TCONS_00048124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048124
Unique NameTCONS_00048124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048124 ID=TCONS_00048124|Name=TCONS_00048124|organism=Clytia hemisphaerica|type=transcript|length=491bp
TGAAAATATCCAGGGTCAAAAGTTGTCTTCGACGAAATTTACTGTATCAA
AGCGATGATATCCCAATTAAAACAAACGGATCAGTTTGACTTGAACACCG
TTACAAAACAGCTTGAAAGAATTATGatgagaaaattcttttttgtccAG
TTTCGCCCTCAAAATTCAGGAAATGTTTGCTGCAGAATCGGAAGAAGTGA
AAGAAAATACTGTCTAAGGAGGTTCAACTGGCGAAAGATAATGTTTCCAT
TCATCCAACTCTTCTTGAAACTGTCTAGTCACGTCCTATCATCCATCAGC
CACGATTGAAAACGAGAAAAATCAACATTGAACTGCTGTACAGTATATTC
ACGCAACTCTACTATAACAATTTGAGGCCTATTAGAGTCAAAAACTACCT
CAATGAAATGCGCATGATGACGATGGCTTGAACATAAACAAATCTTCCAA
TTCTTTAATTGATCACTCCTTCCTATCCACTTCCTATCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_140:167692..171211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048124 ID=TCONS_00048124|Name=TCONS_00048124|organism=Clytia hemisphaerica|type=transcript|length=3520bp|location=Sequence derived from alignment at scaffold_140:167692..171211- (Clytia hemisphaerica)
TGAAAATATCCAGGTAAGACAAGGCTAGCTANTTGATAAAATGATTTTCT
TGAAGTTTATCAGCTACTTTGTTCTCTATTTAATCACTTTGGCTATTATA
AATAAACAACATCTGTACCTCCCACCACACACTTTTCATCTTCACACCAG
GTTTCCATTATCATTACTAAGCAATTTTTCTGATTCATTCAAGTGTTTCA
AGGTATAAGTATGCATTTGCATTTTTTTTAGATTCCGATTCCAGTCTCCA
TAAACCAGTATTTACATCAATATCAACGTAACGAGAGGGAGTTTCCTTTC
TATCTGAACATTACGGCGTAGACATAAAGGATTCATAATTATTGACTGAT
GGCATAGCCCTTGGTAATGAAAATATCCAGGTAAGACAAGCCTAGCTCTA
TACCATATCTCATCCTTAATTCAATCTCTTGTCAGTCCTGTGTTTTTTAG
CATTCTTTTAATTACATTTTAAATCAATAAAAAAATTTAAATATATTTAA
TAATTTAATAATTTATATCTTTTGCATTTTCTTTTTATAAATCTTAGTTT
AGACGGAAAAACAATTTTGTAAAATTGACGACGAATAAATGTTAAATAAA
TAACAAAAATAAAATAAAAAACAACAAATCTCACTGGCAAATACTTATAT
CTTTGCTAACTTTGTATCCTTACTATGTCTCTTTTAAAGTATAATACACT
TTTTTTTATAAGAACAATTTTATAAGAACAATGAGGCTAAAAAATGCCAA
AAAATAAGAACTATTTAAGAACAGTGGAGAGGCTGAAAGTATTTTAAAAG
TAGTTTTTTTGTTTAGTTATAGCAAAAAGAATCACTGGTTTCTAAAATCC
TCTAAATAGTAAAGCAAATAGCCAAAACTTGTTTTTTACCTTAGAAAAAA
TAAGAACAAAATAAGAACAATTCAAGGTTCAAAGTGCCAAAAAAATAAGA
ACAGCCGAGCCTCAGCAAAAATTTACTGGTTCTTATTAAAGAAAGTGTAG
CTTCTCTCTATTTTTCAGAAGATTACTAAACAGGTCTAGTGTTTTTGTAT
CAGTGTACAAAATTATTGAACCATCAGTGGTAGTTTGTATTGACCCTAAA
GAATATTTTGTTTCTGGTCCAGCTTGAAAATTGTCGTAACCCGGCCGAAT
TTTTTCTCTTTGAACTTTCCATTCTTTTCCAAATTTTCCATTTCAACATT
TTCTACGCAAACAAGTGATCCAAACAATCTTTCCATATTTTCCATTCTGT
ATGATTTTGTTAATGCTTTTGATTTTACTTCTCAGGGTCAAAAGTTGTCT
TCGACGAAATTTACTGTATCAAAGCGATGATATCCCAATTAAAACAAACG
GATCAGTTTGACTTGAACACCGTTACAAAACAGCTTGAAAGAATTATGGT
ACAAGCCTCCCTTATATTTCATAATAACAGAAACAATGTCTAAATGTATG
TTTGATCTCTCATAATTTCAACAATATCATCATATTCATCTAAATTGAAC
TACATAGGGTCACCCAAGTTGACAAACAACGTCGTTTTTCTTGGCTGCTA
AACTTTTCTGAACAATTTAAGGAAAAAATTTTTATATGTTGGGTAGTGGC
GNCGTCATATTCATCTAAATTGAACTACACAGGGTCTTTTAAGTTGACAC
ACAACGTCGTTTTATTTGGTTGCGAAACTTTTTGAAACAATTTAAGGAAA
AAAATTATATATGTTGGGTAGTGGCGTTTTTTTAGAAGATTTTATTCTCA
CTTATTGAAAATTGTCAAACAATGAAATTAATTTATTCTGATTTTATTTT
TTTAGATGAGAAAATTCTTTTTTGTCCAGTTTCGCCCTCAAAATTCAGGA
AATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGGT
AAGGAATTAATTTTACAAAATTAAAAGGAAAAAGGAAACAAATTAATTAC
AATATTTTGTTCATACACGTCTTTTTTTTTTTAAGAAACTAGTTTTACCA
AGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTCTTGAGCCTTAAATGTT
TCTTACATGTTTCTAAACTTTTTGACATAATTAGCCTTGATTGGAAGGTT
CTTATAAAAAAAACGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCA
GCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTT
TCTTAAAAGTGTGTTTCTTAAAAAAAAAAAAGACGTGTACTTCTCTCATG
AAATCAATCTAGAAGAATTCTGCATAAAAGGAGACCGGGTTAAGATTCAT
CATATTTGAATGCTTTCAAAGGTCTGAAACGTTTAAATTGACTCTGTAAT
CTTTCGTCTTCGGACCATTGGACACAATTCTCTGTAAGGTCGATAGGTGT
ATGAGCAATTTCATGATCGTAATGAATCTTGCTCATACTTCGTATTGATT
