TCONS_00048111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048111
Unique NameTCONS_00048111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048111 ID=TCONS_00048111|Name=TCONS_00048111|organism=Clytia hemisphaerica|type=transcript|length=704bp
TTGCACTTGGCTTTAGCTCATTGGTACCCGTACTCATTCCTGTCAGATCG
CATTGTTTTTGGTTCAATTACAACCTGTGAAAACAAGGTAAGATAAGCAG
AAAATGTGCCGCATCTAATTAAGTCACGCAATAAACCACAGTGATTGATA
TGGTTCTCACAAACAAATATATCGTGATGAGGTATCATTGGTTTGTGGAC
AAGAAAGCTGTTAGATGTCAGGACTTAACTGAACCTGTTATTGTTATGAT
GGTGGAGAATACATAAAAACAACTCCGTAAAGAAGAGAGTGGCTTTATAA
TGCAGAACGTCCGGGATACTACAAATACGCtgaaaaaccaaaagatttgc
GTTTCTGCGAATGGCAATGATAATCTTTTGTACCACCGGGAAAGATAGAT
AGATTCGATTCATTACGTGGATAACTTGTCTATTCGTcgtaattttcatt
tcaaaaatttgcacCTATTTCGGCTTGACGTTACGGCGCCGAAAAGAATA
ACAGCAAAATTGAATTGCAGTTTTCCTATCGTCCACACGCTTGCACGCCT
CAGACGCTTCATCCTTTAAAATTGTCATATTACACAACTCGAGCGTGTCA
TAGACGCTGTTAAATCCAACCAAATGAAGTCTAAAAACACTATTCCATTC
CATATACAACAATTCACAACAAAGTTAAAGGCAAATACAACCTGAAGCCT
GGTG
Run BLAST on NCBI

transcript from alignment at scaffold_140:262407..263672+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048111 ID=TCONS_00048111|Name=TCONS_00048111|organism=Clytia hemisphaerica|type=transcript|length=1266bp|location=Sequence derived from alignment at scaffold_140:262407..263672+ (Clytia hemisphaerica)
TTGCACTTGGCTTTAGCTCATTGGTACCCGTACTCATTCCTGTCAGATCG
CATTGTTTTTGGTTCAATTACAACCTGTGAAAACAAGGTAAGATAAGCAG
AAAATGTGCCGCATCTAATTAAGTCACGCAATAAACCACAGTGATTGATA
TGGTTCTCACAAACAAATATATCGTGATGAGGTATCATTGGTTTGTGGAC
AAGAAAGCTGTTAGATGTCAGGACTTAACTGAACCTGTTATTGTTATGAT
GGTGGAGAATACATAAAAACAACTCCGTAAAGGTAGGCTACTTCTTTATT
TCAGAATCAGTGCCAATGTTGGTCTAGGTATCGAATACCAGTCAGTAATT
ATAAATGTGATATACATATTACATATATAGATTGTAATATACATAAGAGC
TAAGATTTTTAAACATCGTTATCAAGTATATTGATGTAATGGCTCGATAT
TTCTTAAACTTTTTCAAGTGTTACCCGCTTATTTGACCaagttttatgaa
attttccataCCTCTAAAATCTTATTGAATGTTGTGGGCCCATCCAGAAA
AATAAATAGTCAATTTGAGGAGAAGCTTTGTGTAAGagtaatgttttaaa
aaaattcaactttgttTTCATTGATAGAAGAGAGTGGCTTTATAATGCAG
AACGTCCGGGATACTACAAATACGCtgaaaaaccaaaagatttgcGTTTC
TGCGAATGGCAATGATAATCTTTTGTACCACCGGGAAAGATAGATAGATT
CGATTCATTACGTGGATAACTTGTCTATTCGTcgtaattttcatttcaaa
aatttgcacCTATTTCGGCTTGACGTTACGGCGCCGAAAAGAATAACAGC
AAAATTGAATTGCAGTTTTCCTATCGTCCACACGCTTGCACGCCTCAGAC
GCTTCATCCTTTAAAATTGTCATATTACACAACTCGAGCGTGTCATAGAC
GCTGTTAAATCCAACCAAATGAAGTCTAAAAACACTATTCCATTCCATAT
ACAACAATTCACAACAAAGTTAAAGGTAATAAAcaatatttattaaaaac
aaTTACAGCTTTTGTAGGTCAAGTTATATAAAACCCCATCCGAAAAACCC
CTGTTTATTCCAAGGTGACCGCTTTTTGTGCATGGGAATTTTGAACGGCT
AGATTTACTCGTCACAGATACAAAGGGTGTGTGACGGTAAAGTCATTCGA
GAAAATTACTTTGTTAATTAATATTTACATTTGTTATTATAGGCAAATAC
AACCTGAAGCCTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030625XLOC_030625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048111-exon-scaffold_140-1491911889:262407..262688TCONS_00048111-exon-scaffold_140-1491911889:262407..262688Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1510915933:262407..262688TCONS_00048111-exon-scaffold_140-1510915933:262407..262688Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1575043694:262407..262688TCONS_00048111-exon-scaffold_140-1575043694:262407..262688Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1491911889:263034..263431TCONS_00048111-exon-scaffold_140-1491911889:263034..263431Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1510915933:263034..263431TCONS_00048111-exon-scaffold_140-1510915933:263034..263431Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1575043694:263034..263431TCONS_00048111-exon-scaffold_140-1575043694:263034..263431Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1491911889:263649..263672TCONS_00048111-exon-scaffold_140-1491911889:263649..263672Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1510915933:263649..263672TCONS_00048111-exon-scaffold_140-1510915933:263649..263672Clytia hemisphaericaexon
TCONS_00048111-exon-scaffold_140-1575043694:263649..263672TCONS_00048111-exon-scaffold_140-1575043694:263649..263672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:262407..263672 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535098	0.480787	0	0	0.773232	0.113188	0.46073	0.207492	0.362381	0.634216	0.377747	0.270315	0.333669	0.19801	0.0406978	0	0.0538041	0.0551474	0	0.128549	0.0692968	0.366048	0.0821779	0.428182	0.412344	0.59972	0	0	0	0.0810494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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