTgccttcaaatttggcatg
tggcTATCCGGTCTTTGATCCGGGGGATGGATGGTTCAACCGACGATATC
CGAAGAAGCTTAAGCTCGACCAAAAAAGTTTCACGAAATGAAAGACTTGA
TCCTGGATTTGAAGGACGGCTCGTGTGGTCGTGCAACAACATATAAATTT
ATTAGTACTCAAATTTATGGCTGAATGGTTGGACTCCCTGTCTGGTGTAT
GACTGTTCATCTGCTTCCTGAATACTCTATATACAAATGTAGAAGATGCA
AATTTACACCTGTTGTCATGCTGCAATCGTATCAAGAAGACACAAACAGG
AGAAACTGAGAAACTCAGAAGCTGATGAAgcgaaaaagaaattcttcctT
CCCTATTCTTGTTGACTTaaatctactttctaaataaatCAAGAAGAAAT
CATTTATTACATTAACA Run BLAST on NCBI transcript from alignment at scaffold_140:66897..70326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048115 ID=TCONS_00048115|Name=TCONS_00048115|organism=Clytia hemisphaerica|type=transcript|length=3430bp|location=Sequence derived from alignment at scaffold_140:66897..70326- (Clytia hemisphaerica)
TTCAATTCTAAAAACTCACACAAGAAGGATGTATGTGGAAGATGTTGAGA
TGCGTATATAGATACAAGTTTTAGAGTTCAATATTTCAAGTTCAATCTTT
TGTCAATCATTTTCATGTACCTGTATTCACTTGCCTTCAAATTTGGCATG
TGGCTATCCGGTACGTTTGCCTCTTTGTTTGCCTTTGTGCCTTTCTTGTT
TGCCTCGTGTGCCTTTTTTGTTTGCCTTTGTGTCTTTCTTGTTTGCTTTT
TGTGCCTCCTTTTCATGCACATTTAGGTTGGGTCCGGTTTAGGTCTGGAC
ATTAGGCTAGGTCATTTTTAGGCATGTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAAGATCAATTTCTCTAGTTTATTTTCTAATTGTAAT
TTTTCAATCAATTTTTCAGTTTGAACATAATCAACCAGTTCCAAACGGAA
GCTGACTCCAATCTTTGTTCAAATTCCCCAACAACATCCCTAAGCATCAC
TCTGGCTTCCCTTGGATAGCGTAAAATTTCCTATCTAGCCCTCGTCTATA
TATCATTGGTCTCTCATTTATTCACATATAGTTTACAACATAGTCCCATA
TGCTTTGCAGAAACAATATCTAGTTATCTCACTCTTATTGGCAAACATTT
TATTTAAAGCAATGGATTCCAGAGTAGAGTGCTGTATCGTCTCAGCCGGA
GATTATATTTCCTTTACACAGTCGTCACTTTAAATCGTTAACTTCAAAGG
TTCAAACTGATATTTAACTCGAAAAAGAATTAATATCGTTAAGAAAAACT
ATAAGAGCAATAGACTTTTTCAACAACGATTTTAAGAACACCGGACACGC
AAAGTCCGGTGTTGGATAAGGATACTTTTTGCACCGGACAATCAAAACAC
CGGACATGACCAGTCTGATGTGTCTGGTGTTCCTTAATTTTTTTACGTCT
CCGTGTTCACACTGAATTAGAGACAGCCTTTGAACAATAAACATACATGA
AGCTCAATCCTTCAAAGGATATAAAGGCAATGCCATTTTGTGCCAGGCCA
TAAAAGACACATAGGTTTTTGATAGGCTGATATCAGTGTAACGGGTGGTA
ACATGGTAGCCAAAGTAGTGATTTTTCACTCATCTTGTTTTTTTGATGTT
GGATGGAGGCTTTGTCAAAAATTTTTAAGTTAAGTGAATCGATCTACTTT
TTAAACTTCAAAAAGCTTTTGAGAAATTTGATTGGCTTGTTTTTAATGTT
TTCTTGGATGGAACCAGGGGTTTAGTGACTTCAAATCTTTAAGATAGCCC
TTCAAACAGTCTTACTTCTTCCCAAAGATTCTCTAGAATTTCTGTAGGAA
AATCATATCAAAAAGGAGCCTAAATAATCTGCCTTATGGTAATAGATACT
AGATTTGAAGGTCAAAGCTTTTTTTGCGTTCCTTCAATACATTTTCTTTC
TCGTGCTTACTTCAGGTCTTTGATCCGGGGGATGGATGGTTCAACCGACG
ATATCCGAAGAAGCTTAAGCTCGACCAAAAAAGTTTCACGAAATGAAAGA
CTTGATCCTGGATTTGAAGGTAGGCATTATTTGAAACATTCTTATTTTGA
TCAAAAGTACTATTGGGCTTTTCCAGAAAAAGACCGTACACCCCCTGTTG
AGGAGCTCCAACCTTTTGTGAATTTACCCCCTTGGAATTCCAGGCAATTT
