TCONS_00048226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048226
Unique NameTCONS_00048226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048226 ID=TCONS_00048226|Name=TCONS_00048226|organism=Clytia hemisphaerica|type=transcript|length=1159bp
AGCTTCAAAGAGAACAAATCAAGGTGTTTGAATCCCAATCTCAAAAAACG
GAAGATTTCTTTAAGGATATGTTGAAGCAGCAGCTTGAACATGAACAAAA
CGAAAAAAGAAATGGAcagaaaacttttattggaacttgggaaaattttc
agtgaaaaaaaaatcaaaagaacagTAGTTTAATACTATATTACAAAGTC
ATATcttcatgttttgaaaaaattcttgtgTTTTTGAAGTGACTTTTTTA
ACTAGGATAGATATTCTTTAAGATGTTCTCTCAAAGCATTTCcatcatca
aaatcatcatGTAGTTGCCTTCTCTCTCTCCTTGCTACTCTTTCTCGTCT
GATAGCATTTTCTAGTACATCGTCCGTGCTTATGTAGCTATCCCCTCTAA
TTTGACAAATATTGTGAAGTACTACGCAAACCATGACTACTCCTGGGATA
TTTTCTAAATTATAATCCAAGCGTTTTAAGAGGCATCTCCAGCGTGATTT
TAAGAGCCCAAATCCAATTTCGACAGTGCATCTACTAGACGATAAGGCTC
TGTTGAAATTTCTCTGTTCAGCATCAAGGGGGGCTATATGAGGATAAGGT
TTAAGGAGCCAGGTACTAGCTGGATAAGCTCCATCTCCTAGAATAAGTGG
TCTTATTCGCATACCATCGATCACTTTCTTAGGAGTAGTAAGAATAGTTT
CGTTTTCCGCTTTTCGAAAGAGATCAGTAAATTGAAGGGCACGAGCATCG
TGTATGCTTCCAGGAAAACCAGTGACAAAATCGAGAAATATAGAATTAGC
ACCGACCACCCCTTGACTCATAATCGTGTACTTTCGTTTTCTACTGAAGT
AATCCACTCGACTTTCGCTGTCAGGTTTGAGAATCTCCATGTGGGTCCCA
TCAATAGCTCCGACTACCTGTGGCAATTCACACCTAGCACTCTCATGGAA
TTTTTCGATTGCGATAGCAGTTTCTAGTTCTGTCTCGGGAAAGTGAATGA
ATTCTCTGGTATGTCGTAGGAGTGCAATTACAAAGTCTTGATTTATTTCA
ACAATTGTAGTTTTTCCCACCCCAAATGTTTTGGAAACAGTTCTGTAAGA
GGCTCCATTAGAGAGGCGCCAAATGGAAACAGCCACCCTCTTTTCTACAG
GGATTGATC
Run BLAST on NCBI

protein sequence of TCONS_00048226-protein

>TCONS_00048226-protein ID=TCONS_00048226-protein|Name=TCONS_00048226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
SIPVEKRVAVSIWRLSNGASYRTVSKTFGVGKTTIVEINQDFVIALLRHT
REFIHFPETELETAIAIEKFHESARCELPQVVGAIDGTHMEILKPDSESR
VDYFSRKRKYTIMSQGVVGANSIFLDFVTGFPGSIHDARALQFTDLFRKA
ENETILTTPKKVIDGMRIRPLILGDGAYPASTWLLKPYPHIAPLDAEQRN
FNRALSSSRCTVEIGFGLLKSRWRCLLKRLDYNLENIPGVVMVCVVLHNI
CQIRGDSYISTDDVLENAIRRERVARRERRQLHDDFDDGNALREHLKEYL
S
Run BLAST on NCBI

transcript from alignment at scaffold_141:12982..14140

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048226 ID=TCONS_00048226|Name=TCONS_00048226|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at scaffold_141:12982..14140 (Clytia hemisphaerica)
GATCAATCCCTGTAGAAAAGAGGGTGGCTGTTTCCATTTGGCGCCTCTCT
AATGGAGCCTCTTACAGAACTGTTTCCAAAACATTTGGGGTGGGAAAAAC
TACAATTGTTGAAATAAATCAAGACTTTGTAATTGCACTCCTACGACATA
CCAGAGAATTCATTCACTTTCCCGAGACAGAACTAGAAACTGCTATCGCA
ATCGAAAAATTCCATGAGAGTGCTAGGTGTGAATTGCCACAGGTAGTCGG
AGCTATTGATGGGACCCACATGGAGATTCTCAAACCTGACAGCGAAAGTC
GAGTGGATTACTTCAGTAGAAAACGAAAGTACACGATTATGAGTCAAGGG
GTGGTCGGTGCTAATTCTATATTTCTCGATTTTGTCACTGGTTTTCCTGG
AAGCATACACGATGCTCGTGCCCTTCAATTTACTGATCTCTTTCGAAAAG
CGGAAAACGAAACTATTCTTACTACTCCTAAGAAAGTGATCGATGGTATG
CGAATAAGACCACTTATTCTAGGAGATGGAGCTTATCCAGCTAGTACCTG
GCTCCTTAAACCTTATCCTCATATAGCCCCCCTTGATGCTGAACAGAGAA
ATTTCAACAGAGCCTTATCGTCTAGTAGATGCACTGTCGAAATTGGATTT
GGGCTCTTAAAATCACGCTGGAGATGCCTCTTAAAACGCTTGGATTATAA
TTTAGAAAATATCCCAGGAGTAGTCATGGTTTGCGTAGTACTTCACAATA
TTTGTCAAATTAGAGGGGATAGCTACATAAGCACGGACGATGTACTAGAA
AATGCTATCAGACGAGAAAGAGTAGCAAGGAGAGAGAGAAGGCAACTACa
tgatgattttgatgatgGAAATGCTTTGAGAGAACATCTTAAAGAATATC
TATCCTAGTTAAAAAAGTCACTTCAAAAAcacaagaattttttcaaaaca
tgaagATATGACTTTGTAATATAGTATTAAACTActgttcttttgatttt
tttttcactgaaaattttcccaagttccaataaaagttttctgTCCATTT
CTTTTTTCGTTTTGTTCATGTTCAAGCTGCTGCTTCAACATATCCTTAAA
GAAATCTTCCGTTTTTTGAGATTGGGATTCAAACACCTTGATTTGTTCTC
TTTGAAGCT

