TCONS_00048120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048120
Unique NameTCONS_00048120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048120 ID=TCONS_00048120|Name=TCONS_00048120|organism=Clytia hemisphaerica|type=transcript|length=412bp
TGTTACGTTGGCATCGTTCAAGACGTCATCAGAGCTGAACGAACCATTAA
TTGGAATCTTCTCTTCGGCTCAACAAACGTCATACTTGACTTTATTTGCA
GCAACTTGGCATAATGATTCTGGGCATAATAATTATGTATACCTTGTGGC
CTTGAACTACAGTCTATTGTTGAGATGGAAGGGAATCAACTGGAAGTTTA
CAAAAGAGTTCCTCAAAGAACGATTCGATCGAACGCACACGcagtaaata
aaaggaaagtAACATACACGTAATGCTTTttcaaaacagaaagaaagaga
GATGTGGTGTCGGAGAAAGCAAGCAAACGTTCAAGTCAAGATATCAAAGC
TGCAGTAAGAAGTCTGGTTGTGTGAGGTAtcccttttgtttttatattta
ctttttctaaag
Run BLAST on NCBI

transcript from alignment at scaffold_140:150192..158396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048120 ID=TCONS_00048120|Name=TCONS_00048120|organism=Clytia hemisphaerica|type=transcript|length=8205bp|location=Sequence derived from alignment at scaffold_140:150192..158396- (Clytia hemisphaerica)
TGTTACGTTGGCATCGTTCAAGACGTCATCAGAGCTGAACGAACCATTAA
TTGGAATCTTCTCTTCGGCTCAACAAACGTCATACTTGACTTTATTTGCA
GCAACTTGGCATAATGATTCTGGGCATAATAATTATGTATACCTTGTGGC
CTTGAACTACAGTCTATTGTTGAGATGGAAGGGAATCAACTGGAAGTTTA
CAAAAGAGTTCCTCAAAGGTAAGTATACTTCTATGAGATCAACTCGAGAA
TTATCTGGACAGATTTTTTAATCACGAATAAATCCTTATGAAATCAATGA
AAAGCAGATCAAGATCAGTGGCCGAGGGCATCACAGAGAATATCTAGAGC
GTCTTGCCAAAGACCATCCACCTATGCTCGAAATATCAGAAATATCGATA
CATTTCTTTCAACAAAACCATCAGCTGAGGCAACAACGCACAAGGTTTTC
TGGTAGGAATAACGGAATTACGGAGCTTTTAACAAAATCAAAGTATAATC
AACCCATTGTTAATGCAACTCAGCTGAACATAGATGAATAACCGACTTTT
TCAATAAAGAGTGACTTATCCTTCTGCATAGGCCGCAGTCGCAAAGTATA
AAGGGTAATCAGGACCACTGCGCGCTAATGACGACCTACTATATGTCAAA
AGTTTCGAAAGTTTTTGTGTCTAGCCAACCGGAAGTCATTACTAGAGCGC
AACCAGTCCCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGGTTAAGGGT
ATGTTTTCAAAGAATCAGAAATGCACTGTAAGGGTGGACTTTTGATAAAT
GCACTGTATGGGTGGAAATTTCAGCAAATCTAGGAATAATTGCAAATTTT
TGCTTGAAAATCTTGATTTTTTTGCTCTAAAAGAGTTTAAAATTTGAAAA
ATGCACTGTAAGGGTATAAATTTCACCGATTTTTTTCTGCACTGTAAGGG
TGCGATTCTAAAAGCCATTTTTTTCGCTGCACATACCGTAAGTTGGTAAA
CCCAACCCCCCCCTCGGGAACCAGTCCTTATAAGGTGTTAACCGGACTGG
CGACCTTATAGCGTTTTAAAGTAGTATCTATATAAATCTATTACACATTT
TAACAGGTATTTGATTATCTAATTTGAGGCATTTTATAAAATGAGGTAAA
AAGTTAAAAATTTCGGAGTTGTTAAGCTATTTTGGCCTGAATCCATACTC
TCGGGTACCTAATAGCCGGGGGTGCCCGCTAATCGACAGGACATTCTTAT
TGCACCCCCCTTGCCATCATTTAAAAAGGATGTACATTGAATATAACCTA
GTAGACTTTTTTCATGATAAAAGAACCATTTTTCACTCTTGAAACGATTT
ATCACTTTTTTAATAACTTTGAGTAAAATAAAGCACCGTGGTAACGAAGA
AAAGTGAGGGGGTACCGTTCTATTATATATTTGGTGAAACATGCAACAAT
