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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048109 ID=TCONS_00048109|Name=TCONS_00048109|organism=Clytia hemisphaerica|type=transcript|length=403bp
ACGAGTGCTACCCAAAGACGTGTATATATCTTATGTCCTATCACCAATGC
CGTACACCAAGTTGAGATACACTCATAgacgttttaaatgttttcgaACT
CATCAATAAAGAATACTAATGACAAGCCTTGATCAGAAAGTATTATAACG
CGTTCACCATACATTGATTTAACATCACCATCATACTGACCAAAGCGCAC
CTGGTGCTTTCAACGAATAGCAGTCTTCAATTACACTTAACATCCGCTAT
CGTGCGTTAAAGAAATGTTTGGGAAACGTTTGGGAAACGTTTTGAAACAG
AAATTTTGTTGCGTCCAAAGAAATACCAGGTCAGGGGAACGCGAAGACGG
ATCAGTCCGAAGTATTCCGAAAAAGAGATAACGAATCTGGTAGATTGACC
GAA Run BLAST on NCBI transcript from alignment at scaffold_140:229799..237518+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048109 ID=TCONS_00048109|Name=TCONS_00048109|organism=Clytia hemisphaerica|type=transcript|length=7720bp|location=Sequence derived from alignment at scaffold_140:229799..237518+ (Clytia hemisphaerica)
ACGAGTGCTACCCAAAGACGTGTATATATCTTATGTCCTATCACCAATGC
CGTACACCAAGTTGAGATACACTCATAgacgttttaaatgttttcgagta
agttttttttgttaaaaccaGTGCCTGTGTTTTTGTAAGGAGGCCAACAA
GGTACTGCATATTTCTTGTACGTAGATTGGACAAGCGTGGAGTGGCTTTT
TATCTTACCATTNTTATTTCCGTATGTCTCTGCTTCGCCACCGCCTTATT
GAACCGTAAGAAACTTTCGTAAACCAGGCTAAGAATATTTGTACACCCCT
GTCACAAACTGAGAAATCATTGTTATTTCAATCCGGGAATGAATTTTCAG
GTCTTTTTATTATCAACTACATTAATTTTAGGTGCTGAAACTTGTATGTA
AGGTCATTAGAATTTAGAATGGATGTTTAAAACACTTAAACTTAAAATCA
TAGCAgctattaaacaaaaaaaaaatatcgataaaaagcACAATTCCAAA
ATACACCATGTAAATTCagtatattttctttatttccttCAGATTTCATC
TTTCATTCGAAACTTTGAAGAACGCTTATTGTGAAAGTGGAGTTAACGAG
TGCTACCCAAAGACGTGTATATATCTTATGTCCTATCACCAATGCCGTAC
ACAAGTTGAGATACACTCATAgacgttttaaatgttttcgagtaagtttt
ttttgttaaaaccaGTCCTTGTGTTTTTGTAAGGAGGCCAACAAGGTACT
GCATATTTCTTGTACGTAGATTGGACAAGCGTGGAGTGGCTTTTTATCTT
ACCATTTCGAAATCAATATTACACTCCTTTTTTATAAATCTTAAACCTCT
TACATATTTGATAACGAATGTGTTTGTGTTGAAACTATTATCCTTAAGAT
ATAATTCAGAGAGATTATTCTAGCTTTAGGCTCAAAAGATTCTGACACAG
TTGCTTCTTAAAGCAGACAAAGAGTAGGACTGATTCAAAGTTTCCTTCTT
TATTTCAGACTCATCAATAAAGAATACTAATGACAAGCCTTGATCAGAAA
GTATTATAACGCGTTCACCATACATTGATTTAACATCACCATCATACTGA
CCAAAGCGCACCTGGTGCTTTCAACGAATAGCAGTCTTCAATTACACTTA
ACATCCGCTATCGTGCGTTAAAGAAATGTTTGGGAAACGTTTGGGAAACG
TTTTGAAACAGAAATTTTGTTGCGTCCAAAGAAATACCAGGTAAAAATAT
AGTTATAGACACCTTCCTCTCTCAGCCAGCGGTGGTAAAATCAATGGACA
GAAACTCGAATGGGGTTGATATTCCTATGTTTTTTTGTGGTTGGACTTTG
AATTACATTGTTTTCAAGACATAAAATCCTATGAGATACGCAACCGTTCC
TCCATTACATATTATAAAcactttgaagattttgttaGCTTTGATTAAGA
TTTTAAAACACAGAGACGAATGAAGATAGATCATCCATTAATGACGAAGA
