TCONS_00048231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048231
Unique NameTCONS_00048231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048231 ID=TCONS_00048231|Name=TCONS_00048231|organism=Clytia hemisphaerica|type=transcript|length=409bp
AAAAACTACATTCATAAACGATGCTCGGGCATAAAAGGGCGTTTAAGGGA
AGATTTTAACTATGTTTGTCCTGCTTGTCTAAATCCTATTGTTGTACCTC
CCTCCCCTGTGTTTTCTATGTTCAGATCTTGAGGTAGTACCCACATTCTG
CTACCTAGGTGATATGATTGGGGACAATGGAGGCTGTTTTGATGCAATTA
CCTCAAGGGTGAAGTCTACGTGGAATAAATTTAGACAGTTGTTGCCAATT
TTGACTAATAAGAGCATCCCATTGCAATGTCGTGGTCGTGTCTTTACTTC
GGTCGTAAGGGGTGTTTTGCTTCATGGAAGCCCGACCTGGGCAGTCACGG
TTGATGACTGTAGCAGGCTTGTTCGAAATGACAACGCGATGGTTCGTTGG
ATCTGTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_141:72166..72574

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048231 ID=TCONS_00048231|Name=TCONS_00048231|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_141:72166..72574 (Clytia hemisphaerica)
TGAACAGATCCAACGAACCATCGCGTTGTCATTTCGAACAAGCCTGCTAC
AGTCATCAACCGTGACTGCCCAGGTCGGGCTTCCATGAAGCAAAACACCC
CTTACGACCGAAGTAAAGACACGACCACGACATTGCAATGGGATGCTCTT
ATTAGTCAAAATTGGCAACAACTGTCTAAATTTATTCCACGTAGACTTCA
CCCTTGAGGTAATTGCATCAAAACAGCCTCCATTGTCCCCAATCATATCA
CCTAGGTAGCAGAATGTGGGTACTACCTCAAGATCTGAACATAGAAAACA
CAGGGGAGGGAGGTACAACAATAGGATTTAGACAAGCAGGACAAACATAG
TTAAAATCTTCCCTTAAACGCCCTTTTATGCCCGAGCATCGTTTATGAAT
GTAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030693XLOC_030693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048231-exon-scaffold_141-1491911889:72166..72574TCONS_00048231-exon-scaffold_141-1491911889:72166..72574Clytia hemisphaericaexon
TCONS_00048231-exon-scaffold_141-1510915933:72166..72574TCONS_00048231-exon-scaffold_141-1510915933:72166..72574Clytia hemisphaericaexon
TCONS_00048231-exon-scaffold_141-1575043694:72166..72574TCONS_00048231-exon-scaffold_141-1575043694:72166..72574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:72166..72574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.431733	1.00717	0.276786	0	0	0	0	0	0	0.124919	0.0568975	0.172785	0	0.0864137	0	0	0	0	0	0.22596	0	0	0	0	0	0	0	0.00553304	0.0314474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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