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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048107 ID=TCONS_00048107|Name=TCONS_00048107|organism=Clytia hemisphaerica|type=transcript|length=415bp
CAattaaataaagagaaaatgaCAAGGAACAACCAaaatgtttcgAATAA
TCGAATATGGGAGATCTTAATGGCGAACATAAGAGGCTTCCCTATGGTTT
TCGTTCTGGACATTGTTAATCCATTTGAAATCGCTAACGTTCGATAAATG
ATGATGGAATGTCAAAAGCAAGGCAAACCTGGAGATCTTGGTTACAAATT
ACGAAGGAAGTTATGGACGCTACAAATGCTATGAATGTTGAGAAAGGTGC
AACAAGAAACGAATCGAAATCATTTTCTAGGAAATAATTTTCACCTTGAG
AACTAAAATGTCCCCATTTAACAGTATACTGCCAAACATATCggctaaat
ctaaaatttcgACTAACCTAATCCCTTGCTAGGTTTGGTCACCTTTTCAT
GGACTCAGATATACA Run BLAST on NCBI transcript from alignment at scaffold_140:150761..152059+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048107 ID=TCONS_00048107|Name=TCONS_00048107|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at scaffold_140:150761..152059+ (Clytia hemisphaerica)
CAattaaataaagagaaaatgaCAAGGAACAACCAGTAAGTGAAATTCTA
CCAAGATCTTTGGGTTGTAAAATCTTTCCCTTCTTGCCCTTAGAGGTTCT
TTTGTACATTATCTATTTTTTGCGAGGTTTaccaaatttaaaacaaaagt
caAAACAAGTCAAGATATGGAGAAAAAATCCATAAAAGCAGGCAgaatgt
ctgaaattttcaagaaataaaGACTTTTGAGCAATCATTTCAAACATCCT
TGTCTTACAGCCCCAgtggatttttttctcacagCAGGGGTCGAAATCTC
TATCTAAATCCCAATGGGGGTGTTTAAGAGCTTGATATtcacattttatt
ttctatttttagaaatgtttcgAATAATCGAATATGGGAGATCTTAATGG
CGAACATAAGAGGCTTCCCTATGGTTTTCGTTCTGGACATTGTTAATCCA
TTTGAAATCGCTAACGTTCGATAAATGATGATGGAATGTCAAAAGCAAgt
acttaaaattaaaattttcttcaaaagtgtattttgaccgtttttgtCTG
TAAAATAGTATGTAGTATAGCATAATGGTTGGGTTTTGCCATTTGCTTTA
TTGAGGGTTTAGCCAAGATGGATCGGTGATGTATTGTGTAAGCTTTGGCC
TCAAATATTGGCCAGCCTTCTATAAGTATAAGTTTTGGGGTAAAATTTAT
CCTTTAAACTTCTAAGTtccaaacctaaaaatgttctttcttaacctgtt
tattttcagcatttcttttcatttccctaaaattgttttagagttaaaga
gtctacaaagccttatTTAAatataaatgttcttaatattttggccaacg
aAGTTTTGTtcaatagtttgttcttataaaaaaacgtgtaataatgGTAA
TTTTCTGCCATTTTCTTTGTATCGTCTGGCGGTCATTTTGAAAGATGACC
ATTAAAAAAACTATCTGAATTCGAAATGTATCTGAGAGGCTatgtaaaag
atttttaatttcacagattttatttttaattttggctttGCCCTCTTCAT
CATAGGGCAAACCTGGAGATCTTGGTTACAAATTACGAAGGAAGTTATGG
ACGCTACAAATGCTATGAATGTTGAGAAAGGTGCAACAAGAAACGAATCG
AAATCATTTTCTAGGAAATAATTTTCACCTTGAGAACTAAAATGTCCCCA
TTTAACAGTATACTGCCAAACATATCggctaaatctaaaatttcgACTAA
CCTAATCCCTTGCTAGGTTTGGTCACCTTTTCATGGACTCAGATATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048107-exon-scaffold_140-1491911889:150761..150795 | TCONS_00048107-exon-scaffold_140-1491911889:150761..150795 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1510915933:150761..150795 | TCONS_00048107-exon-scaffold_140-1510915933:150761..150795 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1575043694:150761..150795 | TCONS_00048107-exon-scaffold_140-1575043694:150761..150795 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1491911889:151123..151258 | TCONS_00048107-exon-scaffold_140-1491911889:151123..151258 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1510915933:151123..151258 | TCONS_00048107-exon-scaffold_140-1510915933:151123..151258 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1575043694:151123..151258 | TCONS_00048107-exon-scaffold_140-1575043694:151123..151258 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1491911889:151816..152059 | TCONS_00048107-exon-scaffold_140-1491911889:151816..152059 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1510915933:151816..152059 | TCONS_00048107-exon-scaffold_140-1510915933:151816..152059 | Clytia hemisphaerica | exon |
| TCONS_00048107-exon-scaffold_140-1575043694:151816..152059 | TCONS_00048107-exon-scaffold_140-1575043694:151816..152059 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:150761..152059 + |
Blast
The following BLAST results are available for this feature:
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