TAGGATCATACTCCTCTGGAATTCCGAATTTTGACAGATTTTCATTCATT
ACCCCCATGGAATTCTACTTATTTTTGACGGATTTTTGTCTACTGCTATG
GAATTCTGCTGCATTTCAAACCATACCCCCTTGGAATGGAAATGGACTCC
TCACCAGGGGGTGCACGGTTTTTTTTCTGGAAAAGCCCATTTGTTCTTTT
CAAGGCTGATGAAAATGGCAAAGGAAATGAACTGATGAAAATGGACAGTT
TTTTTGTGATTTTTGGACTTGCCCCGGTGGAGGTCCTATGAATTAACCGT
TGTCCGTTCGTACGCTCCTTCGTAATGAGCTTTTCTCAAGATTGGCTTTT
TCAAATTTTCTGATTTTTGGTAAAAATGTGCATGACTATAAACCCTTGAA
TGTGACGGAGCCCGATTTTCGAAAAAGAAAATTGGGGGGAAATTTGGGCC
AAAAAACGGCTAAAAACGGGTTTTTTGTACTTTGTGAAAAATTGGATCAT
TAGTTTTTTCTGGATTTTTCCACGAAATTAGGTATAAGATGGTTTCTAAA
CGTGTTTTTTTGTAAGAAACAAACGACTAGTTTTAAAAGATCATCAATAT
TTGTATTCTGAATGATTGATTAACGTTCATGCTCACGAAGATATCAATTA
TAAATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTT
GAGTTTATTTTTCTCTTCATTATGTAGGACGGCTCGTGTGGTCGTGCAAC
AACATATAAATTTATTAGTACTCAAATTTATGGCTGAATGGTTGGACTCC
CTGTCTGGTGTATGACTGTTCATCTGCTTCCTGAATACTCTATATACAAA
TGTAGAAGATGCAAATTTACACCTGTTGTCATGCTGCAATCGTATCAAGA
AGACACAAACAGGAGAAACTGAGAAACTCAGAAGCTGATGAAGCGAAAAA
GAAATTCTTCCTTCCCTATTCTTGTTGACTTAAATCTACTTTCTAAATAA
ATCAAGAAGAAATCATTTATTACATTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048115-exon-scaffold_140-1575043694:70167..70326 | TCONS_00048115-exon-scaffold_140-1575043694:70167..70326 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1575043694:68058..68161 | TCONS_00048115-exon-scaffold_140-1575043694:68058..68161 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1575043694:66897..67199 | TCONS_00048115-exon-scaffold_140-1575043694:66897..67199 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1510915933:70167..70326 | TCONS_00048115-exon-scaffold_140-1510915933:70167..70326 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1510915933:68058..68161 | TCONS_00048115-exon-scaffold_140-1510915933:68058..68161 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1510915933:66897..67199 | TCONS_00048115-exon-scaffold_140-1510915933:66897..67199 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1491911889:70167..70326 | TCONS_00048115-exon-scaffold_140-1491911889:70167..70326 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1491911889:68058..68161 | TCONS_00048115-exon-scaffold_140-1491911889:68058..68161 | Clytia hemisphaerica | exon |
| TCONS_00048115-exon-scaffold_140-1491911889:66897..67199 | TCONS_00048115-exon-scaffold_140-1491911889:66897..67199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:66897..70326 - |
Blast
The following BLAST results are available for this feature:
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