GGAAGGTATTTATTTTACCTTTTGGCGCCAAACGTATCAGTTACTCTCAC
TGATAGGCTTAGCGCCCATCATGGGCCCTATAATGTCAACCTGATCCAAG
AAAAGTTACATCAAACTACTGCCTAATTTGTATAGCTACCTCTTTAGCTC
CTTAGATATTGTTATTAAGCTGTTAAGATGAGCTATAGGAAGCTTAATAC
CTATTTGGAAATCAAGATGTTTTTATATCTTGAGAAAATATATGAAAGAT
AAAGCATCGTTAACTCGACCAACGTTTCGGGGGCCTTTGAATTAGCATTG
ATAAACTGGGTGGACATCCATGTATCAGTGACACGGTCAGATCCTCCCCG
ATGGATAATCAGATAAAAAAATAGTTCAATTCTAAGCTCTAGTTGGATAA
TGGGTAAACCCGGGGTAAATCCGGTCAAAATTACCCCGATTAAAACTAGG
AAACTTCTGGTCTTACCTCGGTCAATTATCACATTGATTAGGTTAACAGT
TAACACAGTCAAAATTTCACCGTATCACTAAGACAGGACCGAGGGATGTG
AGTAGAGCAGCGTCCGAAATTCAGAAAATGCTTTAAAACAGGTTTTCGTA
GGTTTTCCTGTACGGAGATCTCTGCGATGATGTACTTTAACCGGATTAAA
TTTCGCGAGATTAAATTTCGCGAGCTAAAAAAATCGCGAAATTTTCTGGA
TTTAATTTCGCGAGTCAGAGTTGTGAAAAATTTCGCGTGGATTTAATTTC
GCGAATAAGCCAGAAAACAGCTGAAAATTAGCCATTTTCTGCCATAAATG
GAGACCTGGAACTAGTTTCTCCGCCGAAAATACGATTTTAAAAGTTTTGT
GTTGGATTTAATTTCGCGAATCAGGAATCTCACGCGTTTTCGCGAGTTTT
AATTTCGCGAAAATGGCAAAAATTCGCGAAATCGCGAAATTTAATCTCGC
GAAATTTAATCCGGTTAAAGTATTATTTATAAACAACAACACTTCTCTCT
TCGTCTCCTCTCTCCCACAACATTTCATCGGAACGGTCGGTTTGAAGAAT
CTCCAATGAGAAAAGACGATGATGGAAGACCAGAATTTCTTCCTTGGAAT
ACCGGTCTGTAAACTTCTCAAATACTGTTACCGGCAAAACCAGTTTAAAT
ACCGAACCAATGAAGTATAAGCCCGAAGCGGGCTAGAAGCGAATCTCCTT
GGTAGGATTTTAAGCCAATAAATCGTACTAAAGTTGCGCGGCCCGCCTAG
TGTTTGCACAAATGTCAGATTGAAACTAAAATTTACCGCTGAATTTCGAA
AAAATACCACTCGAAAACAAAGCAATCGCTAGATTCAACCTGTCTTCAAA
AGTACGGCGCATATTTTAATGCTTCACTTTTTCCAGCCTGAGAAAGTTAA
AGATTCACTTCTAGTCTTTTGGGCTTATACTTCATTGTACCGAACTATTG
TAATTTTCTCGTGTTTTCAGAAATAGTAGTAAATTTTTGTGTGAACACTG
ATACCGGCAGACATCTCAAATACTGAAATTCCGGTAATTTTTCTTTCCAA
TACAGGCATACCGGAAAAAAACTTCCATCTCGGATTATAGGTCAATACCG
GCCTCTTGGAATAGTTCATTTTTAGGAAGGCCTGTATATTTTGAGTCATA
AACCTACATTTTAACGATAAAGAGATACTGAAAACATTTCATCTACCAAA
TTTGTTGTTACAATATTTCAAATGACTATTCCAGACTGATCAAAATTTCA
TACTATTTCTCAAATATATCTTAAAATTATAAAGGTTCCTACAGTATGTG
GCCCCCAAAACGGCGATCAAATTTGAAATTTCTCTCAAATCTAGAGGAAA
AGAGATTTTACAAAAATTTTTGCTGCATGAAAACCTTTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTTAAAGATATT
TTTCTCCTACATTTTGCAAAAAAATGACAGAATTTGCAGTTTTTGCTGAT
TCAGCGAAATTTTTTATATACAATTTTAATTTTTTGTTATAAACTATTAA
CTCAAGGTGATAGGAATAGAATTCCAAGATTTTTTGCTTTTTCTCATACT
GTATTTAGAATTTTCGGTTTTCTCATAATAGTAGAGGGCATTTTGTAAAA
TCGCTCGACCGTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTA
AGGGGTAGGGGAATCGAAATTACTATGTTTCCAATTTTTTTTCGGACACT
TTGATGTGATTTTCGGACAAATATGACGGTATCAGGCAAAAATCATAGGG
TTAAAAATTAATGAAAATTTTAGCTCGAGAAAACGGAGACTTGTTGTATA
TTTTTGGAAAGCTCTCAAAAAATTAGGATTAAAATATATTGCAAGTATAG
