TCONS_00048121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048121
Unique NameTCONS_00048121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048121 ID=TCONS_00048121|Name=TCONS_00048121|organism=Clytia hemisphaerica|type=transcript|length=559bp
TCAGAGCTGAACGAACCATTAATTGGAATCTTCTCTTCGGCTCAACAAAC
GTCATACTTGACTTTATTTGCAGCAACTTGGCATAATGATTCTGGGCATA
ATAATTATGTATACCTTGTGGCCTTGAACTACAGTCTATTGTTGAGATGG
AAGGGAATCAACTGGAAGTTTACAAAAGAGTTCCTCAAAGGTAAGTATAC
TTCTATGAGATCAACTCGAGAATTATCTGGACAGATTTTTTAATCACGAA
TAAATCCTTATGAAATCAATGAAAAGCAGATCAAGATCAGTGGCCGAGGG
CATCACAGAGAATATCTAGAGCGTCTTGCCAAAGACCATCCACCTATGCT
CGAAATATCAGAAATATCGATACATTTCTTTCAACAAAACCATCAGCTGA
GGCAACAACGCACAAGGTTTTCTGGTAGGAATAACGGAATTACGGAGCTT
TTAACAAAATCAAAGTATAATCAACCCATTGTTAATGCAACTCAGCTGAA
CATAGATGAATAACCGACTTTTTCAATAAAGAGTGACTTATCCTTCTGCA
TAGGCCGCA
Run BLAST on NCBI

transcript from alignment at scaffold_140:157810..158368-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048121 ID=TCONS_00048121|Name=TCONS_00048121|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_140:157810..158368- (Clytia hemisphaerica)
TCAGAGCTGAACGAACCATTAATTGGAATCTTCTCTTCGGCTCAACAAAC
GTCATACTTGACTTTATTTGCAGCAACTTGGCATAATGATTCTGGGCATA
ATAATTATGTATACCTTGTGGCCTTGAACTACAGTCTATTGTTGAGATGG
AAGGGAATCAACTGGAAGTTTACAAAAGAGTTCCTCAAAGGTAAGTATAC
TTCTATGAGATCAACTCGAGAATTATCTGGACAGATTTTTTAATCACGAA
TAAATCCTTATGAAATCAATGAAAAGCAGATCAAGATCAGTGGCCGAGGG
CATCACAGAGAATATCTAGAGCGTCTTGCCAAAGACCATCCACCTATGCT
CGAAATATCAGAAATATCGATACATTTCTTTCAACAAAACCATCAGCTGA
GGCAACAACGCACAAGGTTTTCTGGTAGGAATAACGGAATTACGGAGCTT
TTAACAAAATCAAAGTATAATCAACCCATTGTTAATGCAACTCAGCTGAA
CATAGATGAATAACCGACTTTTTCAATAAAGAGTGACTTATCCTTCTGCA
TAGGCCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030631XLOC_030631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048121-exon-scaffold_140-1575043694:157810..158368TCONS_00048121-exon-scaffold_140-1575043694:157810..158368Clytia hemisphaericaexon
TCONS_00048121-exon-scaffold_140-1510915933:157810..158368TCONS_00048121-exon-scaffold_140-1510915933:157810..158368Clytia hemisphaericaexon
TCONS_00048121-exon-scaffold_140-1491911889:157810..158368TCONS_00048121-exon-scaffold_140-1491911889:157810..158368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:157810..158368 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63903	1.91349	0.731734	0.275888	0.136696	0	0.40791	0.12639	0	0	0.82157	0	0.134829	0	0	0.061769	0	0.0855166	0	0	0	0	1.07922	0.845309	0.15488	0	0.34501	0	0	0.390677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top