AAATAGCGTCATCCTTCTAGctgcggctttcttatactatttGGTATCTT
TGTAACCCTTTAATAGATTCTTGAGGTttgaccaatgaagtataagcccg
aaaggctagaagtAAATCTCCTACATAAGATTTGAAGCTGCTAAATCCTA
CCTATGCTGCCCGGCGCGGCCCGGCCCGTTGTCAAAGCTAGCGGTCTCAT
GAACTTCTAACGACTGGACGGAGAGCTCCTCATATATGCGCGtagttttc
attgtttcaaataAATAGGATGATCACGTTCTGTTCACGTGATATTGCGT
CAGAAAAAGTCCAGGTCTCGATAACCCAGTTGTTGTGATTTGTATGAATG
TCGGgcaaaaaaacaatctttttcGAAAGCACTCTGCTCCCACCATCAGT
GTGAAGTGGAAACTTTTGacttttacaagctttttcatcaaaatattgac
AATATCtattggaaatcttttaaatacaGATTCACGTCCAAATATAAAGG
TAGGatatatttatttcttttttctatgaAAAGAGAGGGAAAAGTATGTT
GTTGGAATGAGAATGATGACAGGCTGATGAGCTTTCTTCATACTCTGACT
CTCTAActaaaattattaattttttttttgattttcacaaATCTTCCCTC
TTATACATTAATGATAGTACAGGAAACAATTTAGCAAATGTGCTTTCGAA
GAACTACTTCTACTACCTTCACTGTCCTTCACTCAAATGTATAGAAAATT
AAATATAGCTATACCTTTTTGCTACCTTGTCAAAACTGCTTTTTTTAAAG
AGAGTACATTTTTTTACATTTTTAGGATTCTCATTCTGTGGTGTCAACAA
CAGAAAATGGTTATATCCACGACTAACATTTATTCATTGAACGGGATTTG
TATGTATTGTATGAGGAGCAGATGAGAGACGCTGATGTCAAGAAAGATGG
AATTACATGTCTTTACGATATATCATACGTTATGATGTTTGACGTTACTC
CCCAGCTGGATTGATCTAAATCAATGTCGTTAATCAACTAGTCAAATTCT
AATAAAAAGCAAAGCTTTTAAGAAAGTTCGTTATTAAATCTCTCACAcat
gcagaaaaaaatcgataTGCATTTCTTTAAATTGACATTATAATGACAGG
ACTTATTTGGAAATGAATTTCTAAATTGAACATGTGATAGTTTGGTATAT
TATATATGACTTTCCTGACTATAATTTATGTCAGATTGGTCAAACTTtgt
taaaatattggaaaatacACATGAAAGACTGAAATGGAATGATGGTcagc
ttttttgttattttgtttgcTGACAATATTGACACTCCCAGCAATGGTAA
GGTCATAGCTGCACAATGACCAAAATTTGTACGTGAACATAAATTGGCAG
TGACTCTGGAATGTAGtgacaaaaatcaattttatttcaaaagttttgat
tgaattttacttATGTTATTTAACTGTAATTAGGATGATTTTAATTTATT
AGACTGAAACAAAGATTAAtttcaaaagctttagaaaaatattgGCGTCC
AAAACAACAGTGCTGACATTCTGCTGAATGTgtttaaattttactttaat
tttgagGTGGTATTTCGGTTAAGAAAGGGCtgaattttattgatttacta
attttatgtacaatttttttaatgtttacagGATAAATCTCCATGCTGTa
gaatttaatcaaattaatttgataaaagtgtaCACAATTTGATCAGTCTT
TTAGATTTTCACAAAGcaataaattacagtatttcaaAGACCTAAATCAT
GTGAGTGCAtcatctttttcaattttacaacTTCTGAAATGAAACCTGTT
TAATACCacatttcaacaatatttcacaattttaatttagaaaatttttg
gccatttaaaaaaaaaacacctaatttttcagcaaaagttttgTACAAGT
TAATACctcaaaattttggatattaGCCAGTGTAAGAATCACAGCTGACG
TCATATTTAGTACTTCTGATAAATGAAGTAGACCatatatagcggtcatt
aagtaagccattaaagattcgaacggcgggcggtattgaaagtttctatg
actcaaatagtcataccANgtcattaagtaagccattaaagattcgaacg
gcgggtggtattgaaaggttctatgactcaaatagtcataccagcgctga
gaaaactaaggcgtcgtgcttcagagggctgaaatatcattaaccgccct
ggttatagggcgataacgtcatttgcggcccgcttgGAACTTTatcgaag
tcgttgcattgaagcggcgagactaaaccgacgtcagaaaaaaaacactc
ttttgcATTGAAGTGAAAAGACTtggctgacgctagaaaaaacgttgttt
gaatttccgatatggataataatagtaatagcgttaagctttcgttcgtt
