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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048116 ID=TCONS_00048116|Name=TCONS_00048116|organism=Clytia hemisphaerica|type=transcript|length=445bp
TATATAGATCGGAAGAGGTCTACGAGCCGTGAACAAAGGGCGTTCAAGGG
GCGGTGTACAAACCAACTGAATCAGGCTACGCTTCGAGGATTGGTTCTTT
CACGAGTGCGAAAGAGGAAACATACTCTTCATACTGCTTCCGCCCAATTC
CACACATTTATGTCAACCACTGGACGTAGCCTTTTTCGCACAATTCTACC
CATTTATCGTAACCACTGGGCGTAGCCGTTTTCGCCCAATCCCACCCATA
TTTCACAACCACTGGACGTAGCCGTTTTCCGGATGGCGCATCCNTCGTAA
CCACTGGACGTAGCCGTTTTCGCCCAATCCCACCCATTTTTCACAACCAC
TGGACGTAGCCGTTTTCCGCATGGCGCATCGACCGTTTTCCGAGGATTAA
AAAATCTGATTGGAAGGATGTATAATGACCGTATAGCGCATTGAC Run BLAST on NCBI transcript from alignment at scaffold_140:72375..74697- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048116 ID=TCONS_00048116|Name=TCONS_00048116|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at scaffold_140:72375..74697- (Clytia hemisphaerica)
TATATAGATCGGAAGAGGTCTACGAGCCGTGAACAAAGGGCGTTCAAGGG
GCGGTGTACAAACCAACTGAATCAGGCTACGCTTCGAGGATTGGTTCTTT
CACGTAAGTCTTTGTTACAATTTCATTGTTTATAAAAAGAGGAAAATGAG
AAATCTGATGAAGAGATATAATGTCTTATGGGAAAAATCAATGTTCTTCT
GTATATTCNATGAAGATTCTGACTTGTAGATTTATCAGAATTAAACGATT
TTTGTTTATTTTGAAAGAATGATGGCTATACTTAAAAATGAGCATGTTTT
TACTGGTTTGATACAGATTCAAGATAACATATTTGCGTCTAAAGGAAAAA
TTTTAACACCAAAATTAGATAAAAATTGCATATAACTCACTCTAGCTCCT
TGGATATTGAAAACAAGTTATGAAAACGGGATATAGGAAATTTTCTACAC
CTAATGCCTTTCAGAAAATGCAAATACATTAGTGACTTTAGAGGCTGGGT
AAAAGATATAGCATCTTGAAGGTCAACCAGTATTTTGGATCCCTAGAATC
AGCATTGACAAAACCTAAAATTCTAAATATGAGAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATTTTCAAAAGAGATTTGTTTTCAAAAACTTGATTAAGACGTT
GTTAAATCAAAATTGTTATTTTGAAAATTTCTAAATTTTCAGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTTTTCCCCC
TATTACCACTGGGCTTAATAATTTGATTTTAACTACACCTCCGTTTTGGG
GGGCCCCAAACCTGCATTTTGACAACCAGGGGTATACTGTAAAAATTTCA
TCAAGTAAATTTATGCCCAAAACCCTTTAAATCATATTTCAAAACTATGG
TCAAAGTTTTGTATTCATATCTTAAAGGTATCTAGAGAAATCGCTAAAAT
TTCAAACCTCCGTTTTGGGGGCCATTAGAAAAAAGCTACCTATCTTTAAG
CGATTGAAAAATATTGCTGAAATTGAAAATTTTGAAAAAGAAATTCCAGG
AAATAAAGTAGAAATGTTAAAGGTTTTCATGCAGCAAAAATCTTTGTAAA
ATCTCTTTTCCTCTAGAGATTTGAGAGAAATTTCAAATTTGATCGCCGTT
TTGGGGGCCACATACTGTAATGTCTGAAAATGAGTTAGAAATTTTCAAAA
AATTTTGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATGTGCCAAAAAA
AGGATGTTCCACCAGTGGGATTTTAGGGGATTTTTTCCTGAGGCATAACC
ATCCTATAGAGAAGGTCTGGAGAATGTTTCAGCTGGATCTTATTTTTTCC
CTTAAATTATGCTAGCCGACCCCACTATTAAGCTTGATCTTAATGAAACG
CTTTTGTTCGTTACTACAGAGCTTAAGCAGCCTATAAAAGATTCCAAACT
AAAGTGAAACAAATAATGCCACTTATTTTAGGAGTGCGAAAGAGGAAACA
TACTCTTCATACTGCTTCCGCCCAATTCCACACATTTATGTCAACCACTG
GACGTAGCCTTTTTCGCACAATTCTACCCATTTATCGTAACCACTGGGCG
TAGCCGTTTTCGCCCAATCCCACCCATATTTCACAACCACTGGACGTAGC
CGTTTTCCGGATGGCGCATCCNTCGTAACCACTGGACGTAGCCGTTTTCG
CCCAATCCCACCCATTTTTCACAACCACTGGACGTAGCCGTTTTCCGCAT
GGCGCATCGACCGTTTTCCGAGGATTAAAAAATCTGATTGGAAGGATGTA
TAATGACCGTATAGCGCATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048116-exon-scaffold_140-1575043694:74595..74697 | TCONS_00048116-exon-scaffold_140-1575043694:74595..74697 | Clytia hemisphaerica | exon |
| TCONS_00048116-exon-scaffold_140-1575043694:72375..72716 | TCONS_00048116-exon-scaffold_140-1575043694:72375..72716 | Clytia hemisphaerica | exon |
| TCONS_00048116-exon-scaffold_140-1510915933:74595..74697 | TCONS_00048116-exon-scaffold_140-1510915933:74595..74697 | Clytia hemisphaerica | exon |
| TCONS_00048116-exon-scaffold_140-1510915933:72375..72716 | TCONS_00048116-exon-scaffold_140-1510915933:72375..72716 | Clytia hemisphaerica | exon |
| TCONS_00048116-exon-scaffold_140-1491911889:74595..74697 | TCONS_00048116-exon-scaffold_140-1491911889:74595..74697 | Clytia hemisphaerica | exon |
| TCONS_00048116-exon-scaffold_140-1491911889:72375..72716 | TCONS_00048116-exon-scaffold_140-1491911889:72375..72716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:72375..74697 - |
Blast
The following BLAST results are available for this feature:
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