TCONS_00048233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048233
Unique NameTCONS_00048233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048233 ID=TCONS_00048233|Name=TCONS_00048233|organism=Clytia hemisphaerica|type=transcript|length=309bp
ATCGGGGACATGGTGGAAGTATATAAACATTTTAATGTCTATGATAAATC
TTCTCTATGTCAGAAACTCGTTCTTCGAAATCGACCTCAACGTAAGCACA
ATCTCGAATTAAAGAGGAATTTCGCTGAAGACGGCATTAGAGGATACCAA
ACGAATTCACTTTACTATAGGAGCATTGATACTTGGAACAGTTTGGCTAC
CAATGTTGTAAATGCACCGTCCgtagggaaattcaaactagaattgacaa
acgaatggaatgataagatctataaattgtaaagatgtaaaattgtttca
tagaggtca
Run BLAST on NCBI

transcript from alignment at scaffold_141:88689..88997

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048233 ID=TCONS_00048233|Name=TCONS_00048233|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at scaffold_141:88689..88997 (Clytia hemisphaerica)
tgacctctatgaaacaattttacatctttacaatttatagatcttatcat
tccattcgtttgtcaattctagtttgaatttccctacGGACGGTGCATTT
ACAACATTGGTAGCCAAACTGTTCCAAGTATCAATGCTCCTATAGTAAAG
TGAATTCGTTTGGTATCCTCTAATGCCGTCTTCAGCGAAATTCCTCTTTA
ATTCGAGATTGTGCTTACGTTGAGGTCGATTTCGAAGAACGAGTTTCTGA
CATAGAGAAGATTTATCATAGACATTAAAATGTTTATATACTTCCACCAT
GTCCCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030695XLOC_030695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048233-exon-scaffold_141-1491911889:88689..88997TCONS_00048233-exon-scaffold_141-1491911889:88689..88997Clytia hemisphaericaexon
TCONS_00048233-exon-scaffold_141-1510915933:88689..88997TCONS_00048233-exon-scaffold_141-1510915933:88689..88997Clytia hemisphaericaexon
TCONS_00048233-exon-scaffold_141-1575043694:88689..88997TCONS_00048233-exon-scaffold_141-1575043694:88689..88997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:88689..88997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05451	1.54961	2.47929	1.14434	3.59128	2.78713	2.21738	1.92871	1.36191	2.12764	0	1.30686	2.94262	1.17224	1.80489	1.80141	0.703213	2.65225	2.91	0.429738	3.02968	1.71198	2.40842	0	2.2374	2.57	0.0883956	1.6925	1.00356	2.91
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top