gttgtcattaattctgccctttCAGTTTGATTATTAGCCCTCTAGTGCCA
TTTGCGCCCTCCGCTTCGcgtcgggcccaaatgacactctcgggctaata
atcaaactgcgcgggcagaaaataacaacaacgacctcaaactgaacgct
attgttatattatattttttgaattgtgATTATGATATTATATTTTGTGA
TTTGATTTCTCTACTACATATTTTTATTCACTCTCTTTATTCCCCCAATA
CCTATTCCTCTTCTTGACCGCCCTTACGTTGACCTATTAAAGTAATTATC
AATATAACTTAAAAATTATACAATTTTCCAAGACAATAATAATCATTTTA
TTATAGGTGTTCCTATAGAATATTTTAACCAAAATGCTTGTCTCTCCCTA
GTCAGAGTATGAATGAAATCAGACAAAAATACTGAAGATGCAAAAAcatt
caataattttcaaattgagGCCTAAGTGCAAAAATTCCAAGCTGCAAATG
CTCATTTGAAAACtatcttcaaaaaattgaagtcGATTTTAAGAAATCAA
TATAAGGTCTGATAAAatatatatgaaaaataaaatcataattTCTTGTA
TCAGTCAGGGAATCAGTCAATACAGTGTGCAAGTTCATTCTAAAGAGCAG
aagatttgaaaacaaaccATACCACAAACCATACCACAAATAccagaaaa
aaacatttgatgTTTACGGTAACGGTTCATGTGTCTCTTATAAGGGCATG
AGATGTAAATGCTGTAAATCTAAACTTTATAGTATAGATTGCATCCATTT
AAActtaaaataaaccagccgaggctggaaggtcagccaatagagcttag
ctagatagctNNgattttccaaatatttgacaccccctccccccttgtac
gcagagaacaatagaaatgactttgtttaaacaatagatgtacgcttttg
ctaaacccctctccccccttcactgtgtacgtactatatggattgCCCCT
CCAGTCTGGGTAACCATCAGTAAccatcaagttacacaacatgcacacaa
ccatcttgaagactttgctggtcacaaataataatcaaaagcaaaactta
aaattcataactatgcggggaagctcatttttcccccgttttgctttaaa
ctcgcttttgattggtctatgaatttgggcgattgatttaccgccttggc
ggaataaacacacaaccatataaataaattcaacagggcagcggtgtagc
aattaatttcaactgggagtcctctcttctgaaGAAGACCAGATTAATCT
GTTTtattatggctgtgcaagttgtgacgagagtgtgcatgttgtgtaac
ttgacggcagcCCGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTTTACTGTAACGGTTCATGTGTCTCTTATAAGGGCATG
AGATGCAAATGCTGTAAATCTCAACTTTATAGTATAGATTGCATCCattt
aaactttaaaaagtggcattaaaatgttaatgtttttaaaacGTCATCAT
AGTTTACAACGGGTTCAACAACGAATTTTCCAAATACTGCAAATACATAT
GGATTAAATCCATTTTTCGATTGATTCAAATGGTTGCATCTCTTAAAATG
TTATCTCCAGCTGTTTACGTTTGTAGCCCGTAGTTGTTAAAGCTTGAGTT
GCGTCCAATCTGTTTCCAATCTTTTCATAGCCATCCTGTAAAATAGAACA
AAAATTCgttatttttagtttgacaacAGTATTAGTACAttgattTTTAT
TTGATAACAGTGTAACAGATTTATCAGGGACACACCAATAAATTTATTGC
TCTCAAATTTGCAGGCTTGAATGCAGGCGTCCTGCCAATTCAGTtaatat
ttgaataaaatttgtgTGGGATGGAATGATGCTAAGGGGTATTTCAGAAC
TATATACTGTATATAGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAGGGGTATTTCAGAACTATATACTGTATATAGAATTTCTAAACT
TTAGAACCCCAGCAAAGTACGATGCTAGCAGCATTTTTGACATTATTTAT
TATGTTCCAGCTTTGAATTTCCATAAAGCGCAAAAAGAAACTCGTCAAAC
CTTCGTAGTACCAAACCAACACGTCAATTCTGCAAAATTAGCATCATGTT
TAATAACCCCTACTGTACACTATACCCAGTATACAGTCAGACAGTTCAAA
GATCAAAGAGATAAACAAACAGGTTAAAAATTACTTACTTTTTTATCAAC
TCCGCTAACTTGCCAGTGCAAAATGCATGAACCCAGATCAGAAGAATGGA
TGCAGTGGCGTGGATGGATGATGAGTGCTGTAAATAGTTCTATAACTGTT
TAAACTTTAAAGTGAAGCAAGGGGTTTGTCTCTTGTAATCCAGACTTCGT
