TCONS_00048119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048119
Unique NameTCONS_00048119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048119 ID=TCONS_00048119|Name=TCONS_00048119|organism=Clytia hemisphaerica|type=transcript|length=706bp
CTTATGCGTGTTTTCAGGGAAACGTACAAGCCAATGCCTGAAATATCATT
GATGGAGTACATTTACGATATTCGGGAATGGTTGGGTCCAATGATGAAAG
GCCTTCACAATATTGTGTATCCGCACTGTTTCAAGATCGTTAAGTCCAAC
GGTGTGGTATAAATGAAATACAAAAACTGGGCGAACGACAAAGAATGGTT
GCCACTTGACGAGacactaaaaattttaaatgtaaGTGATATAATCATCA
ACTTACAGTATCGTTATAATAAAGGTGTGGACCCTACGTGAGACATTTTG
ATTTGCGGACTGCAGACTTCTAtatgatttgaaagatttgccATAAAGAC
TGCCTCCGAGAAGAAATGTTCATTATATATCCGTGGTTTTGCGATCATGA
GACATACGGaggtaaaaataaaataactgTAGATCCCGGTATTCTCAATT
TTGTGAAACTCTATTTTTACTGTTCATATAAGAGGAAAACATCAACCTTC
AAATCACACCGAAGCTTGTGCCAGTTAACAAAGATTGCCAAGACTTTGCA
CGCCTGAAGAACGATATTGGAAAGTACTACCGANATGATACCGTGAGATG
GCTGGATTCCAAAAGCAAGCGTCATTTTTTATAGGGGTTTACACTAATCA
ACGACGTCCTGACCAAGTCACATCGGGAATATCTACGTAAGAAATACAAG
GAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_140:138488..139193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048119 ID=TCONS_00048119|Name=TCONS_00048119|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at scaffold_140:138488..139193- (Clytia hemisphaerica)
CTTATGCGTGTTTTCAGGGAAACGTACAAGCCAATGCCTGAAATATCATT
GATGGAGTACATTTACGATATTCGGGAATGGTTGGGTCCAATGATGAAAG
GCCTTCACAATATTGTGTATCCGCACTGTTTCAAGATCGTTAAGTCCAAC
GGTGTGGTATAAATGAAATACAAAAACTGGGCGAACGACAAAGAATGGTT
GCCACTTGACGAGACACTAAAAATTTTAAATGTAAGTGATATAATCATCA
ACTTACAGTATCGTTATAATAAAGGTGTGGACCCTACGTGAGACATTTTG
ATTTGCGGACTGCAGACTTCTATATGATTTGAAAGATTTGCCATAAAGAC
TGCCTCCGAGAAGAAATGTTCATTATATATCCGTGGTTTTGCGATCATGA
GACATACGGAGGTAAAAATAAAATAACTGTAGATCCCGGTATTCTCAATT
TTGTGAAACTCTATTTTTACTGTTCATATAAGAGGAAAACATCAACCTTC
AAATCACACCGAAGCTTGTGCCAGTTAACAAAGATTGCCAAGACTTTGCA
CGCCTGAAGAACGATATTGGAAAGTACTACCGANATGATACCGTGAGATG
GCTGGATTCCAAAAGCAAGCGTCATTTTTTATAGGGGTTTACACTAATCA
ACGACGTCCTGACCAAGTCACATCGGGAATATCTACGTAAGAAATACAAG
GAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030630XLOC_030630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048119-exon-scaffold_140-1575043694:138488..139193TCONS_00048119-exon-scaffold_140-1575043694:138488..139193Clytia hemisphaericaexon
TCONS_00048119-exon-scaffold_140-1510915933:138488..139193TCONS_00048119-exon-scaffold_140-1510915933:138488..139193Clytia hemisphaericaexon
TCONS_00048119-exon-scaffold_140-1491911889:138488..139193TCONS_00048119-exon-scaffold_140-1491911889:138488..139193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:138488..139193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745439	0.606175	0.353918	0.632592	0	0.248887	0.153932	0.427621	0.339731	0	0.768622	0.199951	0.364304	0.314779	1.32709	0.957274	0.416714	1.4	0.858689	0.675311	0.28267	0.859195	0.170656	0.943656	1.39048	2.02936	1.00786	1.09155	4.23228	1.58252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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