TCONS_00048141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048141
Unique NameTCONS_00048141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048141 ID=TCONS_00048141|Name=TCONS_00048141|organism=Clytia hemisphaerica|type=transcript|length=657bp
TAGAATGAATagtttggtattgttggaaagatatttgaatGTGCCCATAT
GTTCCTATAGTTAAACTAATTAGTTTAGTTTAATTAGTTGTAAATTCgtc
aatgaaattgaaaaagaaataataagaaaatttgctacttttgatagaaa
ataaaatggaaatctTTTGATGAATCAGTCAGATTATGCATACTAGAGGT
AAGGTTTATATTTTAAAGTATATACCTTTTAAACTGtctttgaaattgtt
ttgaagtCCACAAATCGTCCTTTGATTAAAGCTTGATCTTGACTAGATAT
TATATCATTCATTACATTTGATTTTAAGAGATTGAATAGTGTTAACTCAT
AGTCGATGGTAAGAGCAgcatttgaaatgccaaaaGTCTGGATATAATTC
TAttaagattttattacaaaggTTTATGACTATGAAATATGCAGtggaat
ttgaaataaaatttagttTAGTTTGCGTTTATAACTTGATTTCGTCAGAT
TTCCAATGTGATGATCGGTTATTCATACAGTTTTGTAAATTATACCAcga
gtttaaaatttgagtgTACAACTTCGGTACTGATGATTTGGAAGGTTCTC
CTTCATACAGTTTTGGAAATTATACCATGAGTTTAACATTTGAGTGGACA
ACTTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_140:256089..256745

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048141 ID=TCONS_00048141|Name=TCONS_00048141|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at scaffold_140:256089..256745 (Clytia hemisphaerica)
CCGAAGTTGTCCACTCAAATGTTAAACTCATGGTATAATTTCCAAAACTG
TATGAAGGAGAACCTTCCAAATCATCAGTACCGAAGTTGTAcactcaaat
tttaaactcgTGGTATAATTTACAAAACTGTATGAATAACCGATCATCAC
ATTGGAAATCTGACGAAATCAAGTTATAAACGCAAACTAaactaaatttt
atttcaaattccaCTGCATATTTCATAGTCATAAAcctttgtaataaaat
cttaaTAGAATTATATCCAGACttttggcatttcaaatgcTGCTCTTACC
ATCGACTATGAGTTAACACTATTCAATCTCTTAAAATCAAATGTAATGAA
TGATATAATATCTAGTCAAGATCAAGCTTTAATCAAAGGACGATTTGTGG
acttcaaaacaatttcaaagaCAGTTTAAAAGGTATATACTTTAAAATAT
AAACCTTACCTCTAGTATGCATAATCTGACTGATTCATCAAAagatttcc
attttattttctatcaaaagtagcaaattttcttattatttctttttcaa
tttcattgacGAATTTACAACTAATTAAACTAAACTAATTAGTTTAACTA
TAGGAACATATGGGCACattcaaatatctttccaacaataccaaactATT
CATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030646XLOC_030646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048141-exon-scaffold_140-1491911889:256089..256745TCONS_00048141-exon-scaffold_140-1491911889:256089..256745Clytia hemisphaericaexon
TCONS_00048141-exon-scaffold_140-1510915933:256089..256745TCONS_00048141-exon-scaffold_140-1510915933:256089..256745Clytia hemisphaericaexon
TCONS_00048141-exon-scaffold_140-1575043694:256089..256745TCONS_00048141-exon-scaffold_140-1575043694:256089..256745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:256089..256745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8793	2.26882	1.72794	0.749855	0.114528	0	0	0.285948	0.292826	0	0.107222	0	0	0	0.0449675	0	0.134762	0.158416	0	0	0.306267	0.172126	1.00548	0.586858	0.255073	0.151764	0	0	0.220718	0.142098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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