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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048125 ID=TCONS_00048125|Name=TCONS_00048125|organism=Clytia hemisphaerica|type=transcript|length=1099bp
ATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATATACTga
aatctgTTCATCAAACCACGGCGATATTCAAATACTCTGGAAgcatttta
aacgttttttcttGTTAGACTTCCAAGCGAAACGTATGGTACAACCTGTG
GAATCTCTTCTGTGGTCTTTTGGGAAAATGGTGCGGATTAGCATTGCATA
GCAGAAAGAATGTAGAGCTCAGTTAACCATAGTTGATTTTGATGCAGATG
ATCGTCACTGAAGATTGATGCAGGATACATCAACGACGCCACAATGCTTG
TGCTTATTTTATACTTGTAAGGAAATAAATAAAGTCtccgtcataaattt
tgaatcCCCCTCAGATCCGCCACTATGTATTGCGCTTACTTCTATAGCTT
TTTTAGACCACTTGCAAagaatttttcatttgaaaaaccTCCTTAAAGCA
GAAAGTGCACGTTCAAGACGAGCTTTTTCTTATTAAAAGTACATAACTCG
AAGCTTCCCTGTCTCAAAGCCccattcagttttcaattggAATAATTTTA
TGGATTAATATCTCAAAGTGGTTGAAATTTAGGGATTTTtaaaagcggac
aaattttaagtcaaattttTAGGTTTGTGACACAGGTGTGTATTGCCGTG
GTCATAGTAAGCCATGGTTGATATTTTTAAAGCAGATTGTATCTATCAAA
AGCGTCTGTTGGGTGTTTGTTTTATAAATTCTTCTCCCAATAAGTTTTGA
TTAGAAATGGCATCTAAAGTTTTAAAACTTGAAGAAATGAAATTCTAGTT
TTTGGCCTGTTTTATTCAATTCGAACTGTTTTACAAGAATAATTTTGATG
CACAAAACATCTTTTGGGATACTTTTATTCACCAGGTGTTAATTTATATA
TCATCATTACAAGCTCAATATTGACAAAGCTAAGACTTTAGACCAGCGGC
CAAGGTAGTGCtctgtgtcacttcgtagggcaccccttagatcaaggcaa
atttttgatattatgcccCTAATAGGAAGTcaaatctcctgcagttttca
agtgaatcgatttttatttcaagggtccttctttactaacggttttttc Run BLAST on NCBI transcript from alignment at scaffold_140:184345..187067- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048125 ID=TCONS_00048125|Name=TCONS_00048125|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_140:184345..187067- (Clytia hemisphaerica)
ATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATATACTGT
AAGTTTATATACCCCTGGATCTATCTGTTTTTTCGGGACCAATTAATGAT
ATTCTGATGGACGTTTGGTTAAAGAGATTCCTGCATAAAAAATCCATGAA
TAGCTATAATGAAAATCGTTTAAAAAATTAAAGTCAAAGTTGTCAACAAT
GATTCTATCCTAAGATATTGACATCAGAAGTTCCAAATTCAAGACATCTG
CACTCTGTGGAAGCCATATTGAAATAATAATTTTAATTTCAAACTCTATG
GTATCCTTTATCCATACTAGGTAAAGATTAGAGAATTGGATAAAAAATTA
AATGACTTTTTATGGTATACAAAACCTCTAAATGTGGTCAATCATACAAA
AATCATTTAGTTCAACTTCGGGTATCCTTCTAGTCTGCTCTCAATTATTT
TAGTATGATGACTAGCTGGTATGAACAGAAGTTTTCCAAATTCAAATTTT
TTCATTTTTGTATGGCTTCCACAAAGTGCAGATGTCTTGAATTTGGAACT
TTAGATGTCAATAACTTGGGATAGAATCGCTGTTGACAACTTTAACTTGA
ATTTTCCAAATGCTTTTCATAATAGCTATGCCCTGACAAATTTTGATTTT
CTGTGCTGGAATCCCTTTAAATACCTTTCAGCCCTACTTGGAAATTAACT
TTTGTTTCATCCCTTCGAAATTCAACGTTTAAAAATTGCATTTCGAAATC
ATTGCCACTGAATTTGCTAACCTTGAAACAAAGGAATTTCTATCCCCATT
GGGATTTTAATAGGAGTAGGAATTATCTCCACTGAGAAGAAAAGTTCCAC
CGGGGCTGTGAAACAGGGGTGTCTATGGTCGTGTTCACACTACAGACCTT
CCTTAATAAAAATGTAGCTAGGAGAATCTTTTGTTGACTATAATACAGAA
CGTGCATTTAACAAAGAGTCGAACGCGTAGTATTGTAATTTTTAATCGAT