GTAGGGACCGCGAAAGACGGGGGTAAAATGGTTGGAATCGACCAAAATGT
TGTTTTTAGGTTTTAGACCACCTATAACCATGGGATAAGTTTTAGAAGCA
TTCTTATCATTAAATAAATGTCCTGTAAATATTTGGTGGCCATAACTTTA
TTTTTTATGAAAATATGAGCAATTTTGTAAAATTATGAATGGCAGACGAC
CTACCAACAGAAAATTGGATTTAGACAGGTGAGCGCGTCCTCAAACCCCC
ATGATGTTATACATTTTTGGAACTGGAAGAGATCAGCGCTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAAGGGTCATTTTCAGGAGA
TAGAAAATTTCATATCTCGAGAACGGCTTGGCCGATTTTGATGAATGACC
CCTCATTTTTTTTCTTTTTTGATGCTCTTCCCAATGAGATTGGTTTCAAT
GCGCTAAAAACAATTTGAAAAAATCATTGCGGTCCCTAGTATAGGTGATT
TCTGTACCTAACTCGAGTTTTTGCCTGAGACCGTCATATTTGTCCGAAAA
TCACACCAAAGTGTCCAAAAAACAATTGGAAACATAGTAATCTCAATTCC
CCTACCCCCTAGCTTTCCAAAAATGTATAACAAGTGCTTTTAACAAAACA
GTCAAGCGATTTTAAAAAATCGAACAAAATTCCCCCTACTATAATGCTGA
TTCTAGGGCTCCAAAATACTGGTTGACCTTCAAGATGCTATATCTTTTAC
CCATCAGCCTCTAAAGTCACAGATATATTTGCATTTTCTGAACGGCATTA
GGTGTAGAAAGTTTCCTATACCCCATTTTCATAACTTATTTTCAATATCC
AAGGAGCTAGAGTGAGTTATATGCAATTTATATCTAATTTTGGTCTTTAG
ACGCAAATATGTTATTTTGAATCTGTCTAACCAGCAAAAACATGCTCATT
TTAAAGTATAACCATCATTCTTTCAAAATAAACAAAAATCGTTTACCTTA
AAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCGGATGGCGAA
AAAAGAAATTTTGGCGGGAACTTAATTTGGCGGATTTCAGTCAATTCCGC
CAAATCCGCCAAATTTTCTTTCCGCCAAAATTTCTTCCTTTAAGGTAATT
CTGATAAATCTATAAGTCAGAATCTTCATTTTAATGAAAACCTCCGTTTT
GGGCCCGTCTCCGTTTTGGGGGCCATATACTGTAGCCTGTATATCTGAGT
CCATGAAAAGGTGACCAAACCTAGCAAGGGATTAGGTTAGTCGAAATTTT
AGATTTAGCCGATATGTTTGGCAGTATACTGTTAAATGGGGACATTTTAG
TTCTCAAGGTGAAAATTATTTCCTAGAAAATGATTTCGATTCGTTTCTTG
TTGCACCTTTCTCAACATTCATAGCATTTGTAGCGTCCATAACTTCCTTC
GTAATTTGTAACCAAGATCTCCAGGTTTGCCCTATGATGAAGAGGGCAAA
GCCAAAATTAAAAATAAAATCTGTGAAATTAAAAATCTTTTACATAGCCT
CTCAGATACATTTCGAATTCAGATAGTTTTTTTAATGGTCATCTTTCAAA
ATGACCGCCAGACGATACAAAGAAAATGGCAGAAAATTACCATTATTACA
CGTTTTTTTATAAGAACAAACTATTGAACAAAACTTCGTTGGCCAAAATA
TTAAGAACATTTATATTTAAATAAGGCTTTGTAGACTCTTTAACTCTAAA
ACAATTTTAGGGAAATGAAAAGAAATGCTGAAAATAAACAGGTTAAGAAA
GAACATTTTTAGGTTTGGAACTTAGAAGTTTAAAGGATAAATTTTACCCC
AAAACTTATACTTATAGAAGGCTGGCCAATATTTGAGGCCAAAGCTTACA
CAATACATCACCGATCCATCTTGGCTAAACCCTCAATAAAGCAAATGGCA
AAACCCAACCATTATGCTATACTACATACTATTTTACAGACAAAAACGGT
CAAAATACACTTTTGAAGAAAATTTTAATTTTAAGTACTTGCTTTTGACA
TTCCATCATCATTTATCGAACGTTAGCGATTTCAAATGGATTAACAATGT
CCAGAACGAAAACCATAGGGAAGCCTCTTATGTTCGCCATTAAGATCTCC
CATATTCGATTATTCGAAACATTTCTAAAAATAGAAAATAAAATGTGAAT
ATCAAGCTCTTAAACACCCCCATTGGGATTTAGATAGAGATTTCGACCCC
TGCTGTGAGAAAAAAATCCACTGGGGCTGTAAGACAAGGATGTTTGAAAT
GATTGCTCAAAAGTCTTTATTTCTTGAAAATTTCAGACATTCTGCCTGCT
TTTATGGATTTTTTCTCCATATCTTGACTTGTTTTGACTTTTGTTTTAAA