Coding sequence (CDS) from alignment at scaffold_141:12982..14140

>TCONS_00048226 ID=TCONS_00048226|Name=TCONS_00048226|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_141:12982..14140 (Clytia hemisphaerica)
TCAATCCCTGTAGAAAAGAGGGTGGCTGTTTCCATTTGGCGCCTCTCTAA
TGGAGCCTCTTACAGAACTGTTTCCAAAACATTTGGGGTGGGAAAAACTA
CAATTGTTGAAATAAATCAAGACTTTGTAATTGCACTCCTACGACATACC
AGAGAATTCATTCACTTTCCCGAGACAGAACTAGAAACTGCTATCGCAAT
CGAAAAATTCCATGAGAGTGCTAGGTGTGAATTGCCACAGGTAGTCGGAG
CTATTGATGGGACCCACATGGAGATTCTCAAACCTGACAGCGAAAGTCGA
GTGGATTACTTCAGTAGAAAACGAAAGTACACGATTATGAGTCAAGGGGT
GGTCGGTGCTAATTCTATATTTCTCGATTTTGTCACTGGTTTTCCTGGAA
GCATACACGATGCTCGTGCCCTTCAATTTACTGATCTCTTTCGAAAAGCG
GAAAACGAAACTATTCTTACTACTCCTAAGAAAGTGATCGATGGTATGCG
AATAAGACCACTTATTCTAGGAGATGGAGCTTATCCAGCTAGTACCTGGC
TCCTTAAACCTTATCCTCATATAGCCCCCCTTGATGCTGAACAGAGAAAT
TTCAACAGAGCCTTATCGTCTAGTAGATGCACTGTCGAAATTGGATTTGG
GCTCTTAAAATCACGCTGGAGATGCCTCTTAAAACGCTTGGATTATAATT
TAGAAAATATCCCAGGAGTAGTCATGGTTTGCGTAGTACTTCACAATATT
TGTCAAATTAGAGGGGATAGCTACATAAGCACGGACGATGTACTAGAAAA
TGCTATCAGACGAGAAAGAGTAGCAAGGAGAGAGAGAAGGCAACTACatg
atgattttgatgatgGAAATGCTTTGAGAGAACATCTTAAAGAATATCTA
TCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030688XLOC_030688Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048226-proteinTCONS_00048226-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048226-exon-scaffold_141-1491911889:12982..14140TCONS_00048226-exon-scaffold_141-1491911889:12982..14140Clytia hemisphaericaexon
TCONS_00048226-exon-scaffold_141-1510915933:12982..14140TCONS_00048226-exon-scaffold_141-1510915933:12982..14140Clytia hemisphaericaexon
TCONS_00048226-exon-scaffold_141-1575043694:12982..14140TCONS_00048226-exon-scaffold_141-1575043694:12982..14140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:12982..14140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.109252	0.295987	0.248209	0.805789	0.795932	1.44039	1.632	0.69049	0.400932	1.05939	0.497431	1.46538	1.31547	0.572554	0.716978	2.2241	2.76945	0.913067	0.415417	2.31086	2.00775	0.541995	0.583931	1.96469	1.35981	0.665696	0	0.20725	0.211155
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
[Close]
BLAST of TCONS_00048226 vs. Swiss-Prot (Human)
Match: HARB1 (Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.227e-21
Identity = 69/253 (27.27%), Postives = 116/253 (45.85%), Query Frame = -3 
Query:  408 SIPVEKRVAVSIWRLSNGASYRTVSKTFGVGKTTIVEINQDFVIALLRHTREFIHFPETELETAIAIEKFHESARCELPQVVGAIDGTHMEILKPDSESRVDYFSRKRKYTIMSQGVVGANSIFLDFVTGFPGSIHDARALQFTDLFRKAENETILTTPKKVIDGMRIRPLILGDGAYPASTWLLKPYPHIAPLDAEQRNFNRALSSSRCTVEIGFGLLKSRWRCL---LKRLDYNLENIPGVVMVCVVLHNI 1157
            +I  E +V  ++   ++G+    +    G+ + ++     +   AL+    +FI FP  E       ++F+  A   +P V+G +D  H+ I  P++E  + Y +RK  +++    V       +   T +PGS+ D   LQ + L  + E             GM     +LGD ++   TWL+ P  HI    AE R +N A S++   +E  F  L SR+RCL      L Y+ E    +++ C VLHNI
Sbjct:   66 AISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEASIQALKDEFYGLAG--MPGVMGVVDCIHVAIKAPNAED-LSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEA------------GMHKDSWLLGDSSFFLRTWLMTPL-HIPETPAEYR-YNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNI 301
The following BLAST results are available for this feature:
BLAST of TCONS_00048226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HARB12.227e-2127.27Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1... [more]
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