TAACAATTTGAAAGTCTTCAAAAGTGAATTTACTATTACAGAGCAACTAG
TTTCCATTCCCCCTAATTTATTGATTCATTCAATTCTGTTTTGATAATCA
ATTTCGCTCTTACCCATATAGAGGTTCAACTGGCGAAAGATAATGTTTCC
ATTCATCCAACTCTTCTTGAAACTGTCTAGTCACGTCCTATCATCCATCA
GCCACGATTGAAAACGAGAAAAATCAACATTGAACTGGTACCGTTACGTT
TCCATGGATGTCTTATTGATGCATGATGTCTCTAGGTCTTTACTCTGAGT
GTCCTGTTTGACATGACTTATAATGATTTAAATGAATAATCCATCAGATA
CATCACCCCGGCTTCGATATTACGGGCTGAACTGATCTGTTTAAAATCAT
ATCATCAAATGAACTAAAAGCTGCTCCTAAAAAGATTGGCAGCCTGCACA
TTTCGATAAAAAGGTGATATCTCTTTGCAATGACGATTTTGAATGAATGG
ATTTAAAAGTTTGGAAAAAGAAGATGAAAGAATATAAAGATACTTTTACT
GGAAAGGAAAAATTATATTCTTCTGAAACTTTAGATTTCTCTGAATTCAA
ACTGTGTTTAGATTTTTTACCTTTTTTTGGAACAAAAATTAGAACCCTTC
AAGTTGGACCCCATTAGTGTAATGTCATAGCTGGAAAATAGCTTAATAAT
CANTTTCTCTGAATTCAAACTGTGTTTAGATTTTTTACCAATTTTTGTTC
CAAACAAAAATTAGAACCCTTCAAATTGGACCCCATTAGTGTATTGTCAT
AGCTGGAAAATAGCTTAATAATCGATTTGAATTGTCGTCTCAAAAGACGC
CTGGATGGAACGATCAAATTCGAAAGTTATCGTTTTGTCAGTAATATCTC
TTCTCTTATTTCAGCTGTACAGTATATTCACGCAACTCTACTATAACAAT
TTGAGGCCTATTAGAGTCAAAAACTACCTCAATGAAATGCGCATGATGAC
GATGGCTTGAACATAAACAAATCTTCCAATTCTTTAATTGATCACTCCTT
CCTATCCACTTCCTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030632XLOC_030632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048124-exon-scaffold_140-1575043694:171199..171211TCONS_00048124-exon-scaffold_140-1575043694:171199..171211Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1575043694:169814..169926TCONS_00048124-exon-scaffold_140-1575043694:169814..169926Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1575043694:169314..169406TCONS_00048124-exon-scaffold_140-1575043694:169314..169406Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1575043694:168525..168640TCONS_00048124-exon-scaffold_140-1575043694:168525..168640Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1575043694:167692..167847TCONS_00048124-exon-scaffold_140-1575043694:167692..167847Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1510915933:171199..171211TCONS_00048124-exon-scaffold_140-1510915933:171199..171211Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1510915933:169814..169926TCONS_00048124-exon-scaffold_140-1510915933:169814..169926Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1510915933:169314..169406TCONS_00048124-exon-scaffold_140-1510915933:169314..169406Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1510915933:168525..168640TCONS_00048124-exon-scaffold_140-1510915933:168525..168640Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1510915933:167692..167847TCONS_00048124-exon-scaffold_140-1510915933:167692..167847Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1491911889:171199..171211TCONS_00048124-exon-scaffold_140-1491911889:171199..171211Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1491911889:169814..169926TCONS_00048124-exon-scaffold_140-1491911889:169814..169926Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1491911889:169314..169406TCONS_00048124-exon-scaffold_140-1491911889:169314..169406Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1491911889:168525..168640TCONS_00048124-exon-scaffold_140-1491911889:168525..168640Clytia hemisphaericaexon
TCONS_00048124-exon-scaffold_140-1491911889:167692..167847TCONS_00048124-exon-scaffold_140-1491911889:167692..167847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:167692..171211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000148087	0	0	0	0.792356	1.13222	0	0	0	0.602648	0	0.250974	0	0.13062	0.181238	0	0	0	0.139945	0.14378	0.177992	0.407432	0.502798	0.737455	0.319785	0	0.326944	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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