CTTCCTTAATTAAGAGTCGTAAGCTCTATTGTCTTAAGGGTAGTGTAGAG
GCTTCCCTTAAAACAAAAGATTTTATTAAGGAAGCATAAACAAAGAATGC
GTGCAGTTAACAAAAAGTTTTACGATTTCAAAAACGAATGAACTGAGGAA
AAAATTAGAAATAGTGTAAACGGTGTTGTTGATGTGTAAGATGAATGCAG
TTATTGAGTAAAACCATTAGAACAAATATGTTTGCGGATTTCAATTGATG
TATGGATACCAATATCAACCAATCACAGGTGAAATCGAAACTCTCAATAA
AAAATCAACCAATGAGAAGCCTTAAGCAAAATCAATTACCGTGTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGTCATTGTTTTAAGTTT
TAAAGATTGTTCAGCTTTGATTGTCTATGTTAATTATTTTAAAAACCGAT
TTATTCTCTCGTTTTTTTTCAGGAAATCTGTTCATCAAACCACGGCGATA
TTCAAATACTCTGGAAGCATTTTAAACGTTTTTTCTTGTTAGACTTCCAA
GCGAAACGTATGGTACAACCTGTGGAATCTCTTCTGTGGTCTTTTGGGAA
AATGGTGCGGATTAGCATTGCATAGCAGAAAGAATGTAGAGCTCAGTTAA
CCATAGTTGATTTTGATGCAGATGATCGTCACTGAAGATTGATGCAGGAT
ACATCAACGACGCCACAATGCTTGTGCTTATTTTATACTTGTAAGGAAAT
AAATAAAGTCTCCGTCATAAATTTTGAATCCCCCTCAGATCCGCCACTAT
GTATTGCGCTTACTTCTATAGCTTTTTTAGACCACTTGCAAAGAATTTTT
CATTTGAAAAACCTCCTTAAAGCAGAAAGTGCACGTTCAAGACGAGCTTT
TTCTTATTAAAAGTACATAACTCGAAGCTTCCCTGTCTCAAAGCCCCATT
CAGTTTTCAATTGGAATAATTTTATGGATTAATATCTCAAAGTGGTTGAA
ATTTAGGGATTTTTAAAAGCGGACAAATTTTAAGTCAAATTTTTAGGTTT
GTGACACAGGTGTGTATTGCCGTGGTCATAGTAAGCCATGGTTGATATTT
TTAAAGCAGATTGTATCTATCAAAAGCGTCTGTTGGGTGTTTGTTTTATA
AATTCTTCTCCCAATAAGTTTTGATTAGAAATGGCATCTAAAGTTTTAAA
ACTTGAAGAAATGAAATTCTAGTTTTTGGCCTGTTTTATTCAATTCGAAC
TGTTTTACAAGAATAATTTTGATGCACAAAACATCTTTTGGGATACTTTT
ATTCACCAGGTGTTAATTTATATATCATCATTACAAGCTCAATATTGACA
AAGCTAAGACTTTAGACCAGCGGCCAAGGTAGTGCTCTGTGTCACTTCGT
AGGGCACCCCTTAGATCAAGGCAAATTTTTGATATTATGCCCCTAATAGG
AAGTCAAATCTCCTGCAGTTTTCAAGTGAATCGATTTTTATTTCAAGGGT
CCTTCTTTACTAACGGTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048125-exon-scaffold_140-1575043694:187020..187067 | TCONS_00048125-exon-scaffold_140-1575043694:187020..187067 | Clytia hemisphaerica | exon |
| TCONS_00048125-exon-scaffold_140-1575043694:184345..185395 | TCONS_00048125-exon-scaffold_140-1575043694:184345..185395 | Clytia hemisphaerica | exon |
| TCONS_00048125-exon-scaffold_140-1510915933:187020..187067 | TCONS_00048125-exon-scaffold_140-1510915933:187020..187067 | Clytia hemisphaerica | exon |
| TCONS_00048125-exon-scaffold_140-1510915933:184345..185395 | TCONS_00048125-exon-scaffold_140-1510915933:184345..185395 | Clytia hemisphaerica | exon |
| TCONS_00048125-exon-scaffold_140-1491911889:187020..187067 | TCONS_00048125-exon-scaffold_140-1491911889:187020..187067 | Clytia hemisphaerica | exon |
| TCONS_00048125-exon-scaffold_140-1491911889:184345..185395 | TCONS_00048125-exon-scaffold_140-1491911889:184345..185395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:184345..187067 - |
Blast
The following BLAST results are available for this feature:
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