GTTTGCATATATCCTCCTCAGCGCTCAAAACAAAAAGTCCAAGTGGATGC
CACTCAAAATATCCAAGATCTCTCAGTCTTTCTTTACCCATCAATTTTCT
GTATTCCTTCTTTATATCCAGTTTCTGGTTTAGATTTGAACATGATTCaa
gcaattttgaaattaaattttttcaagaagttcCAAACTTTGGTTTCTGC
CAGGCACCAGCGGAGGTGAATGAGGCAAAAACAGCTTAGCAACGACGTCA
TTTCAGCaagattttcaaatcaaatgaatggGGCTTCTAGGCCATGAATG
GGTGTGAATCCCATTTGATTCTTTCAAGAAACCCTTTATCTATCACCAGT
TGACCATTCATTTCCATTCATTCAAAATAAGCCAAGATCCAGGTCCATCT
CTGACgacaacaaattcaaaataaaagccTGTCGGGTTTTGAAAGGTGCA
AGTGTCGGATGACTTGTCTCGATGAATGTAAAGTTTGAGATTGATTCCTT
TTGGATGTTGGTACATGAATGATATTCAAATTCACCAATTAAAACCCCAT
AGTGATAACATAAGCACGAAGAAAGATATATCAGCTTCTTTGGTTGTTAT
GCAAGCCATGTCGGGAAAAAAACTTTCGACGCCATGttgaaaatcaccaa
aattcaaatttttggcgGCAACGCGCTCTCTGCAAAAAGGAAAAAGCCGC
GCTTTCTTTTTGAAACAATGAGTTCTCCGTCCAGTCGTTAGAAGTTCATG
GCGGTCTATATcctaaggcttcactttttcttgcctgggaaaggctAATG
ATTCCCTTCTAGCGCTTTgggcttttacttcattggGTGTGACATTTTTG
TGCTCGATTTCAATGCAATCATATTCcgaaattcatatttttctaGGTCA
GGGGAACGCGAAGACGGATCAGTCCGAAGTATTCCGAAAAAGAGATAACG
AATCTGGTAGATTGACCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048109-exon-scaffold_140-1491911889:229799..229895 | TCONS_00048109-exon-scaffold_140-1491911889:229799..229895 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1510915933:229799..229895 | TCONS_00048109-exon-scaffold_140-1510915933:229799..229895 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1575043694:229799..229895 | TCONS_00048109-exon-scaffold_140-1575043694:229799..229895 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1491911889:230807..231038 | TCONS_00048109-exon-scaffold_140-1491911889:230807..231038 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1510915933:230807..231038 | TCONS_00048109-exon-scaffold_140-1510915933:230807..231038 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1575043694:230807..231038 | TCONS_00048109-exon-scaffold_140-1575043694:230807..231038 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1491911889:237445..237518 | TCONS_00048109-exon-scaffold_140-1491911889:237445..237518 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1510915933:237445..237518 | TCONS_00048109-exon-scaffold_140-1510915933:237445..237518 | Clytia hemisphaerica | exon |
| TCONS_00048109-exon-scaffold_140-1575043694:237445..237518 | TCONS_00048109-exon-scaffold_140-1575043694:237445..237518 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:229799..237518 + |
Blast
The following BLAST results are available for this feature:
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