TCONS_00048227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048227
Unique NameTCONS_00048227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048227 ID=TCONS_00048227|Name=TCONS_00048227|organism=Clytia hemisphaerica|type=transcript|length=359bp
GGAAAGCCAATTTTGATGATTTGGAGTCCCACAAGGCTCCCGAAGCATGG
AGAATGATTTTGGCTGAAGTGAACAAACATGGAAAGCAACGGACTTCGAA
AAACTTGAAggataaaataagaaatctgAAAGACTCTTACAAAGCTGCGA
AAAAACACAACGATGAAAGTACTGGTGAAGCACCTAAATTCAGCCAATTT
TACGAAGAATTTGATGAAATATATGGTTGTCGGGATGTAGTCAAAATGCC
ACATCTCCTTGGTGCCATGCAACAACACCAGCAACCGGTTGAAAGCGATG
AAGAGACTATATCAATTGGATTAAATGATGATGATATTTTTGACTCTGGT
GCTGGAGTT
Run BLAST on NCBI

protein sequence of TCONS_00048227-protein

>TCONS_00048227-protein ID=TCONS_00048227-protein|Name=TCONS_00048227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
KANFDDLESHKAPEAWRMILAEVNKHGKQRTSKNLKDKIRNLKDSYKAAK
KHNDESTGEAPKFSQFYEEFDEIYGCRDVVKMPHLLGAMQQHQQPVESDE
ETISIGLNDDDIFDSGAGV
Run BLAST on NCBI

transcript from alignment at scaffold_141:14212..14570

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048227 ID=TCONS_00048227|Name=TCONS_00048227|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at scaffold_141:14212..14570 (Clytia hemisphaerica)
AACTCCAGCACCAGAGTCAAAAATATCATCATCATTTAATCCAATTGATA
TAGTCTCTTCATCGCTTTCAACCGGTTGCTGGTGTTGTTGCATGGCACCA
AGGAGATGTGGCATTTTGACTACATCCCGACAACCATATATTTCATCAAA
TTCTTCGTAAAATTGGCTGAATTTAGGTGCTTCACCAGTACTTTCATCGT
TGTGTTTTTTCGCAGCTTTGTAAGAGTCTTTcagatttcttattttatcc
TTCAAGTTTTTCGAAGTCCGTTGCTTTCCATGTTTGTTCACTTCAGCCAA
AATCATTCTCCATGCTTCGGGAGCCTTGTGGGACTCCAAATCATCAAAAT
TGGCTTTCC

Coding sequence (CDS) from alignment at scaffold_141:14212..14570

>TCONS_00048227 ID=TCONS_00048227|Name=TCONS_00048227|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_141:14212..14570 (Clytia hemisphaerica)
AACTCCAGCACCAGAGTCAAAAATATCATCATCATTTAATCCAATTGATA
TAGTCTCTTCATCGCTTTCAACCGGTTGCTGGTGTTGTTGCATGGCACCA
AGGAGATGTGGCATTTTGACTACATCCCGACAACCATATATTTCATCAAA
TTCTTCGTAAAATTGGCTGAATTTAGGTGCTTCACCAGTACTTTCATCGT
TGTGTTTTTTCGCAGCTTTGTAAGAGTCTTTcagatttcttattttatcc
TTCAAGTTTTTCGAAGTCCGTTGCTTTCCATGTTTGTTCACTTCAGCCAA
AATCATTCTCCATGCTTCGGGAGCCTTGTGGGACTCCAAATCATCAAAAT
TGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030689XLOC_030689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048227-exon-scaffold_141-1491911889:14212..14570TCONS_00048227-exon-scaffold_141-1491911889:14212..14570Clytia hemisphaericaexon
TCONS_00048227-exon-scaffold_141-1510915933:14212..14570TCONS_00048227-exon-scaffold_141-1510915933:14212..14570Clytia hemisphaericaexon
TCONS_00048227-exon-scaffold_141-1575043694:14212..14570TCONS_00048227-exon-scaffold_141-1575043694:14212..14570Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048227-proteinTCONS_00048227-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:14212..14570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.267798	0	1.58608	1.10546	1.38434	3.86388	0.990431	0.419851	0.727935	0.345418	0.263311	0.520547	0.428236	0.389663	3.09843	1.1318	0	0	0.402142	0	0	0.493097	0.253939	0.226635	0	0	0.0320556	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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