TTTGGTAAACCTCGCAAAAAATAGATAATGTACAAAAGAACCTCTAAGGG
CAAGAAGGGAAAGATTTTACAACCCAAAGATCTTGGTAGAATTTCACTTA
CTGGTTGTTCCTTGTCATTTTCTCTTTATTTAATTGCGATTCAACAGTCT
ACACGGTGTAATTCCTCTACATTCAAACATCCTACAGTCTGACCGTATAC
TTTGATTCCCATTAATTCCTCAAGTGAACAAAAAAACTAAGCTTAGAAAT
TCGCAATGTTTTTCTTTGATTTCCGAAGCGTGCACTGCTTTTTTACCTTA
TTTGGCAATGTTTTGATTGATGTCTCGACGTTTTATTTTAATAGCCAATC
AATGGCGCGCATTTCGACCAATCACAATAGAGTAATAAAAATATCAAATT
CTGCGCGTGCAATTATAATTTTTTTTATTTCATTCAGAACGATTCGATCG
AACGCACACGCAGTAAATAAAAGGAAAGTAACATACACGAAATGTTTTTT
CAAAACAGAAAGAAAGAGAGATGCNACGCACACGCAGTAAGTAAAAGGAC
AGTAACATACACGTAATGCTTTTTCAAAACAGAAAGAAAGAGAGATGTGG
TGTCGGAGAAAGCAAGCAAACGTTCAAGTCAAGATATCAAAGCTGCAGTA
AGAAGTCTGGTTGTGTGAGGTATCCCTTTTGTTTTTATATTTACTTTTTC
TAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030631XLOC_030631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048120-exon-scaffold_140-1575043694:158179..158396TCONS_00048120-exon-scaffold_140-1575043694:158179..158396Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1575043694:150415..150459TCONS_00048120-exon-scaffold_140-1575043694:150415..150459Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1575043694:150192..150340TCONS_00048120-exon-scaffold_140-1575043694:150192..150340Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1510915933:158179..158396TCONS_00048120-exon-scaffold_140-1510915933:158179..158396Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1510915933:150415..150459TCONS_00048120-exon-scaffold_140-1510915933:150415..150459Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1510915933:150192..150340TCONS_00048120-exon-scaffold_140-1510915933:150192..150340Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1491911889:158179..158396TCONS_00048120-exon-scaffold_140-1491911889:158179..158396Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1491911889:150415..150459TCONS_00048120-exon-scaffold_140-1491911889:150415..150459Clytia hemisphaericaexon
TCONS_00048120-exon-scaffold_140-1491911889:150192..150340TCONS_00048120-exon-scaffold_140-1491911889:150192..150340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:150192..158396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242291	0.476842	0	0.193595	0.942733	0.37248	0.674072	1.26212	0.294546	0.364843	0	0.698364	0.581161	0.844958	0.0992386	0.638989	0.655985	0.806837	0.371563	0	0.675899	0	0.283839	0	2.8146	1.50718	0.958562	0.767253	0.581934	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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