TCONS_00048234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048234
Unique NameTCONS_00048234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048234 ID=TCONS_00048234|Name=TCONS_00048234|organism=Clytia hemisphaerica|type=transcript|length=218bp
AACCAAACAACATGGGTTCATGGGTAAGCGATCGACAGTGACACAACTAC
TTCACTACTTAGACAAATGTGCGGACTCGATATCCAATGATAAGGTTGTT
GATGTAATCTATTTCGACTTTGCAAAGGCATTTGACACCGTTCCACATCG
CAGATTACTAAGAAAACTCGAAGCGTATGGTATCAGAGGAAGGGTACTTG
GTTGGATGAAAGCATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_141:90219..90436

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048234 ID=TCONS_00048234|Name=TCONS_00048234|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at scaffold_141:90219..90436 (Clytia hemisphaerica)
AAAATGCTTTCATCCAACCAAGTACCCTTCCTCTGATACCATACGCTTCG
AGTTTTCTTAGTAATCTGCGATGTGGAACGGTGTCAAATGCCTTTGCAAA
GTCGAAATAGATTACATCAACAACCTTATCATTGGATATCGAGTCCGCAC
ATTTGTCTAAGTAGTGAAGTAGTTGTGTCACTGTCGATCGCTTACCCATG
AACCCATGTTGTTTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030696XLOC_030696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048234-exon-scaffold_141-1491911889:90219..90436TCONS_00048234-exon-scaffold_141-1491911889:90219..90436Clytia hemisphaericaexon
TCONS_00048234-exon-scaffold_141-1510915933:90219..90436TCONS_00048234-exon-scaffold_141-1510915933:90219..90436Clytia hemisphaericaexon
TCONS_00048234-exon-scaffold_141-1575043694:90219..90436TCONS_00048234-exon-scaffold_141-1575043694:90219..90436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:90219..90436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.72091	1.80691	0	4.17573	4.66304	0.530832	2.94057	1.96954	5.59233	3.87648	2.21338	3.88814	3.59765	3.99713	6.62148	0	0	5.02223	1.46317	2.59445	0	0	0	0	5.13763	5.19279
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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