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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048103 ID=TCONS_00048103|Name=TCONS_00048103|organism=Clytia hemisphaerica|type=transcript|length=316bp
aaataaagagaaaatgaCAAGGAACAACCAGTAGCAaaatgtttcgAATA
ATTGAATATGGAAGATCTTAATGGCGGACATAAGAGGCTTCCCTATGGTT
TTCGTTCTGGACATTGTTAATCCATTTGAAATCGCTAACGTTCGATAAAT
GATGATGGAATGTCAAAAGGCAAACCTGGAGATCTTGGTTACAAATTACG
AAGGAAGTTATGGACGCTACAAATGCTATGAATGTTGAGAAAGGTGCGAC
AAGAAACAAATCGAAATCATTTTCTAGGAAATAAATTTCACCTCGAGAAC
TAAAATGTCCCCATTT Run BLAST on NCBI transcript from alignment at scaffold_140:100199..101399+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048103 ID=TCONS_00048103|Name=TCONS_00048103|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at scaffold_140:100199..101399+ (Clytia hemisphaerica)
aaataaagagaaaatgaCAAGGAACAACCAGTAGCAGTAAGTAAAATTCT
ACCAAGATCTTTGGGTTGTAAAATCTTTCCCTTCTTGCCCTTAGAGGTTC
TTTTGTACATTATCTATTTTTTGCGAGGtttacaaaatttaaaacaaaag
tcaAAACAAGTCCAGATATGGAGAAAAAATCCATAAAAGCAGGCAgaatg
tctgaaattttcaagaaataaaGGCTTTTGAGCAATCATTTCAAACATCC
GTCCTACAGCCCCAgtggatttttttctcacagCGGGGGTCGAAATCTCT
ATTTAAATCCCAATGGGGGTGTTTAAGAGCTTGATATtcacattttattt
tctatttttagaaatgtttcgAATAATTGAATATGGAAGATCTTAATGGC
GGACATAAGAGGCTTCCCTATGGTTTTCGTTCTGGACATTGTTAATCCAT
TTGAAATCGCTAACGTTCGATAAATGATGATGGAATGTCAAAAGCAAgta
cttaaaattaaattttttttcaaaaaatgtattttgaccgtttttgtCTT
TAAAATAGTATGTAGTATAGCATAATGGTTGGGTTTTGCCATTTGCTTTA
TTGAGGGTTTAGCCAAGATGGATCGGTGATGTATTGTGTAAGTTTTGGCC
TCAAATATTGACCAGCCTCCTATAAGTATAAGTTTTTGGGGTAAAATTCA
TCCTTTAAACTTTTAAGTtccaaacctaaaaatgttctttcttaacctgt
ttattttcagcatttcttttcatttccctaaaattgttttagagttaaag
agtccacaaagccttataattataaatgttcttaatatattGGCCAACGA
AGTTTTGTtcaatagtttgttcttataaaaatagtgTAATAATGGTTGAG
TTTTGCCATTTTCTTTGTATCGTCTGGCGGTCATCTTTCAAAATGACCAT
TTAAAAAACTATCTGAATTCGAAATGTATGTGAAAGGCAACGTGAAAGAT
ttttaatttcacagatttaatttttaattttggctttGCTCTCTTCATCA
TAGGGCAAACCTGGAGATCTTGGTTACAAATTACGAAGGAAGTTATGGAC
GCTACAAATGCTATGAATGTTGAGAAAGGTGCGACAAGAAACAAATCGAA
ATCATTTTCTAGGAAATAAATTTCACCTCGAGAACTAAAATGTCCCCATT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048103-exon-scaffold_140-1491911889:100199..100234 | TCONS_00048103-exon-scaffold_140-1491911889:100199..100234 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1510915933:100199..100234 | TCONS_00048103-exon-scaffold_140-1510915933:100199..100234 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1575043694:100199..100234 | TCONS_00048103-exon-scaffold_140-1575043694:100199..100234 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1491911889:100560..100691 | TCONS_00048103-exon-scaffold_140-1491911889:100560..100691 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1510915933:100560..100691 | TCONS_00048103-exon-scaffold_140-1510915933:100560..100691 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1575043694:100560..100691 | TCONS_00048103-exon-scaffold_140-1575043694:100560..100691 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1491911889:101252..101399 | TCONS_00048103-exon-scaffold_140-1491911889:101252..101399 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1510915933:101252..101399 | TCONS_00048103-exon-scaffold_140-1510915933:101252..101399 | Clytia hemisphaerica | exon |
| TCONS_00048103-exon-scaffold_140-1575043694:101252..101399 | TCONS_00048103-exon-scaffold_140-1575043694:101252..101399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:100199..101399 + |
Blast
The following BLAST results are available for this feature:
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